Experiment: Choline chloride 90 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4280 and Psest_4281 overlap by 4 nucleotides Psest_4281 and Psest_4282 overlap by 4 nucleotides
Psest_4280: Psest_4280 - ABC-type spermidine/putrescine transport system, permease component II, at 4,471,324 to 4,472,226
_4280
Psest_4281: Psest_4281 - ABC-type spermidine/putrescine transport system, permease component I, at 4,472,223 to 4,473,119
_4281
Psest_4282: Psest_4282 - spermidine/putrescine ABC transporter ATP-binding subunit, at 4,473,116 to 4,474,267
_4282
Position (kb) 4472
4473
4474 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4471.237 kb on - strand at 4471.237 kb on - strand at 4471.265 kb on + strand at 4471.266 kb on - strand at 4471.266 kb on - strand at 4471.329 kb on + strand at 4471.329 kb on + strand at 4471.329 kb on + strand at 4471.330 kb on - strand at 4471.330 kb on - strand at 4471.330 kb on - strand at 4471.330 kb on - strand at 4471.330 kb on - strand at 4471.781 kb on + strand, within Psest_4280 at 4471.909 kb on + strand, within Psest_4280 at 4471.910 kb on - strand, within Psest_4280 at 4472.021 kb on + strand, within Psest_4280 at 4472.022 kb on - strand, within Psest_4280 at 4472.022 kb on - strand, within Psest_4280 at 4472.087 kb on + strand, within Psest_4280 at 4472.144 kb on + strand at 4472.144 kb on + strand at 4472.144 kb on + strand at 4472.144 kb on + strand at 4472.145 kb on - strand at 4472.145 kb on - strand at 4472.145 kb on - strand at 4472.145 kb on - strand at 4472.145 kb on - strand at 4472.171 kb on + strand at 4472.172 kb on - strand at 4472.226 kb on + strand at 4472.226 kb on + strand at 4472.226 kb on + strand at 4472.226 kb on + strand at 4472.226 kb on + strand at 4472.226 kb on + strand at 4472.226 kb on + strand at 4472.227 kb on - strand at 4472.227 kb on - strand at 4472.227 kb on - strand at 4472.227 kb on - strand at 4472.227 kb on - strand at 4472.227 kb on - strand at 4472.227 kb on - strand at 4472.227 kb on - strand at 4472.567 kb on - strand, within Psest_4281 at 4472.593 kb on + strand, within Psest_4281 at 4472.593 kb on + strand, within Psest_4281 at 4472.594 kb on - strand, within Psest_4281 at 4472.594 kb on - strand, within Psest_4281 at 4472.599 kb on + strand, within Psest_4281 at 4472.599 kb on + strand, within Psest_4281 at 4472.599 kb on + strand, within Psest_4281 at 4472.599 kb on + strand, within Psest_4281 at 4472.599 kb on + strand, within Psest_4281 at 4472.599 kb on + strand, within Psest_4281 at 4472.599 kb on + strand, within Psest_4281 at 4472.600 kb on - strand, within Psest_4281 at 4472.614 kb on + strand, within Psest_4281 at 4472.614 kb on + strand, within Psest_4281 at 4472.614 kb on + strand, within Psest_4281 at 4472.614 kb on + strand, within Psest_4281 at 4472.614 kb on + strand, within Psest_4281 at 4472.614 kb on + strand, within Psest_4281 at 4472.614 kb on + strand, within Psest_4281 at 4472.614 kb on + strand, within Psest_4281 at 4472.614 kb on + strand, within