Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4096

Experiment: Choline chloride 90 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4094 and Psest_4095 are separated by 164 nucleotidesPsest_4095 and Psest_4096 are separated by 125 nucleotidesPsest_4096 and Psest_4097 are separated by 33 nucleotides Psest_4094: Psest_4094 - Aspartokinases, at 4,270,281 to 4,271,711 _4094 Psest_4095: Psest_4095 - Uncharacterized protein conserved in bacteria, at 4,271,876 to 4,272,094 _4095 Psest_4096: Psest_4096 - Collagenase and related proteases, at 4,272,220 to 4,273,593 _4096 Psest_4097: Psest_4097 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 4,273,627 to 4,276,479 _4097 Position (kb) 4272 4273 4274Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4271.352 kb on + strand, within Psest_4094at 4271.352 kb on + strand, within Psest_4094at 4271.352 kb on + strand, within Psest_4094at 4271.352 kb on + strand, within Psest_4094at 4271.352 kb on + strand, within Psest_4094at 4271.352 kb on + strand, within Psest_4094at 4271.353 kb on - strand, within Psest_4094at 4271.353 kb on - strand, within Psest_4094at 4271.353 kb on - strand, within Psest_4094at 4271.353 kb on - strand, within Psest_4094at 4271.391 kb on + strand, within Psest_4094at 4271.391 kb on + strand, within Psest_4094at 4271.391 kb on + strand, within Psest_4094at 4271.392 kb on - strand, within Psest_4094at 4271.392 kb on - strand, within Psest_4094at 4271.394 kb on + strand, within Psest_4094at 4271.395 kb on - strand, within Psest_4094at 4271.634 kb on + strandat 4271.634 kb on + strandat 4271.634 kb on + strandat 4271.635 kb on - strandat 4271.635 kb on - strandat 4271.635 kb on - strandat 4271.635 kb on - strandat 4271.635 kb on - strandat 4271.805 kb on - strandat 4271.860 kb on + strandat 4271.860 kb on + strandat 4271.861 kb on - strandat 4271.910 kb on + strand, within Psest_4095at 4271.911 kb on - strand, within Psest_4095at 4272.062 kb on + strand, within Psest_4095at 4272.063 kb on - strand, within Psest_4095at 4272.063 kb on - strand, within Psest_4095at 4272.310 kb on + strandat 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.419 kb on + strand, within Psest_4096at 4272.419 kb on + strand, within Psest_4096at 4272.419 kb on + strand, within Psest_4096at 4272.419 kb on + strand, within Psest_4096at 4272.419 kb on + strand, within Psest_4096at 4272.419 kb on + strand, within Psest_4096at 4272.419 kb on + strand, within Psest_4096at 4272.420 kb on - strand, within Psest_4096at 4272.420 kb on - strand, within Psest_4096at 4272.420 kb on - strand, within Psest_4096at 4272.420 kb on - strand, within Psest_4096at 4272.420 kb on - strand, within Psest_4096at 4272.745 kb on + strand, within Psest_4096at 4272.745 kb on + strand, within Psest_4096at 4272.745 kb on + strand, within Psest_4096at 4272.745 