Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0466

Experiment: Choline chloride 90 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0465 and Psest_0466 are separated by 71 nucleotidesPsest_0466 and Psest_0467 are separated by 34 nucleotides Psest_0465: Psest_0465 - Acetyltransferase (isoleucine patch superfamily), at 512,893 to 513,597 _0465 Psest_0466: Psest_0466 - Lipopolysaccharide kinase (Kdo/WaaP) family., at 513,669 to 514,301 _0466 Psest_0467: Psest_0467 - lipid A export permease/ATP-binding protein MsbA, at 514,336 to 516,153 _0467 Position (kb) 513 514 515Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 512.713 kb on + strandat 512.713 kb on + strandat 512.714 kb on - strandat 512.814 kb on + strandat 512.814 kb on + strandat 512.815 kb on - strandat 512.842 kb on - strandat 512.951 kb on + strandat 512.951 kb on + strandat 512.951 kb on + strandat 512.952 kb on - strandat 512.958 kb on - strandat 513.056 kb on + strand, within Psest_0465at 513.064 kb on + strand, within Psest_0465at 513.064 kb on + strand, within Psest_0465at 513.066 kb on + strand, within Psest_0465at 513.066 kb on + strand, within Psest_0465at 513.066 kb on + strand, within Psest_0465at 513.066 kb on + strand, within Psest_0465at 513.066 kb on + strand, within Psest_0465at 513.066 kb on + strand, within Psest_0465at 513.067 kb on - strand, within Psest_0465at 513.067 kb on - strand, within Psest_0465at 513.067 kb on - strand, within Psest_0465at 513.067 kb on - strand, within Psest_0465at 513.070 kb on + strand, within Psest_0465at 513.071 kb on - strand, within Psest_0465at 513.071 kb on - strand, within Psest_0465at 513.072 kb on + strand, within Psest_0465at 513.072 kb on + strand, within Psest_0465at 513.072 kb on + strand, within Psest_0465at 513.072 kb on + strand, within Psest_0465at 513.073 kb on - strand, within Psest_0465at 513.107 kb on + strand, within Psest_0465at 513.107 kb on + strand, within Psest_0465at 513.107 kb on + strand, within Psest_0465at 513.107 kb on + strand, within Psest_0465at 513.108 kb on - strand, within Psest_0465at 513.108 kb on - strand, within Psest_0465at 513.111 kb on + strand, within Psest_0465at 513.111 kb on + strand, within Psest_0465at 513.111 kb on + strand, within Psest_0465at 513.111 kb on + strand, within Psest_0465at 513.112 kb on - strand, within Psest_0465at 513.112 kb on - strand, within Psest_0465at 513.112 kb on - strand, within Psest_0465at 513.201 kb on + strand, within Psest_0465at 513.202 kb on - strand, within Psest_0465at 513.216 kb on + strand, within Psest_0465at 513.216 kb on + strand, within Psest_0465at 513.216 kb on + strand, within Psest_0465at 513.216 kb on + strand, within Psest_0465at 513.216 kb on + strand, within Psest_0465at 513.216 kb on + strand, within Psest_0465at 513.217 kb on - strand, within Psest_0465at 513.217 kb on - strand, within Psest_0465at 513.220 kb on + strand, within Psest_0465at 513.220 kb on + strand, within Psest_0465at 513.220 kb on + strand, within Psest_0465at 513.220 kb on + strand, within Psest_0465at 513.220 kb on + strand, within Psest_0465at 513.220 kb on + strand, within Psest_0465at 513.220 kb on + strand, within Psest_0465at 513.220 kb on + strand, within Psest_0465at 513.221 kb on - strand, within