Psest_4281 at 4472.614 kb on + strand, within Psest_4281 at 4472.615 kb on - strand, within Psest_4281 at 4472.615 kb on - strand, within Psest_4281 at 4472.682 kb on - strand, within Psest_4281 at 4472.723 kb on - strand, within Psest_4281 at 4472.813 kb on - strand, within Psest_4281 at 4472.813 kb on - strand, within Psest_4281 at 4472.881 kb on + strand, within Psest_4281 at 4472.882 kb on - strand, within Psest_4281 at 4472.893 kb on + strand, within Psest_4281 at 4472.893 kb on + strand, within Psest_4281 at 4472.893 kb on + strand, within Psest_4281 at 4472.893 kb on + strand, within Psest_4281 at 4472.893 kb on + strand, within Psest_4281 at 4472.893 kb on + strand, within Psest_4281 at 4472.894 kb on - strand, within Psest_4281 at 4472.894 kb on - strand, within Psest_4281 at 4472.894 kb on - strand, within Psest_4281 at 4472.894 kb on - strand, within Psest_4281 at 4472.920 kb on + strand, within Psest_4281 at 4472.920 kb on + strand, within Psest_4281 at 4472.920 kb on + strand, within Psest_4281 at 4472.920 kb on + strand, within Psest_4281 at 4472.920 kb on + strand, within Psest_4281 at 4472.920 kb on + strand, within Psest_4281 at 4472.920 kb on + strand, within Psest_4281 at 4472.920 kb on + strand, within Psest_4281 at 4472.920 kb on + strand, within Psest_4281 at 4472.920 kb on + strand, within Psest_4281 at 4472.920 kb on + strand, within Psest_4281 at 4472.920 kb on + strand, within Psest_4281 at 4472.920 kb on + strand, within Psest_4281 at 4472.920 kb on + strand, within Psest_4281 at 4472.920 kb on + strand, within Psest_4281 at 4472.921 kb on - strand, within Psest_4281 at 4472.921 kb on - strand, within Psest_4281 at 4472.921 kb on - strand, within Psest_4281 at 4472.921 kb on - strand, within Psest_4281 at 4472.921 kb on - strand, within Psest_4281 at 4472.921 kb on - strand, within Psest_4281 at 4472.921 kb on - strand, within Psest_4281 at 4472.921 kb on - strand, within Psest_4281 at 4472.921 kb on - strand, within Psest_4281 at 4472.921 kb on - strand, within Psest_4281 at 4472.921 kb on - strand, within Psest_4281 at 4472.940 kb on + strand, within Psest_4281 at 4472.941 kb on - strand, within Psest_4281 at 4472.962 kb on + strand, within Psest_4281 at 4472.962 kb on + strand, within Psest_4281 at 4472.962 kb on + strand, within Psest_4281 at 4472.963 kb on - strand, within Psest_4281 at 4472.978 kb on + strand, within Psest_4281 at 4472.978 kb on + strand, within Psest_4281 at 4472.979 kb on - strand, within Psest_4281 at 4472.979 kb on - strand, within Psest_4281 at 4472.979 kb on - strand, within Psest_4281 at 4472.979 kb on - strand, within Psest_4281 at 4472.979 kb on - strand, within Psest_4281 at 4472.979 kb on - strand, within Psest_4281 at 4472.980 kb on + strand, within Psest_4281 at 4472.981 kb on - strand, within Psest_4281 at 4472.981 kb on - strand, within Psest_4281 at 4472.981 kb on - strand, within Psest_4281 at 4473.098 kb on + strand at 4473.159 kb on + strand at 4473.159 kb on + strand at 4473.159 kb