Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4097

Experiment: Choline chloride 90 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4096 and Psest_4097 are separated by 33 nucleotidesPsest_4097 and Psest_4098 are separated by 251 nucleotides Psest_4096: Psest_4096 - Collagenase and related proteases, at 4,272,220 to 4,273,593 _4096 Psest_4097: Psest_4097 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 4,273,627 to 4,276,479 _4097 Psest_4098: Psest_4098 - Superfamily I DNA and RNA helicases, at 4,276,731 to 4,278,920 _4098 Position (kb) 4273 4274 4275 4276 4277Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4272.745 kb on + strand, within Psest_4096at 4272.745 kb on + strand, within Psest_4096at 4272.745 kb on + strand, within Psest_4096at 4272.745 kb on + strand, within Psest_4096at 4272.746 kb on - strand, within Psest_4096at 4272.829 kb on + strand, within Psest_4096at 4272.829 kb on + strand, within Psest_4096at 4272.829 kb on + strand, within Psest_4096at 4272.829 kb on + strand, within Psest_4096at 4272.830 kb on - strand, within Psest_4096at 4272.830 kb on - strand, within Psest_4096at 4272.830 kb on - strand, within Psest_4096at 4272.830 kb on - strand, within Psest_4096at 4272.880 kb on + strand, within Psest_4096at 4272.880 kb on + strand, within Psest_4096at 4272.880 kb on + strand, within Psest_4096at 4272.881 kb on - strand, within Psest_4096at 4273.027 kb on + strand, within Psest_4096at 4273.027 kb on + strand, within Psest_4096at 4273.027 kb on + strand, within Psest_4096at 4273.027 kb on + strand, within Psest_4096at 4273.027 kb on + strand, within Psest_4096at 4273.027 kb on + strand, within Psest_4096at 4273.027 kb on + strand, within Psest_4096at 4273.027 kb on + strand, within Psest_4096at 4273.027 kb on + strand, within Psest_4096at 4273.027 kb on + strand, within Psest_4096at 4273.027 kb on + strand, within Psest_4096at 4273.027 kb on + strand, within Psest_4096at 4273.027 kb on + strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.129 kb on + strand, within Psest_4096at 4273.129 kb on + strand, within Psest_4096at 4273.130 kb on - strand, within Psest_4096at 4273.132 kb on + strand, within Psest_4096at 4273.132 kb on + strand, within Psest_4096at 4273.132 kb on + strand, within Psest_4096at 4273.132 kb on + strand, within Psest_4096at 4273.132 kb on + strand, within Psest_4096at 4273.132 kb on + strand, within Psest_4096at 4273.132 kb on + strand, within Psest_4096at 4273.133 kb on - strand, within Psest_4096at 4273.133 kb on - strand, within Psest_4096at 4273.133 kb on - strand, within Psest_4096at 4273.133 kb on - strand, within Psest_4096at 4273.291 kb on + strand, within Psest_4096at 4273.291 kb on + strand, within Psest_4096at 4273.291 kb on + strand, within Psest_4096at 4273.291 kb on + strand, within Psest_4096at 4273.291 kb on + strand, within Psest_4096at 4273.292 kb on - strand, within Psest_4096at 4273.292 kb on - strand, within Psest_4096at 4273.292 kb on - strand, within Psest_4096at 4273.292 kb on - strand, within Psest_4096at 4273.292 kb on - strand, within Psest_4096at 4273.514 kb on - strandat 4273.679 kb on + strandat 4273.680 kb on - strandat 4273.680 kb on - strandat 4273.859 kb on + strandat 4273.859 kb on + strandat 4273.859 kb on + strandat 4273.860 kb on - strandat 4273.883 kb on + strandat 4273.883 kb on + strandat 4273.884 kb on - strandat 4274.083 kb on + strand, within Psest_4097at 4274.084 kb on - strand, within Psest_4097at 4274.084 kb on - strand, within Psest_4097at 4274.084 kb on - strand, within Psest_4097at 4274.324 kb on + strand, within Psest_4097at 4274.324 kb on + strand, within Psest_4097at 4274.324 kb on + strand, within Psest_4097at 4274.324 kb on + strand, within Psest_4097at 4274.325 kb on - strand, within Psest_4097at 4274.630 kb on + strand, within Psest_4097at 4274.792 kb on + strand, within Psest_4097at 4274.792 kb on + strand, within Psest_4097at 4274.792 kb on + strand, within Psest_4097at 4274.792 kb on + strand, within Psest_4097at 4274.792 kb on + strand, within Psest_4097at 4274.792 kb on + strand, within Psest_4097at 4274.792 kb on + strand, within Psest_4097at 4274.793 kb on - strand, within Psest_4097at 4274.793 kb on - strand, within Psest_4097at 4274.793 kb on - strand, within Psest_4097at 4274.793 kb on - strand, within Psest_4097at 4274.793 kb on - strand, within Psest_4097at 4274.793 kb on - strand, within Psest_4097at 4274.793 kb on - strand, within Psest_4097at 4274.793 kb on - strand, within Psest_4097at 4274.793 kb on - strand, within Psest_4097at 4274.793 kb on - strand, within Psest_4097at 4274.793 kb on - strand, within Psest_4097at 4274.793 kb on - strand, within Psest_4097at 4274.793 kb on - strand, within Psest_4097at 4274.824 kb on + strand, within Psest_4097at 4274.825 kb on - strand, within Psest_4097at 4274.935 kb on + strand, within Psest_4097at 4275.101 kb on + strand, within Psest_4097at 4275.102 kb on - strand, within Psest_4097at 4275.216 kb on - strand, within Psest_4097at 4275.581 kb on - strand, within Psest_4097at 4275.581 kb on - strand, within Psest_4097at 4275.581 kb on - strand, within Psest_4097at 4275.581 kb on - strand, within Psest_4097at 4275.728 kb on + strand, within Psest_4097at 4275.728 kb on + strand, within Psest_4097at 4275.728 kb on + strand, within Psest_4097at 4275.728 kb on + strand, within Psest_4097at 4275.728 kb on + strand, within Psest_4097at 4275.728 kb on + strand, within Psest_4097at 4275.728 kb on + strand, within Psest_4097at 4275.729 kb on - strand, within Psest_4097at 4275.729 kb on - strand, within Psest_4097at 4275.729 kb on - strand, within Psest_4097at 4275.729 kb on - strand, within Psest_4097at 4275.729 kb on - strand, within Psest_4097at 4275.729 kb on - strand, within Psest_4097at 4276.040 kb on + strand, within Psest_4097at 4276.082 kb on + strand, within Psest_4097at 4276.082 kb on + strand, within Psest_4097at 4276.083 kb on - strand, within Psest_4097at 4276.136 kb on + strand, within Psest_4097at 4276.288 kb on + strandat 4276.288 kb on + strandat 4276.288 kb on + strandat 4276.288 kb on + strandat 4276.288 kb on + strandat 4276.289 kb on - strandat 4276.289 kb on - strandat 4276.355 kb on - strandat 4276.380 kb on - strandat 4276.393 kb on - strandat 4276.491 kb on + strandat 4276.491 kb on + strandat 4276.491 kb on + strandat 