Experiment: Choline chloride 90 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4094 and Psest_4095 are separated by 164 nucleotides Psest_4095 and Psest_4096 are separated by 125 nucleotides
Psest_4094: Psest_4094 - Aspartokinases, at 4,270,281 to 4,271,711
_4094
Psest_4095: Psest_4095 - Uncharacterized protein conserved in bacteria, at 4,271,876 to 4,272,094
_4095
Psest_4096: Psest_4096 - Collagenase and related proteases, at 4,272,220 to 4,273,593
_4096
Position (kb)
4271
4272
4273 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4270.889 kb on + strand, within Psest_4094 at 4270.889 kb on + strand, within Psest_4094 at 4270.889 kb on + strand, within Psest_4094 at 4270.889 kb on + strand, within Psest_4094 at 4270.890 kb on - strand, within Psest_4094 at 4270.890 kb on - strand, within Psest_4094 at 4270.920 kb on + strand, within Psest_4094 at 4270.920 kb on + strand, within Psest_4094 at 4270.920 kb on + strand, within Psest_4094 at 4270.920 kb on + strand, within Psest_4094 at 4270.920 kb on + strand, within Psest_4094 at 4270.921 kb on - strand, within Psest_4094 at 4270.921 kb on - strand, within Psest_4094 at 4270.921 kb on - strand, within Psest_4094 at 4270.921 kb on - strand, within Psest_4094 at 4270.921 kb on - strand, within Psest_4094 at 4270.921 kb on - strand, within Psest_4094 at 4270.921 kb on - strand, within Psest_4094 at 4271.070 kb on + strand, within Psest_4094 at 4271.070 kb on + strand, within Psest_4094 at 4271.070 kb on + strand, within Psest_4094 at 4271.070 kb on + strand, within Psest_4094 at 4271.071 kb on - strand, within Psest_4094 at 4271.071 kb on - strand, within Psest_4094 at 4271.071 kb on - strand, within Psest_4094 at 4271.071 kb on - strand, within Psest_4094 at 4271.214 kb on + strand, within Psest_4094 at 4271.214 kb on + strand, within Psest_4094 at 4271.215 kb on - strand, within Psest_4094 at 4271.352 kb on + strand, within Psest_4094 at 4271.352 kb on + strand, within Psest_4094 at 4271.352 kb on + strand, within Psest_4094 at 4271.352 kb on + strand, within Psest_4094 at 4271.352 kb on + strand, within Psest_4094 at 4271.352 kb on + strand, within Psest_4094 at 4271.353 kb on - strand, within Psest_4094 at 4271.353 kb on - strand, within Psest_4094 at 4271.353 kb on - strand, within Psest_4094 at 4271.353 kb on - strand, within Psest_4094 at 4271.391 kb on + strand, within Psest_4094 at 4271.391 kb on + strand, within Psest_4094 at 4271.391 kb on + strand, within Psest_4094 at 4271.392 kb on - strand, within Psest_4094 at 4271.392 kb on - strand, within Psest_4094 at 4271.394 kb on + strand, within Psest_4094 at 4271.395 kb on - strand, within Psest_4094 at 4271.634 kb on + strand at 4271.634 kb on + strand at 4271.634 kb on + strand at 4271.635 kb on - strand at 4271.635 kb on - strand at 4271.635 kb on - strand at 4271.635 kb on - strand at 4271.635 kb on - strand at 4271.805 kb on - strand at 4271.860 kb on + strand at 4271.860 kb on + strand at 4271.861 kb on - strand at 4271.910 kb on + strand, within Psest_4095 at 4271.911 kb on - strand, within Psest_4095 at 4272.062 kb on + strand, within Psest_4095 at 