kb on + strand, within Psest_4096at 4272.746 kb on - strand, within Psest_4096at 4272.829 kb on + strand, within Psest_4096at 4272.829 kb on + strand, within Psest_4096at 4272.829 kb on + strand, within Psest_4096at 4272.829 kb on + strand, within Psest_4096at 4272.830 kb on - strand, within Psest_4096at 4272.830 kb on - strand, within Psest_4096at 4272.830 kb on - strand, within Psest_4096at 4272.830 kb on - strand, within Psest_4096at 4272.880 kb on + strand, within Psest_4096at 4272.880 kb on + strand, within Psest_4096at 4272.880 kb on + strand, within Psest_4096at 4272.881 kb on - strand, within Psest_4096at 4273.027 kb on + strand, within Psest_4096at 4273.027 kb on + strand, within Psest_4096at 4273.027 kb on + strand, within Psest_4096at 4273.027 kb on + strand, within Psest_4096at 4273.027 kb on + strand, within Psest_4096at 4273.027 kb on + strand, within Psest_4096at 4273.027 kb on + strand, within Psest_4096at 4273.027 kb on + strand, within Psest_4096at 4273.027 kb on + strand, within Psest_4096at 4273.027 kb on + strand, within Psest_4096at 4273.027 kb on + strand, within Psest_4096at 4273.027 kb on + strand, within Psest_4096at 4273.027 kb on + strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.028 kb on - strand, within Psest_4096at 4273.129 kb on + strand, within Psest_4096at 4273.129 kb on + strand, within Psest_4096at 4273.130 kb on - strand, within Psest_4096at 4273.132 kb on + strand, within Psest_4096at 4273.132 kb on + strand, within Psest_4096at 4273.132 kb on + strand, within Psest_4096at 4273.132 kb on + strand, within Psest_4096at 4273.132 kb on + strand, within Psest_4096at 4273.132 kb on + strand, within Psest_4096at 4273.132 kb on + strand, within Psest_4096at 4273.133 kb on - strand, within Psest_4096at 4273.133 kb on - strand, within Psest_4096at 4273.133 kb on - strand, within Psest_4096at 4273.133 kb on - strand, within Psest_4096at 4273.291 kb on + strand, within Psest_4096at 4273.291 kb on + strand, within Psest_4096at 4273.291 kb on + strand, within Psest_4096at 4273.291 kb on + strand, within Psest_4096at 4273.291 kb on + strand, within Psest_4096at 4273.292 kb on - strand, within Psest_4096at 4273.292 kb on - strand, within Psest_4096at 4273.292 kb on - strand, within Psest_4096at 4273.292 kb on - strand, within Psest_4096at 4273.292 kb on - strand, within Psest_4096at 4273.514 kb on - strandat 4273.679 kb on + strandat 4273.680 kb on - strandat 4273.680 kb on - strandat 4273.859 kb on + strandat 4273.859 kb on + strandat 4273.859 kb on + strandat 4273.860 kb on - strandat 4273.883 kb on + strandat 4273.883 kb on + strandat 4273.884 kb on - strandat 4274.083 kb on + strand, within Psest_4097at 4274.084 kb on - strand, within Psest_4097at 4274.084 kb on - strand, within Psest_4097at 4274.084 kb on - strand, within Psest_4097at 4274.324 kb on + strand, within Psest_4097at 4274.324 kb on + strand, within Psest_4097at 4274.324 kb on + strand, within Psest_4097at 4274.324 kb on + strand, within Psest_4097at 4274.325 kb on - strand, within Psest_4097

