Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0449

Experiment: Choline chloride 90 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0448 and Psest_0449 are separated by 265 nucleotidesPsest_0449 and Psest_0450 are separated by 50 nucleotides Psest_0448: Psest_0448 - pyruvate dehydrogenase E1 component, homodimeric type, at 490,265 to 492,910 _0448 Psest_0449: Psest_0449 - Glutamine synthetase adenylyltransferase, at 493,176 to 496,121 _0449 Psest_0450: Psest_0450 - Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data), at 496,172 to 497,095 _0450 Position (kb) 493 494 495 496 497Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 492.984 kb on - strandat 493.123 kb on - strandat 493.162 kb on + strandat 493.626 kb on + strand, within Psest_0449at 493.626 kb on + strand, within Psest_0449at 493.627 kb on - strand, within Psest_0449at 493.638 kb on + strand, within Psest_0449at 493.638 kb on + strand, within Psest_0449at 493.638 kb on + strand, within Psest_0449at 493.639 kb on - strand, within Psest_0449at 493.639 kb on - strand, within Psest_0449at 493.639 kb on - strand, within Psest_0449at 493.639 kb on - strand, within Psest_0449at 493.639 kb on - strand, within Psest_0449at 493.639 kb on - strand, within Psest_0449at 493.667 kb on - strand, within Psest_0449at 493.742 kb on + strand, within Psest_0449at 493.743 kb on - strand, within Psest_0449at 493.947 kb on + strand, within Psest_0449at 493.947 kb on + strand, within Psest_0449at 493.947 kb on + strand, within Psest_0449at 493.948 kb on - strand, within Psest_0449at 493.948 kb on - strand, within Psest_0449at 493.948 kb on - strand, within Psest_0449at 493.948 kb on - strand, within Psest_0449at 493.971 kb on + strand, within Psest_0449at 493.971 kb on + strand, within Psest_0449at 493.971 kb on + strand, within Psest_0449at 493.971 kb on + strand, within Psest_0449at 493.971 kb on + strand, within Psest_0449at 493.971 kb on + strand, within Psest_0449at 493.972 kb on - strand, within Psest_0449at 493.972 kb on - strand, within Psest_0449at 493.972 kb on - strand, within Psest_0449at 493.972 kb on - strand, within Psest_0449at 493.975 kb on - strand, within Psest_0449at 493.975 kb on - strand, within Psest_0449at 494.086 kb on - strand, within Psest_0449at 494.095 kb on - strand, within Psest_0449at 494.095 kb on - strand, within Psest_0449at 494.316 kb on + strand, within Psest_0449at 494.316 kb on + strand, within Psest_0449at 494.316 kb on + strand, within Psest_0449at 494.316 kb on + strand, within Psest_0449at 494.316 kb on + strand, within Psest_0449at 494.317 kb on - strand, within Psest_0449at 494.317 kb on - strand, within Psest_0449at 494.371 kb on - strand, within Psest_0449at 494.579 kb on + strand, within Psest_0449at 494.579 kb on + strand, within Psest_0449at 494.580 kb on - strand, within Psest_0449at 494.580 kb on - strand, within Psest_0449at 494.865 kb on + strand, within Psest_0449at 494.866 kb on - strand, within Psest_0449at 494.872 kb on + strand, within Psest_0449at 494.873 kb on - strand, within Psest_0449at 494.873 kb on - strand, within Psest_0449at 494.873 kb on - strand, within Psest_0449at 495.000 kb on + strand, within Psest_0449at 495.177 kb on + strand, within Psest_0449at 495.492 kb on + strand, within Psest_0449at 495.492 kb on + strand, within Psest_0449at 495.492 kb on + strand, within Psest_0449at 495.492 kb on + strand, within Psest_0449at 495.492 kb on + strand, within Psest_0449at 495.493 kb on - strand, within Psest_0449at 495.493 kb on - strand, within Psest_0449at 495.854 kb on + strandat 495.854 kb on + strandat 495.864 kb on + strandat 495.909 kb on + strandat 495.910 kb on - strandat 495.911 kb on + strandat 495.911 kb on + strandat 495.993 kb on + strandat 496.094 kb on + strandat 496.094 kb on + strandat 496.094 kb on + strandat 496.094 kb on + strandat 496.268 kb on + strand, within Psest_0450at 496.460 kb on + strand, within Psest_0450at 496.460 kb on + strand, within Psest_0450at 496.481 kb on + strand, within Psest_0450at 496.481 kb on + strand, within Psest_0450at 496.559 kb on + strand, within Psest_0450at 496.559 kb on + strand, within Psest_0450at 496.664 kb on + strand, within Psest_0450at 496.664 kb on + strand, within Psest_0450at 496.664 kb on + strand, within Psest_0450at 496.664 kb on + strand, within Psest_0450at 496.664 kb on + strand, within Psest_0450at 496.664 kb on + strand, within Psest_0450at 496.742 kb on + strand, within Psest_0450at 496.796 kb on + strand, within Psest_0450at 496.796 kb on + strand, within Psest_0450at 496.796 kb on + strand, within Psest_0450at 496.796 kb on + strand, within Psest_0450at 496.796 kb on + strand, within Psest_0450at 496.796 kb on + strand, within Psest_0450at 496.878 kb on + strand, within Psest_0450at 496.878 kb on + strand, within Psest_0450at 496.910 kb on + strand, within Psest_0450at 496.910 kb on + strand, within Psest_0450at 496.910 kb on + strand, within Psest_0450at 496.910 kb on + strand, within Psest_0450at 496.910 kb on + strand, within Psest_0450at 496.910 kb on + strand, within Psest_0450at 496.910 kb on + strand, within Psest_0450at 496.910 kb on + strand, within Psest_0450at 496.910 kb on + strand, within Psest_0450at 497.033 kb on + strandat 497.033 kb on + strandat 497.033 kb on + strandat 497.093 kb on + strandat 497.093 kb on + strandat 497.093 kb on + strandat 497.093 kb on + strandat 497.093 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 90 mM
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492,984 - -1.0
493,123 - +1.1
493,162 + -3.4
493,626 + Psest_0449 0.15 +0.1
493,626 + Psest_0449 0.15 -0.5
493,627 - Psest_0449 0.15 -0.6
493,638 + Psest_0449 0.16 -0.6
493,638 + Psest_0449 0.16 -3.0
493,638 + Psest_0449 0.16 -2.2
493,639 - Psest_0449 0.16 -1.7
493,639 - Psest_0449 0.16 -3.8
493,639 - Psest_0449 0.16 -2.3
493,639 - Psest_0449 0.16 -1.8
493,639 - Psest_0449 0.16 -1.4