on + strand at 4473.159 kb on + strand at 4473.159 kb on + strand at 4473.159 kb on + strand at 4473.159 kb on + strand at 4473.159 kb on + strand at 4473.159 kb on + strand at 4473.159 kb on + strand at 4473.159 kb on + strand at 4473.159 kb on + strand at 4473.159 kb on + strand at 4473.159 kb on + strand at 4473.159 kb on + strand at 4473.159 kb on + strand at 4473.160 kb on - strand at 4473.160 kb on - strand at 4473.160 kb on - strand at 4473.160 kb on - strand at 4473.160 kb on - strand at 4473.160 kb on - strand at 4473.160 kb on - strand at 4473.160 kb on - strand at 4473.160 kb on - strand at 4473.160 kb on - strand at 4473.160 kb on - strand at 4473.160 kb on - strand at 4473.160 kb on - strand at 4473.160 kb on - strand at 4473.249 kb on + strand, within Psest_4282 at 4473.249 kb on + strand, within Psest_4282 at 4473.249 kb on + strand, within Psest_4282 at 4473.249 kb on + strand, within Psest_4282 at 4473.249 kb on + strand, within Psest_4282 at 4473.249 kb on + strand, within Psest_4282 at 4473.249 kb on + strand, within Psest_4282 at 4473.249 kb on + strand, within Psest_4282 at 4473.249 kb on + strand, within Psest_4282 at 4473.249 kb on + strand, within Psest_4282 at 4473.249 kb on + strand, within Psest_4282 at 4473.249 kb on + strand, within Psest_4282 at 4473.249 kb on + strand, within Psest_4282 at 4473.250 kb on - strand, within Psest_4282 at 4473.250 kb on - strand, within Psest_4282 at 4473.250 kb on - strand, within Psest_4282 at 4473.250 kb on - strand, within Psest_4282 at 4473.250 kb on - strand, within Psest_4282 at 4473.252 kb on + strand, within Psest_4282 at 4473.253 kb on - strand, within Psest_4282 at 4473.253 kb on - strand, within Psest_4282 at 4473.273 kb on + strand, within Psest_4282 at 4473.274 kb on - strand, within Psest_4282 at 4473.309 kb on + strand, within Psest_4282 at 4473.420 kb on + strand, within Psest_4282 at 4473.420 kb on + strand, within Psest_4282 at 4473.420 kb on + strand, within Psest_4282 at 4473.420 kb on + strand, within Psest_4282 at 4473.420 kb on + strand, within Psest_4282 at 4473.420 kb on + strand, within Psest_4282 at 4473.420 kb on + strand, within Psest_4282 at 4473.420 kb on + strand, within Psest_4282 at 4473.420 kb on + strand, within Psest_4282 at 4473.420 kb on + strand, within Psest_4282 at 4473.421 kb on - strand, within Psest_4282 at 4473.421 kb on - strand, within Psest_4282 at 4473.421 kb on - strand, within Psest_4282 at 4473.546 kb on + strand, within Psest_4282 at 4473.546 kb on + strand, within Psest_4282 at 4473.546 kb on + strand, within Psest_4282 at 4473.547 kb on - strand, within Psest_4282 at 4473.547 kb on - strand, within Psest_4282 at 4473.547 kb on - strand, within Psest_4282 at 4473.547 kb on - strand, within Psest_4282 at 4473.547 kb on - strand, within Psest_4282 at 4473.960 kb on + strand, within Psest_4282 at 4473.994 kb on - strand, within Psest_4282 at 4474.069 kb on + strand, within Psest_4282 at 4474.070 kb on - strand, within Psest_4282 at 4474.070 kb on - strand, within Psest_4282