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 90 mM
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4,271,352 + Psest_4094 0.75 +0.7
4,271,352 + Psest_4094 0.75 +2.0
4,271,352 + Psest_4094 0.75 +0.2
4,271,352 + Psest_4094 0.75 +0.5
4,271,352 + Psest_4094 0.75 -0.8
4,271,352 + Psest_4094 0.75 -1.3
4,271,353 - Psest_4094 0.75 -0.8
4,271,353 - Psest_4094 0.75 -1.3
4,271,353 - Psest_4094 0.75 -0.9
4,271,353 - Psest_4094 0.75 -2.7
4,271,391 + Psest_4094 0.78 -2.7
4,271,391 + Psest_4094 0.78 +0.9
4,271,391 + Psest_4094 0.78 +2.4
4,271,392 - Psest_4094 0.78 +0.3
4,271,392 - Psest_4094 0.78 +0.7
4,271,394 + Psest_4094 0.78 +0.9
4,271,395 - Psest_4094 0.78 -0.3
4,271,634 + -0.5
4,271,634 + -0.9
4,271,634 + +3.7
4,271,635 - -0.3
4,271,635 - -0.6
4,271,635 - +0.2
4,271,635 - -1.7
4,271,635 - +1.4
4,271,805 - +1.7
4,271,860 + +0.1
4,271,860 + -1.5
4,271,861 - +0.2
4,271,910 + Psest_4095 0.16 -1.0
4,271,911 - Psest_4095 0.16 +0.1
4,272,062 + Psest_4095 0.85 +0.5
4,272,063 - Psest_4095 0.85 -1.0
4,272,063 - Psest_4095 0.85 -0.7
4,272,310 + -0.5
4,272,415 + Psest_4096 0.14 +0.8
4,272,415 + Psest_4096 0.14 -0.5
4,272,415 + Psest_4096 0.14 +0.8
4,272,415 + Psest_4096 0.14 -2.0
4,272,415 + Psest_4096 0.14 +0.2
4,272,415 + Psest_4096 0.14 -0.3
4,272,415 + Psest_4096 0.14 +1.2
4,272,415 + Psest_4096 0.14 -0.2
4,272,415 + Psest_4096 0.14 +1.7
4,272,415 + Psest_4096 0.14 +0.0
4,272,415 + Psest_4096 0.14 +1.5
4,272,415 + Psest_4096 0.14 +0.6
4,272,415 + Psest_4096 0.14 -0.6
4,272,415 + Psest_4096 0.14 -1.2
4,272,415 + Psest_4096 0.14 +1.0
4,272,415 + Psest_4096 0.14 -0.7
4,272,416 - Psest_4096 0.14 -2.0
4,272,416 - Psest_4096 0.14 +2.0
4,272,416 - Psest_4096 0.14 -0.4
4,272,416 - Psest_4096 0.14 -2.6
4,272,416 - Psest_4096 0.14 -1.6
4,272,416 - Psest_4096 0.14 -0.7
4,272,416 - Psest_4096 0.14 -1.4
4,272,416 - Psest_4096 0.14 -1.2
4,272,416 - Psest_4096 0.14 -3.0
4,272,416 - Psest_4096 0.14 +1.6
4,272,416 - Psest_4096 0.14 +0.9
4,272,416 - Psest_4096 0.14 +2.7
4,272,416 - Psest_4096 0.14 +0.2
4,272,416 - Psest_4096 0.14 -0.2
4,272,416 - Psest_4096 0.14 +1.1
4,272,416 - Psest_4096 0.14 +0.1
4,272,416 - Psest_4096 0.14 +2.6
4,272,419 + Psest_4096 0.14 +1.0
4,272,419 + Psest_4096 0.14 -0.9
4,272,419 + Psest_4096 0.14 +1.5
4,272,419 + Psest_4096 0.14 -0.8
4,272,419 + Psest_4096 0.14 +0.7
4,272,419 + Psest_4096 0.14 +2.1
4,272,419 + Psest_4096 0.14 +0.7
4,272,420 - Psest_4096 0.15 +0.4
4,272,420 - Psest_4096 0.15 -0.3
4,272,420 - Psest_4096 0.15 +0.9
4,272,420 - Psest_4096 0.15 +1.8
4,272,420 - Psest_4096 0.15 +0.5
4,272,745 + Psest_4096 0.38 +0.4
4,272,745 + Psest_4096 0.38 -0.3