493,639 - Psest_0449 0.16 -2.6
493,667 - Psest_0449 0.17 -2.2
493,742 + Psest_0449 0.19 +0.2
493,743 - Psest_0449 0.19 -1.3
493,947 + Psest_0449 0.26 +0.9
493,947 + Psest_0449 0.26 +1.4
493,947 + Psest_0449 0.26 -0.7
493,948 - Psest_0449 0.26 -2.6
493,948 - Psest_0449 0.26 -1.7
493,948 - Psest_0449 0.26 -2.8
493,948 - Psest_0449 0.26 -3.0
493,971 + Psest_0449 0.27 -2.1
493,971 + Psest_0449 0.27 -1.9
493,971 + Psest_0449 0.27 -1.1
493,971 + Psest_0449 0.27 +1.1
493,971 + Psest_0449 0.27 +0.7
493,971 + Psest_0449 0.27 +0.9
493,972 - Psest_0449 0.27 -0.7
493,972 - Psest_0449 0.27 -0.1
493,972 - Psest_0449 0.27 -1.8
493,972 - Psest_0449 0.27 -3.4
493,975 - Psest_0449 0.27 -2.1
493,975 - Psest_0449 0.27 -0.7
494,086 - Psest_0449 0.31 -3.6
494,095 - Psest_0449 0.31 -2.0
494,095 - Psest_0449 0.31 -2.5
494,316 + Psest_0449 0.39 +0.4
494,316 + Psest_0449 0.39 -1.4
494,316 + Psest_0449 0.39 -1.7
494,316 + Psest_0449 0.39 -1.7
494,316 + Psest_0449 0.39 -2.1
494,317 - Psest_0449 0.39 -3.4
494,317 - Psest_0449 0.39 -3.1
494,371 - Psest_0449 0.41 -2.8
494,579 + Psest_0449 0.48 +0.9
494,579 + Psest_0449 0.48 +1.1
494,580 - Psest_0449 0.48 -0.9
494,580 - Psest_0449 0.48 -1.7
494,865 + Psest_0449 0.57 +0.7
494,866 - Psest_0449 0.57 +1.9
494,872 + Psest_0449 0.58 -1.1
494,873 - Psest_0449 0.58 -2.0
494,873 - Psest_0449 0.58 -0.5
494,873 - Psest_0449 0.58 -2.8
495,000 + Psest_0449 0.62 +0.8
495,177 + Psest_0449 0.68 -2.9
495,492 + Psest_0449 0.79 -2.0
495,492 + Psest_0449 0.79 -4.3
495,492 + Psest_0449 0.79 -1.7
495,492 + Psest_0449 0.79 -0.7
495,492 + Psest_0449 0.79 -0.3
495,493 - Psest_0449 0.79 -3.7
495,493 - Psest_0449 0.79 -0.6
495,854 + -0.1
495,854 + -1.7
495,864 + -1.8
495,909 + -2.5
495,910 - +1.4
495,911 + -0.7
495,911 + -3.0
495,993 + -0.5
496,094 + -1.5
496,094 + -1.2
496,094 + +0.2
496,094 + -1.7
496,268 + Psest_0450 0.10 +1.4
496,460 + Psest_0450 0.31 -0.0
496,460 + Psest_0450 0.31 -0.6
496,481 + Psest_0450 0.33 -1.5
496,481 + Psest_0450 0.33 +0.9
496,559 + Psest_0450 0.42 -0.4
496,559 + Psest_0450 0.42 -2.3
496,664 + Psest_0450 0.53 -0.6
496,664 + Psest_0450 0.53 -1.3
496,664 + Psest_0450 0.53 +2.7
496,664 + Psest_0450 0.53 -3.2
496,664 + Psest_0450 0.53 +1.0
496,664 + Psest_0450 0.53 -0.7
496,742 + Psest_0450 0.62 +0.1
496,796 + Psest_0450 0.68 +1.6
496,796 + Psest_0450 0.68 -1.0
496,796 + Psest_0450 0.68 +1.4
496,796 + Psest_0450 0.68 -1.6
496,796 + Psest_0450 0.68 -2.0
496,796 + Psest_0450 0.68 +0.1
496,878 + Psest_0450 0.76 -1.0
496,878 + Psest_0450 0.76 -0.6
496,910 + Psest_0450 0.80 +0.2
496,910 + Psest_0450 0.80 -1.2
496,910 + Psest_0450 0.80 -0.3
496,910 + Psest_0450 0.80 +1.7
496,910 + Psest_0450 0.80 +1.4
496,910 + Psest_0450 0.80 -0.0
496,910 + Psest_0450 0.80 +0.8
496,910 + Psest_0450 0.80 +0.5
496,910 + Psest_0450 0.80 +1.0
497,033 + +0.0
497,033 + -0.7
497,033 + -0.8
497,093 + -2.3
497,093 + -1.7
497,093 + -0.1
497,093 + -0.6
497,093 + -0.3

Or see this region's nucleotide sequence