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 90 mM remove 4,471,237 - -1.3 4,471,237 - -0.5 4,471,265 + +1.0 4,471,266 - +0.8 4,471,266 - -0.4 4,471,329 + -0.7 4,471,329 + +1.0 4,471,329 + -0.7 4,471,330 - -1.8 4,471,330 - +1.4 4,471,330 - +0.4 4,471,330 - -0.1 4,471,330 - +0.9 4,471,781 + Psest_4280 0.51 -0.0 4,471,909 + Psest_4280 0.65 -0.1 4,471,910 - Psest_4280 0.65 +1.9 4,472,021 + Psest_4280 0.77 -1.7 4,472,022 - Psest_4280 0.77 +1.3 4,472,022 - Psest_4280 0.77 +1.3 4,472,087 + Psest_4280 0.84 +1.5 4,472,144 + -1.8 4,472,144 + -2.1 4,472,144 + -1.8 4,472,144 + +1.3 4,472,145 - -2.5 4,472,145 - +0.3 4,472,145 - -0.8 4,472,145 - -0.6 4,472,145 - -0.7 4,472,171 + +1.5 4,472,172 - +0.2 4,472,226 + -0.9 4,472,226 + +2.4 4,472,226 + -0.4 4,472,226 + +0.2 4,472,226 + +0.1 4,472,226 + -0.6 4,472,226 + +0.3 4,472,227 - +0.0 4,472,227 - -1.5 4,472,227 - +0.7 4,472,227 - -2.0 4,472,227 - +1.5 4,472,227 - +0.2 4,472,227 - -0.1 4,472,227 - -0.3 4,472,567 - Psest_4281 0.38 -1.8 4,472,593 + Psest_4281 0.41 +1.2 4,472,593 + Psest_4281 0.41 -0.3 4,472,594 - Psest_4281 0.41 -0.7 4,472,594 - Psest_4281 0.41 +1.8 4,472,599 + Psest_4281 0.42 +0.8 4,472,599 + Psest_4281 0.42 -1.6 4,472,599 + Psest_4281 0.42 +0.2 4,472,599 + Psest_4281 0.42 +1.2 4,472,599 + Psest_4281 0.42 +0.6 4,472,599 + Psest_4281 0.42 +0.5 4,472,599 + Psest_4281 0.42 -3.3 4,472,600 - Psest_4281 0.42 -1.8 4,472,614 + Psest_4281 0.44 +2.2 4,472,614 + Psest_4281 0.44 +0.4 4,472,614 + Psest_4281 0.44 -0.3 4,472,614 + Psest_4281 0.44 -1.5 4,472,614 + Psest_4281 0.44 +0.7 4,472,614 + Psest_4281 0.44 +1.7 4,472,614 + Psest_4281 0.44 +0.9 4,472,614 + Psest_4281 0.44 +1.2 4,472,614 + Psest_4281 0.44 +1.8 4,472,614 + Psest_4281 0.44 +1.3 4,472,615 - Psest_4281 0.44 +0.4 4,472,615 - Psest_4281 0.44 -2.2 4,472,682 - Psest_4281 0.51 -0.6 4,472,723 - Psest_4281 0.56 -0.6 4,472,813 - Psest_4281 0.66 +0.0 4,472,813 - Psest_4281 0.66 -0.8 4,472,881 + Psest_4281 0.73 +0.5 4,472,882 - Psest_4281 0.73 -0.7 4,472,893 + Psest_4281 0.75 +0.8 4,472,893 + Psest_4281 0.75 -0.9 4,472,893 + Psest_4281 0.75 -1.8 4,472,893 + Psest_4281 0.75 +0.3 4,472,893 + Psest_4281 0.75 +1.8 4,472,893 + Psest_4281 0.75 +3.6 4,472,894 - Psest_4281 0.75 -0.3 4,472,894 - Psest_4281 0.75 -0.3 4,472,894 - Psest_4281 0.75 -1.0 4,472,894 - Psest_4281 0.75 +3.3 4,472,920 + Psest_4281 0.78 -0.7 4,472,920 + Psest_4281 0.78 -0.1 4,472,920 + Psest_4281 0.78 -0.8 4,472,920 + Psest_4281 0.78 -1.0 4,472,920 + Psest_4281 0.78 +1.8 4,472,920 + Psest_4281 0.78 -0.0 4,472,920 + Psest_4281 0.78 -0.1 4,472,920 + Psest_4281 0.78 +1.4 4,472,920 + Psest_4281 0.78 -0.7 4,472,920 + Psest_4281 0.78 -2.8 4,472,920 + Psest_4281 0.78 -1.1 4,472,920 + Psest_4281 0.78 -0.7 4,472,920 + Psest_4281 0.78 +0.5 4,472,920 + Psest_4281 0.78 -1.1 4,472,920 + Psest_4281 0.78 -0.5 4,472,921 - Psest_4281 0.78 +0.8 4,472,921 - Psest_4281 0.78 +1.1 4,472,921 - Psest_4281 0.78 -0.6 4,472,921 - Psest_4281 0.78 +1.7 4,472,921 - Psest_4281 0.78 +1.5 