4276.491 kb on + strandat 4276.491 kb on + strandat 4276.491 kb on + strandat 4276.491 kb on + strandat 4276.491 kb on + strandat 4276.492 kb on - strandat 4276.492 kb on - strandat 4276.492 kb on - strandat 4276.492 kb on - strandat 4276.492 kb on - strandat 4276.492 kb on - strandat 4276.492 kb on - strandat 4276.492 kb on - strandat 4276.492 kb on - strandat 4276.492 kb on - strandat 4276.492 kb on - strandat 4276.492 kb on - strandat 4276.492 kb on - strandat 4276.492 kb on - strandat 4276.719 kb on + strandat 4276.720 kb on - strandat 4276.720 kb on - strandat 4276.720 kb on - strandat 4276.720 kb on - strandat 4276.720 kb on - strandat 4276.955 kb on + strand, within Psest_4098at 4276.956 kb on - strand, within Psest_4098at 4277.257 kb on - strand, within Psest_4098at 4277.266 kb on - strand, within Psest_4098at 4277.266 kb on - strand, within Psest_4098

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 90 mM
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4,272,745 + Psest_4096 0.38 +0.4
4,272,745 + Psest_4096 0.38 -0.3
4,272,745 + Psest_4096 0.38 -2.9
4,272,745 + Psest_4096 0.38 +0.6
4,272,746 - Psest_4096 0.38 +1.5
4,272,829 + Psest_4096 0.44 -1.4
4,272,829 + Psest_4096 0.44 +2.4
4,272,829 + Psest_4096 0.44 -1.5
4,272,829 + Psest_4096 0.44 -0.7
4,272,830 - Psest_4096 0.44 +0.7
4,272,830 - Psest_4096 0.44 +0.3
4,272,830 - Psest_4096 0.44 +0.4
4,272,830 - Psest_4096 0.44 -0.3
4,272,880 + Psest_4096 0.48 +1.7
4,272,880 + Psest_4096 0.48 -0.6
4,272,880 + Psest_4096 0.48 +1.5
4,272,881 - Psest_4096 0.48 -0.1
4,273,027 + Psest_4096 0.59 +1.2
4,273,027 + Psest_4096 0.59 -0.6
4,273,027 + Psest_4096 0.59 +2.1
4,273,027 + Psest_4096 0.59 -2.4
4,273,027 + Psest_4096 0.59 +1.1
4,273,027 + Psest_4096 0.59 +1.9
4,273,027 + Psest_4096 0.59 +0.3
4,273,027 + Psest_4096 0.59 +0.6
4,273,027 + Psest_4096 0.59 -0.0
4,273,027 + Psest_4096 0.59 -0.5
4,273,027 + Psest_4096 0.59 -0.0
4,273,027 + Psest_4096 0.59 -1.7
4,273,027 + Psest_4096 0.59 +1.0
4,273,028 - Psest_4096 0.59 +2.2
4,273,028 - Psest_4096 0.59 +1.3
4,273,028 - Psest_4096 0.59 +1.5
4,273,028 - Psest_4096 0.59 +0.8
4,273,028 - Psest_4096 0.59 -0.8
4,273,028 - Psest_4096 0.59 -1.0
4,273,028 - Psest_4096 0.59 +2.9
4,273,028 - Psest_4096 0.59 -0.6
4,273,028 - Psest_4096 0.59 -0.5
4,273,028 - Psest_4096 0.59 +0.3
4,273,028 - Psest_4096 0.59 -0.9
4,273,028 - Psest_4096 0.59 -0.0
4,273,028 - Psest_4096 0.59 -1.7
4,273,028 - Psest_4096 0.59 -1.2
4,273,028 - Psest_4096 0.59 +0.0
4,273,028 - Psest_4096 0.59 -1.5
4,273,028 - Psest_4096 0.59 -0.0
4,273,028 - Psest_4096 0.59 +0.6
4,273,129 + Psest_4096 0.66 -0.2
4,273,129 + Psest_4096 0.66 -1.1
4,273,130 - Psest_4096 0.66 +1.9
4,273,132 + Psest_4096 0.66 -0.6
4,273,132 + Psest_4096 0.66 -0.4
4,273,132 + Psest_4096 0.66 +2.3
4,273,132 + Psest_4096 0.66 +2.4
4,273,132 + Psest_4096 0.66 +0.0
4,273,132 + Psest_4096 0.66 -0.0
4,273,132 + Psest_4096 0.66 +0.1
4,273,133 - Psest_4096 0.66 +1.9
4,273,133 - Psest_4096 0.66 +0.8
4,273,133 - Psest_4096 0.66 -1.3
4,273,133 - Psest_4096 0.66 -0.2
4,273,291 + Psest_4096 0.78 -1.6
4,273,291 + Psest_4096 0.78 +0.4
4,273,291 + Psest_4096 0.78 -0.7
4,273,291 + Psest_4096 0.78 -0.4