Psest_0465at 513.221 kb on - strand, within Psest_0465at 513.221 kb on - strand, within Psest_0465at 513.221 kb on - strand, within Psest_0465at 513.221 kb on - strand, within Psest_0465at 513.221 kb on - strand, within Psest_0465at 513.221 kb on - strand, within Psest_0465at 513.221 kb on - strand, within Psest_0465at 513.248 kb on + strand, within Psest_0465at 513.248 kb on + strand, within Psest_0465at 513.249 kb on - strand, within Psest_0465at 513.260 kb on + strand, within Psest_0465at 513.260 kb on + strand, within Psest_0465at 513.260 kb on + strand, within Psest_0465at 513.260 kb on + strand, within Psest_0465at 513.260 kb on + strand, within Psest_0465at 513.260 kb on + strand, within Psest_0465at 513.260 kb on + strand, within Psest_0465at 513.260 kb on + strand, within Psest_0465at 513.261 kb on - strand, within Psest_0465at 513.261 kb on - strand, within Psest_0465at 513.261 kb on - strand, within Psest_0465at 513.261 kb on - strand, within Psest_0465at 513.261 kb on - strand, within Psest_0465at 513.261 kb on - strand, within Psest_0465at 513.261 kb on - strand, within Psest_0465at 513.261 kb on - strand, within Psest_0465at 513.261 kb on - strand, within Psest_0465at 513.266 kb on + strand, within Psest_0465at 513.266 kb on + strand, within Psest_0465at 513.267 kb on - strand, within Psest_0465at 513.267 kb on - strand, within Psest_0465at 513.297 kb on - strand, within Psest_0465at 513.319 kb on - strand, within Psest_0465at 513.325 kb on - strand, within Psest_0465at 513.339 kb on + strand, within Psest_0465at 513.340 kb on - strand, within Psest_0465at 513.342 kb on + strand, within Psest_0465at 513.350 kb on + strand, within Psest_0465at 513.351 kb on - strand, within Psest_0465at 513.351 kb on - strand, within Psest_0465at 513.351 kb on - strand, within Psest_0465at 513.358 kb on + strand, within Psest_0465at 513.394 kb on - strand, within Psest_0465at 513.477 kb on + strand, within Psest_0465at 513.511 kb on + strand, within Psest_0465at 513.513 kb on + strand, within Psest_0465at 513.553 kb on + strandat 513.555 kb on + strandat 513.615 kb on - strandat 513.873 kb on + strand, within Psest_0466at 513.960 kb on + strand, within Psest_0466at 513.960 kb on + strand, within Psest_0466at 513.993 kb on + strand, within Psest_0466at 513.993 kb on + strand, within Psest_0466at 514.023 kb on + strand, within Psest_0466at 514.027 kb on + strand, within Psest_0466at 514.027 kb on + strand, within Psest_0466at 514.027 kb on + strand, within Psest_0466at 514.185 kb on + strand, within Psest_0466at 514.185 kb on + strand, within Psest_0466at 514.185 kb on + strand, within Psest_0466at 514.248 kb on + strandat 514.275 kb on + strandat 514.290 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 90 mM
remove
512,713 + -0.1
512,713 + +3.3
512,714 - +0.2
512,814 + +1.8
512,814 + +0.3
512,815 - +0.1
512,842 - +0.2
512,951 + +1.1
512,951 + +0.9
512,951 + -1.9
512,952 - -1.7
512,958 - -2.5
513,056 + Psest_0465 0.23 +1.1
513,064 + Psest_0465 0.24 -0.6
513,064 + Psest_0465 0.24 +0.1
513,066 + Psest_0465 0.25 -2.5
513,066 + Psest_0465 0.25 +1.5
513,066 + Psest_0465 0.25 +0.6
513,066 + Psest_0465 0.25 +0.1
513,066 + Psest_0465 0.25 +0.2
513,066 + Psest_0465 0.25 -1.0
513,067 - Psest_0465 0.25 -0.1