4,272,745 + Psest_4096 0.38 -2.9
4,272,745 + Psest_4096 0.38 +0.6
4,272,746 - Psest_4096 0.38 +1.5
4,272,829 + Psest_4096 0.44 -1.4
4,272,829 + Psest_4096 0.44 +2.4
4,272,829 + Psest_4096 0.44 -1.5
4,272,829 + Psest_4096 0.44 -0.7
4,272,830 - Psest_4096 0.44 +0.7
4,272,830 - Psest_4096 0.44 +0.3
4,272,830 - Psest_4096 0.44 +0.4
4,272,830 - Psest_4096 0.44 -0.3
4,272,880 + Psest_4096 0.48 +1.7
4,272,880 + Psest_4096 0.48 -0.6
4,272,880 + Psest_4096 0.48 +1.5
4,272,881 - Psest_4096 0.48 -0.1
4,273,027 + Psest_4096 0.59 +1.2
4,273,027 + Psest_4096 0.59 -0.6
4,273,027 + Psest_4096 0.59 +2.1
4,273,027 + Psest_4096 0.59 -2.4
4,273,027 + Psest_4096 0.59 +1.1
4,273,027 + Psest_4096 0.59 +1.9
4,273,027 + Psest_4096 0.59 +0.3
4,273,027 + Psest_4096 0.59 +0.6
4,273,027 + Psest_4096 0.59 -0.0
4,273,027 + Psest_4096 0.59 -0.5
4,273,027 + Psest_4096 0.59 -0.0
4,273,027 + Psest_4096 0.59 -1.7
4,273,027 + Psest_4096 0.59 +1.0
4,273,028 - Psest_4096 0.59 +2.2
4,273,028 - Psest_4096 0.59 +1.3
4,273,028 - Psest_4096 0.59 +1.5
4,273,028 - Psest_4096 0.59 +0.8
4,273,028 - Psest_4096 0.59 -0.8
4,273,028 - Psest_4096 0.59 -1.0
4,273,028 - Psest_4096 0.59 +2.9
4,273,028 - Psest_4096 0.59 -0.6
4,273,028 - Psest_4096 0.59 -0.5
4,273,028 - Psest_4096 0.59 +0.3
4,273,028 - Psest_4096 0.59 -0.9
4,273,028 - Psest_4096 0.59 -0.0
4,273,028 - Psest_4096 0.59 -1.7
4,273,028 - Psest_4096 0.59 -1.2
4,273,028 - Psest_4096 0.59 +0.0
4,273,028 - Psest_4096 0.59 -1.5
4,273,028 - Psest_4096 0.59 -0.0
4,273,028 - Psest_4096 0.59 +0.6
4,273,129 + Psest_4096 0.66 -0.2
4,273,129 + Psest_4096 0.66 -1.1
4,273,130 - Psest_4096 0.66 +1.9
4,273,132 + Psest_4096 0.66 -0.6
4,273,132 + Psest_4096 0.66 -0.4
4,273,132 + Psest_4096 0.66 +2.3
4,273,132 + Psest_4096 0.66 +2.4
4,273,132 + Psest_4096 0.66 +0.0
4,273,132 + Psest_4096 0.66 -0.0
4,273,132 + Psest_4096 0.66 +0.1
4,273,133 - Psest_4096 0.66 +1.9
4,273,133 - Psest_4096 0.66 +0.8
4,273,133 - Psest_4096 0.66 -1.3
4,273,133 - Psest_4096 0.66 -0.2
4,273,291 + Psest_4096 0.78 -1.6
4,273,291 + Psest_4096 0.78 +0.4
4,273,291 + Psest_4096 0.78 -0.7
4,273,291 + Psest_4096 0.78 -0.4
4,273,291 + Psest_4096 0.78 +2.5
4,273,292 - Psest_4096 0.78 -0.4
4,273,292 - Psest_4096 0.78 -1.0
4,273,292 - Psest_4096 0.78 +0.7
4,273,292 - Psest_4096 0.78 -2.0
4,273,292 - Psest_4096 0.78 +2.3
4,273,514 - +1.6
4,273,679 + -2.3
4,273,680 - +1.2
4,273,680 - -0.1
4,273,859 + +0.2
4,273,859 + +0.3
4,273,859 + +1.3
4,273,860 - +0.5
4,273,883 + -0.3
4,273,883 + +1.6
4,273,884 - +0.1
4,274,083 + Psest_4097 0.16 -0.3
4,274,084 - Psest_4097 0.16 +2.2
4,274,084 - Psest_4097 0.16 +0.5
4,274,084 - Psest_4097 0.16 +1.2
4,274,324 + Psest_4097 0.24 +2.1
4,274,324 + Psest_4097 0.24 -0.6
4,274,324 + Psest_4097 0.24 +0.2
4,274,324 + Psest_4097 0.24 -0.8
4,274,325 - Psest_4097 0.24 -2.7

Or see this region's nucleotide sequence