4,472,921 - Psest_4281 0.78 -1.7 4,472,921 - Psest_4281 0.78 +0.9 4,472,921 - Psest_4281 0.78 +2.5 4,472,921 - Psest_4281 0.78 -0.4 4,472,921 - Psest_4281 0.78 +0.4 4,472,921 - Psest_4281 0.78 -0.7 4,472,940 + Psest_4281 0.80 -1.5 4,472,941 - Psest_4281 0.80 -0.8 4,472,962 + Psest_4281 0.82 -1.2 4,472,962 + Psest_4281 0.82 -0.7 4,472,962 + Psest_4281 0.82 +1.0 4,472,963 - Psest_4281 0.82 +0.6 4,472,978 + Psest_4281 0.84 -0.1 4,472,978 + Psest_4281 0.84 +0.3 4,472,979 - Psest_4281 0.84 -1.9 4,472,979 - Psest_4281 0.84 -0.8 4,472,979 - Psest_4281 0.84 +1.0 4,472,979 - Psest_4281 0.84 -2.8 4,472,979 - Psest_4281 0.84 +2.8 4,472,979 - Psest_4281 0.84 -2.5 4,472,980 + Psest_4281 0.84 +1.1 4,472,981 - Psest_4281 0.85 -0.7 4,472,981 - Psest_4281 0.85 -0.5 4,472,981 - Psest_4281 0.85 +1.2 4,473,098 + -0.2 4,473,159 + -1.0 4,473,159 + +0.9 4,473,159 + -1.3 4,473,159 + -1.4 4,473,159 + +0.7 4,473,159 + -0.5 4,473,159 + +0.1 4,473,159 + +0.7 4,473,159 + -2.5 4,473,159 + -0.8 4,473,159 + -0.6 4,473,159 + +1.9 4,473,159 + -1.7 4,473,159 + -0.7 4,473,159 + -0.0 4,473,159 + -0.9 4,473,160 - +1.4 4,473,160 - -0.6 4,473,160 - +1.3 4,473,160 - +1.4 4,473,160 - +2.2 4,473,160 - +0.9 4,473,160 - -1.7 4,473,160 - -0.1 4,473,160 - -2.7 4,473,160 - +0.8 4,473,160 - -1.3 4,473,160 - +0.3 4,473,160 - +0.6 4,473,160 - -3.6 4,473,249 + Psest_4282 0.12 +1.1 4,473,249 + Psest_4282 0.12 +1.5 4,473,249 + Psest_4282 0.12 +1.2 4,473,249 + Psest_4282 0.12 -2.2 4,473,249 + Psest_4282 0.12 -1.7 4,473,249 + Psest_4282 0.12 -1.9 4,473,249 + Psest_4282 0.12 -0.2 4,473,249 + Psest_4282 0.12 +0.4 4,473,249 + Psest_4282 0.12 +0.9 4,473,249 + Psest_4282 0.12 +0.9 4,473,249 + Psest_4282 0.12 -1.8 4,473,249 + Psest_4282 0.12 +0.0 4,473,249 + Psest_4282 0.12 -1.0 4,473,250 - Psest_4282 0.12 +0.8 4,473,250 - Psest_4282 0.12 +0.7 4,473,250 - Psest_4282 0.12 +3.7 4,473,250 - Psest_4282 0.12 -1.4 4,473,250 - Psest_4282 0.12 +1.2 4,473,252 + Psest_4282 0.12 +1.0 4,473,253 - Psest_4282 0.12 -0.4 4,473,253 - Psest_4282 0.12 -1.5 4,473,273 + Psest_4282 0.14 -1.7 4,473,274 - Psest_4282 0.14 -0.1 4,473,309 + Psest_4282 0.17 -0.5 4,473,420 + Psest_4282 0.26 +0.9 4,473,420 + Psest_4282 0.26 -0.1 4,473,420 + Psest_4282 0.26 -0.3 4,473,420 + Psest_4282 0.26 -0.3 4,473,420 + Psest_4282 0.26 +0.2 4,473,420 + Psest_4282 0.26 +0.6 4,473,420 + Psest_4282 0.26 -0.7 4,473,420 + Psest_4282 0.26 -0.6 4,473,420 + Psest_4282 0.26 +5.0 4,473,420 + Psest_4282 0.26 -1.8 4,473,421 - Psest_4282 0.26 +0.1 4,473,421 - Psest_4282 0.26 +0.9 4,473,421 - Psest_4282 0.26 +0.8 4,473,546 + Psest_4282 0.37 -1.7 4,473,546 + Psest_4282 0.37 -2.7 4,473,546 + Psest_4282 0.37 +0.7 4,473,547 - Psest_4282 0.37 -0.6 4,473,547 - Psest_4282 0.37 -0.5 4,473,547 - Psest_4282 0.37 +1.8 4,473,547 - Psest_4282 0.37 +0.2 4,473,547 - Psest_4282 0.37 +0.4 4,473,960 + Psest_4282 0.73 -0.6 4,473,994 - Psest_4282 0.76 +1.7 4,474,069 + Psest_4282 0.83 +2.5 4,474,070 - Psest_4282 0.83 +1.6 4,474,070 - Psest_4282 0.83 +2.0
Or see this region's nucleotide sequence