513,067 - Psest_0465 0.25 -0.4
513,067 - Psest_0465 0.25 +0.7
513,067 - Psest_0465 0.25 -2.4
513,070 + Psest_0465 0.25 -0.2
513,071 - Psest_0465 0.25 -1.4
513,071 - Psest_0465 0.25 -1.5
513,072 + Psest_0465 0.25 +1.3
513,072 + Psest_0465 0.25 -0.1
513,072 + Psest_0465 0.25 -1.8
513,072 + Psest_0465 0.25 +0.5
513,073 - Psest_0465 0.26 -0.1
513,107 + Psest_0465 0.30 -0.2
513,107 + Psest_0465 0.30 -0.5
513,107 + Psest_0465 0.30 -1.1
513,107 + Psest_0465 0.30 +0.3
513,108 - Psest_0465 0.30 -0.1
513,108 - Psest_0465 0.30 -1.4
513,111 + Psest_0465 0.31 +0.7
513,111 + Psest_0465 0.31 -2.3
513,111 + Psest_0465 0.31 +1.3
513,111 + Psest_0465 0.31 +0.5
513,112 - Psest_0465 0.31 +0.8
513,112 - Psest_0465 0.31 +1.5
513,112 - Psest_0465 0.31 -1.0
513,201 + Psest_0465 0.44 -0.6
513,202 - Psest_0465 0.44 -0.2
513,216 + Psest_0465 0.46 +0.8
513,216 + Psest_0465 0.46 -0.4
513,216 + Psest_0465 0.46 -0.1
513,216 + Psest_0465 0.46 +0.6
513,216 + Psest_0465 0.46 +0.9
513,216 + Psest_0465 0.46 -0.5
513,217 - Psest_0465 0.46 -0.4
513,217 - Psest_0465 0.46 -0.6
513,220 + Psest_0465 0.46 -0.1
513,220 + Psest_0465 0.46 -1.7
513,220 + Psest_0465 0.46 -0.7
513,220 + Psest_0465 0.46 +0.2
513,220 + Psest_0465 0.46 -1.2
513,220 + Psest_0465 0.46 +0.6
513,220 + Psest_0465 0.46 +1.1
513,220 + Psest_0465 0.46 -0.4
513,221 - Psest_0465 0.47 +1.0
513,221 - Psest_0465 0.47 -0.9
513,221 - Psest_0465 0.47 +0.8
513,221 - Psest_0465 0.47 -1.5
513,221 - Psest_0465 0.47 -0.2
513,221 - Psest_0465 0.47 -0.7
513,221 - Psest_0465 0.47 -0.3
513,221 - Psest_0465 0.47 +2.0
513,248 + Psest_0465 0.50 +0.1
513,248 + Psest_0465 0.50 +1.3
513,249 - Psest_0465 0.50 -0.3
513,260 + Psest_0465 0.52 -0.3
513,260 + Psest_0465 0.52 -0.8
513,260 + Psest_0465 0.52 +0.5
513,260 + Psest_0465 0.52 +0.6
513,260 + Psest_0465 0.52 -0.6
513,260 + Psest_0465 0.52 +0.7
513,260 + Psest_0465 0.52 +0.8
513,260 + Psest_0465 0.52 -0.1
513,261 - Psest_0465 0.52 -0.6
513,261 - Psest_0465 0.52 +0.0
513,261 - Psest_0465 0.52 +2.1
513,261 - Psest_0465 0.52 +0.5
513,261 - Psest_0465 0.52 -0.2
513,261 - Psest_0465 0.52 -1.1
513,261 - Psest_0465 0.52 -0.7
513,261 - Psest_0465 0.52 +0.3
513,261 - Psest_0465 0.52 -0.2
513,266 + Psest_0465 0.53 -0.4
513,266 + Psest_0465 0.53 +2.2
513,267 - Psest_0465 0.53 +0.2
513,267 - Psest_0465 0.53 +0.1
513,297 - Psest_0465 0.57 -0.5
513,319 - Psest_0465 0.60 -0.2
513,325 - Psest_0465 0.61 -0.2
513,339 + Psest_0465 0.63 +2.0
513,340 - Psest_0465 0.63 +0.2
513,342 + Psest_0465 0.64 +2.1
513,350 + Psest_0465 0.65 -0.1
513,351 - Psest_0465 0.65 +1.4
513,351 - Psest_0465 0.65 -1.2
513,351 - Psest_0465 0.65 +1.6
513,358 + Psest_0465 0.66 -0.5
513,394 - Psest_0465 0.71 -2.3
513,477 + Psest_0465 0.83 +0.5
513,511 + Psest_0465 0.88 +1.4
513,513 + Psest_0465 0.88 +0.9
513,553 + -0.5
513,555 + +1.1
513,615 - -0.9
513,873 + Psest_0466 0.32 -2.0
513,960 + Psest_0466 0.46 -0.1
513,960 + Psest_0466 0.46 -0.2
513,993 + Psest_0466 0.51 -0.7
513,993 + Psest_0466 0.51 +0.4
514,023 + Psest_0466 0.56 -1.2
514,027 + Psest_0466 0.57 -1.1
514,027 + Psest_0466 0.57 -0.4
514,027 + Psest_0466 0.57 -3.3
514,185 + Psest_0466 0.82 -1.3
514,185 + Psest_0466 0.82 +1.0
514,185 + Psest_0466 0.82 -1.3
514,248 + -1.7
514,275 + -0.6
514,290 + -0.1

Or see this region's nucleotide sequence