4,273,291 + Psest_4096 0.78 +2.5
4,273,292 - Psest_4096 0.78 -0.4
4,273,292 - Psest_4096 0.78 -1.0
4,273,292 - Psest_4096 0.78 +0.7
4,273,292 - Psest_4096 0.78 -2.0
4,273,292 - Psest_4096 0.78 +2.3
4,273,514 - +1.6
4,273,679 + -2.3
4,273,680 - +1.2
4,273,680 - -0.1
4,273,859 + +0.2
4,273,859 + +0.3
4,273,859 + +1.3
4,273,860 - +0.5
4,273,883 + -0.3
4,273,883 + +1.6
4,273,884 - +0.1
4,274,083 + Psest_4097 0.16 -0.3
4,274,084 - Psest_4097 0.16 +2.2
4,274,084 - Psest_4097 0.16 +0.5
4,274,084 - Psest_4097 0.16 +1.2
4,274,324 + Psest_4097 0.24 +2.1
4,274,324 + Psest_4097 0.24 -0.6
4,274,324 + Psest_4097 0.24 +0.2
4,274,324 + Psest_4097 0.24 -0.8
4,274,325 - Psest_4097 0.24 -2.7
4,274,630 + Psest_4097 0.35 -0.9
4,274,792 + Psest_4097 0.41 +0.1
4,274,792 + Psest_4097 0.41 +1.6
4,274,792 + Psest_4097 0.41 -0.2
4,274,792 + Psest_4097 0.41 -1.9
4,274,792 + Psest_4097 0.41 +1.6
4,274,792 + Psest_4097 0.41 +1.0
4,274,792 + Psest_4097 0.41 -0.3
4,274,793 - Psest_4097 0.41 -1.5
4,274,793 - Psest_4097 0.41 -2.0
4,274,793 - Psest_4097 0.41 -1.7
4,274,793 - Psest_4097 0.41 +0.6
4,274,793 - Psest_4097 0.41 +1.2
4,274,793 - Psest_4097 0.41 -1.4
4,274,793 - Psest_4097 0.41 -1.8
4,274,793 - Psest_4097 0.41 +1.4
4,274,793 - Psest_4097 0.41 -1.0
4,274,793 - Psest_4097 0.41 +0.8
4,274,793 - Psest_4097 0.41 +0.1
4,274,793 - Psest_4097 0.41 -0.0
4,274,793 - Psest_4097 0.41 -2.2
4,274,824 + Psest_4097 0.42 +0.5
4,274,825 - Psest_4097 0.42 -0.7
4,274,935 + Psest_4097 0.46 -1.4
4,275,101 + Psest_4097 0.52 -0.1
4,275,102 - Psest_4097 0.52 -0.7
4,275,216 - Psest_4097 0.56 -1.2
4,275,581 - Psest_4097 0.68 -0.1
4,275,581 - Psest_4097 0.68 -0.1
4,275,581 - Psest_4097 0.68 -0.2
4,275,581 - Psest_4097 0.68 +3.7
4,275,728 + Psest_4097 0.74 -0.9
4,275,728 + Psest_4097 0.74 +0.5
4,275,728 + Psest_4097 0.74 -2.4
4,275,728 + Psest_4097 0.74 -0.3
4,275,728 + Psest_4097 0.74 -0.2
4,275,728 + Psest_4097 0.74 +0.9
4,275,728 + Psest_4097 0.74 -0.2
4,275,729 - Psest_4097 0.74 +0.6
4,275,729 - Psest_4097 0.74 -1.2
4,275,729 - Psest_4097 0.74 -0.7
4,275,729 - Psest_4097 0.74 +0.5
4,275,729 - Psest_4097 0.74 +1.5
4,275,729 - Psest_4097 0.74 -0.3
4,276,040 + Psest_4097 0.85 +1.8
4,276,082 + Psest_4097 0.86 -1.1
4,276,082 + Psest_4097 0.86 -1.4
4,276,083 - Psest_4097 0.86 +1.3
4,276,136 + Psest_4097 0.88 +0.4
4,276,288 + -3.7
4,276,288 + -0.2
4,276,288 + -1.3
4,276,288 + +0.1
4,276,288 + +0.1
4,276,289 - -0.4
4,276,289 - +0.6
4,276,355 - +0.7
4,276,380 - +0.9
4,276,393 - -0.1
4,276,491 + +0.9
4,276,491 + +0.8
4,276,491 + +1.1
4,276,491 + +1.5
4,276,491 + -1.9
4,276,491 + -0.4
4,276,491 + -0.1
4,276,491 + +3.5
4,276,492 - -1.0
4,276,492 - -0.4
4,276,492 - +0.6
4,276,492 - -0.2
4,276,492 - +0.1
4,276,492 - -1.3
4,276,492 - -0.4
4,276,492 - -2.0
4,276,492 - -1.7
4,276,492 - +3.0
4,276,492 - -0.2
4,276,492 - -2.1
4,276,492 - -0.3
4,276,492 - +0.1
4,276,719 + +1.9
4,276,720 - +1.7
4,276,720 - +0.4
4,276,720 - -0.1
4,276,720 - -1.2
4,276,720 - -1.3
4,276,955 + Psest_4098 0.10 -0.4
4,276,956 - Psest_4098 0.10 +1.4
4,277,257 - Psest_4098 0.24 +0.8
4,277,266 - Psest_4098 0.24 +0.4
4,277,266 - Psest_4098 0.24 +1.4

Or see this region's nucleotide sequence