4272.063 kb on - strand, within Psest_4095 at 4272.063 kb on - strand, within Psest_4095 at 4272.310 kb on + strand at 4272.415 kb on + strand, within Psest_4096 at 4272.415 kb on + strand, within Psest_4096 at 4272.415 kb on + strand, within Psest_4096 at 4272.415 kb on + strand, within Psest_4096 at 4272.415 kb on + strand, within Psest_4096 at 4272.415 kb on + strand, within Psest_4096 at 4272.415 kb on + strand, within Psest_4096 at 4272.415 kb on + strand, within Psest_4096 at 4272.415 kb on + strand, within Psest_4096 at 4272.415 kb on + strand, within Psest_4096 at 4272.415 kb on + strand, within Psest_4096 at 4272.415 kb on + strand, within Psest_4096 at 4272.415 kb on + strand, within Psest_4096 at 4272.415 kb on + strand, within Psest_4096 at 4272.415 kb on + strand, within Psest_4096 at 4272.415 kb on + strand, within Psest_4096 at 4272.416 kb on - strand, within Psest_4096 at 4272.416 kb on - strand, within Psest_4096 at 4272.416 kb on - strand, within Psest_4096 at 4272.416 kb on - strand, within Psest_4096 at 4272.416 kb on - strand, within Psest_4096 at 4272.416 kb on - strand, within Psest_4096 at 4272.416 kb on - strand, within Psest_4096 at 4272.416 kb on - strand, within Psest_4096 at 4272.416 kb on - strand, within Psest_4096 at 4272.416 kb on - strand, within Psest_4096 at 4272.416 kb on - strand, within Psest_4096 at 4272.416 kb on - strand, within Psest_4096 at 4272.416 kb on - strand, within Psest_4096 at 4272.416 kb on - strand, within Psest_4096 at 4272.416 kb on - strand, within Psest_4096 at 4272.416 kb on - strand, within Psest_4096 at 4272.416 kb on - strand, within Psest_4096 at 4272.419 kb on + strand, within Psest_4096 at 4272.419 kb on + strand, within Psest_4096 at 4272.419 kb on + strand, within Psest_4096 at 4272.419 kb on + strand, within Psest_4096 at 4272.419 kb on + strand, within Psest_4096 at 4272.419 kb on + strand, within Psest_4096 at 4272.419 kb on + strand, within Psest_4096 at 4272.420 kb on - strand, within Psest_4096 at 4272.420 kb on - strand, within Psest_4096 at 4272.420 kb on - strand, within Psest_4096 at 4272.420 kb on - strand, within Psest_4096 at 4272.420 kb on - strand, within Psest_4096 at 4272.745 kb on + strand, within Psest_4096 at 4272.745 kb on + strand, within Psest_4096 at 4272.745 kb on + strand, within Psest_4096 at 4272.745 kb on + strand, within Psest_4096 at 4272.746 kb on - strand, within Psest_4096 at 4272.829 kb on + strand, within Psest_4096 at 4272.829 kb on + strand, within Psest_4096 at 4272.829 kb on + strand, within Psest_4096 at 4272.829 kb on + strand, within Psest_4096 at 4272.830 kb on - strand, within Psest_4096 at 4272.830 kb on - strand, within Psest_4096 at 4272.830 kb on - strand, within Psest_4096 at 4272.830 kb on - strand, within Psest_4096 at 4272.880 kb on + strand, within Psest_4096 at 4272.880 kb on + strand, within Psest_4096 at 4272.880 kb on + strand, within Psest_4096 at 4272.881 kb on - strand, within Psest_4096 at 4273.027 kb on + strand, within Psest_4096 at 4273.027 kb on + strand, within Psest_4096 at 4273.027 kb on + strand, within Psest_4096 at 4273.027 kb on + strand, within Psest_4096 at 4273.027 kb on + strand, within Psest_4096 at 4273.027 kb on + strand, within Psest_4096 at 4273.027 kb on + strand, within Psest_4096 at 4273.027 kb on + strand, within Psest_4096 at 4273.027 kb on + strand, within Psest_4096 at 4273.027 kb on + strand, within Psest_4096 at 4273.027 kb on + strand, within Psest_4096 at 4273.027 kb on + strand, within Psest_4096 at 4273.027 kb on + strand, within Psest_4096 at 4273.028 kb on - strand, within Psest_4096 at 4273.028 kb on - strand, within Psest_4096 at 4273.028 kb on - strand, within Psest_4096 at 4273.028 kb on - strand, within Psest_4096 at 4273.028 kb on - strand, within Psest_4096 at 4273.028 kb on - strand, within Psest_4096 at 4273.028 kb on - strand, within Psest_4096 at 4273.028 kb on - strand, within Psest_4096 at 4273.028 kb on - strand, within Psest_4096 at 4273.028 kb on - strand, within Psest_4096 at 4273.028 kb on - strand, within Psest_4096 at 4273.028 kb on - strand, within Psest_4096 at 4273.028 kb on - strand, within Psest_4096 at 4273.028 kb on - strand, within Psest_4096 at 4273.028 kb on - strand, within Psest_4096 at 4273.028 kb on - strand, within Psest_4096 at 4273.028 kb on - strand, within Psest_4096 at 4273.028 kb on - strand, within Psest_4096
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 90 mM remove 4,270,889 + Psest_4094 0.42 +1.3 4,270,889 + Psest_4094 0.42 -0.1 4,270,889 + Psest_4094 0.42 +0.2 4,270,889 + Psest_4094 0.42 -0.6 4,270,890 - Psest_4094 0.43 -1.2 4,270,890 - Psest_4094 0.43 +0.6 4,270,920 + Psest_4094 0.45 +1.1 4,270,920 + Psest_4094 0.45 -1.4 4,270,920 + Psest_4094 0.45 +1.1 4,270,920 + Psest_4094 0.45 -1.2 4,270,920 + Psest_4094 0.45 -1.6 4,270,921 - Psest_4094 0.45 +1.8 4,270,921 - Psest_4094 0.45 -0.4 4,270,921 - Psest_4094 0.45 -0.4 4,270,921 - Psest_4094 0.45 +1.1 4,270,921 - Psest_4094 0.45 +0.0 4,270,921 - Psest_4094 0.45 -0.8 4,270,921 - Psest_4094 0.45 -1.0 4,271,070 + Psest_4094 0.55 +1.6 4,271,070 + Psest_4094 0.55 -2.0 4,271,070 + Psest_4094 0.55 -0.4 4,271,070 + Psest_4094 0.55 +2.5 4,271,071 - Psest_4094 0.55 -0.4 4,271,071 - Psest_4094 0.55 +3.2 4,271,071 - Psest_4094 0.55 -2.0 4,271,071 - Psest_4094 0.55 -0.2 4,271,214 + Psest_4094 0.65 +1.5 4,271,214 + Psest_4094 0.65 +1.7 4,271,215 - Psest_4094 0.65 +0.5 4,271,352 + Psest_4094 0.75 +0.7 4,271,352 + Psest_4094 0.75 +2.0 4,271,352 + Psest_4094 0.75 +0.2 4,271,352 + Psest_4094 0.75 +0.5 4,271,352 + Psest_4094 0.75 -0.8 4,271,352 + Psest_4094 0.75 -1.3 4,271,353 - Psest_4094 0.75 -0.8 4,271,353 - Psest_4094 0.75 -1.3 4,271,353 - Psest_4094 0.75 -0.9 4,271,353 - Psest_4094 0.75 -2.7 4,271,391 + Psest_4094 0.78 -2.7 4,271,391 + Psest_4094 0.78 +0.9 4,271,391 + Psest_4094 0.78 +2.4 4,271,392 - Psest_4094 0.78 +0.3 4,271,392 - Psest_4094 0.78 +0.7 4,271,394 + Psest_4094 0.78 +0.9 4,271,395 - Psest_4094 0.78 -0.3 4,271,634 + -0.5 4,271,634 + -0.9 4,271,634 + +3.7 4,271,635 - -0.3 4,271,635 - -0.6 4,271,635 - +0.2 4,271,635 - -1.7 4,271,635 - +1.4 4,271,805 - +1.7 4,271,860 + +0.1 4,271,860 + -1.5 4,271,861 - +0.2 4,271,910 + Psest_4095 0.16 -1.0 4,271,911 - Psest_4095 0.16 +0.1 4,272,062 + Psest_4095 0.85 +0.5 4,272,063 - Psest_4095 0.85 -1.0 4,272,063 - Psest_4095 0.85 -0.7 4,272,310 + -0.5 4,272,415 + Psest_4096 0.14 +0.8 4,272,415 + Psest_4096 0.14 -0.5 4,272,415 + Psest_4096 0.14 +0.8 4,272,415 + Psest_4096 0.14 -2.0 4,272,415 + Psest_4096 0.14 +0.2 4,272,415 + Psest_4096 0.14 -0.3 4,272,415 + Psest_4096 0.14 +1.2 4,272,415 + Psest_4096 0.14 -0.2 4,272,415 + Psest_4096 0.14 +1.7 4,272,415 + Psest_4096 0.14 +0.0 4,272,415 + Psest_4096 0.14 +1.5 4,272,415 + Psest_4096 0.14 +0.6 4,272,415 + Psest_4096 0.14 -0.6 4,272,415 + Psest_4096 0.14 -1.2 4,272,415 + Psest_4096 0.14 +1.0 4,272,415 + Psest_4096 0.14 -0.7 4,272,416 - Psest_4096 0.14 -2.0 4,272,416 - Psest_4096 0.14 +2.0 4,272,416 - Psest_4096 0.14 -0.4 4,272,416 - Psest_4096 0.14 -2.6 4,272,416 - Psest_4096 0.14 -1.6 4,272,416 - Psest_4096 0.14 -0.7 4,272,416 - Psest_4096 0.14 -1.4 4,272,416 - Psest_4096 0.14 -1.2 4,272,416 - Psest_4096 0.14 -3.0 4,272,416 - Psest_4096 0.14 +1.6 4,272,416 - Psest_4096 0.14 +0.9 4,272,416 - Psest_4096 0.14 +2.7 4,272,416 - Psest_4096 0.14 +0.2 4,272,416 - Psest_4096 0.14 -0.2 4,272,416 - Psest_4096 0.14 +1.1 4,272,416 - Psest_4096 0.14 +0.1 4,272,416 - Psest_4096 0.14 +2.6 4,272,419 + Psest_4096 0.14 +1.0 4,272,419 + Psest_4096 0.14 -0.9 4,272,419 + Psest_4096 0.14 +1.5 4,272,419 + Psest_4096 0.14 -0.8 4,272,419 + Psest_4096 0.14 +0.7 4,272,419 + Psest_4096 0.14 +2.1 4,272,419 + Psest_4096 0.14 +0.7 4,272,420 - Psest_4096 0.15 +0.4 4,272,420 - Psest_4096 0.15 -0.3 4,272,420 - Psest_4096 0.15 +0.9 4,272,420 - Psest_4096 0.15 +1.8 4,272,420 - Psest_4096 0.15 +0.5 4,272,745 + Psest_4096 0.38 +0.4 4,272,745 + Psest_4096 0.38 -0.3 4,272,745 + Psest_4096 0.38 -2.9 4,272,745 + Psest_4096 0.38 +0.6 4,272,746 - Psest_4096 0.38 +1.5 4,272,829 + Psest_4096 0.44 -1.4 4,272,829 + Psest_4096 0.44 +2.4 4,272,829 + Psest_4096 0.44 -1.5 4,272,829 + Psest_4096 0.44 -0.7 4,272,830 - Psest_4096 0.44 +0.7 4,272,830 - Psest_4096 0.44 +0.3 4,272,830 - Psest_4096 0.44 +0.4 4,272,830 - Psest_4096 0.44 -0.3 4,272,880 + Psest_4096 0.48 +1.7 4,272,880 + Psest_4096 0.48 -0.6 4,272,880 + Psest_4096 0.48 +1.5 4,272,881 - Psest_4096 0.48 -0.1 4,273,027 + Psest_4096 0.59 +1.2 4,273,027 + Psest_4096 0.59 -0.6 4,273,027 + Psest_4096 0.59 +2.1 4,273,027 + Psest_4096 0.59 -2.4 4,273,027 + Psest_4096 0.59 +1.1 4,273,027 + Psest_4096 0.59 +1.9 4,273,027 + Psest_4096 0.59 +0.3 4,273,027 + Psest_4096 0.59 +0.6 4,273,027 + Psest_4096 0.59 -0.0 4,273,027 + Psest_4096 0.59 -0.5 4,273,027 + Psest_4096 0.59 -0.0 4,273,027 + Psest_4096 0.59 -1.7 4,273,027 + Psest_4096 0.59 +1.0 4,273,028 - Psest_4096 0.59 +2.2 4,273,028 - Psest_4096 0.59 +1.3 4,273,028 - Psest_4096 0.59 +1.5 4,273,028 - Psest_4096 0.59 +0.8 4,273,028 - Psest_4096 0.59 -0.8 4,273,028 - Psest_4096 0.59 -1.0 4,273,028 - Psest_4096 0.59 +2.9 4,273,028 - Psest_4096 0.59 -0.6 4,273,028 - Psest_4096 0.59 -0.5 4,273,028 - Psest_4096 0.59 +0.3 4,273,028 - Psest_4096 0.59 -0.9 4,273,028 - Psest_4096 0.59 -0.0 4,273,028 - Psest_4096 0.59 -1.7 4,273,028 - Psest_4096 0.59 -1.2 4,273,028 - Psest_4096 0.59 +0.0 4,273,028 - Psest_4096 0.59 -1.5 4,273,028 - Psest_4096 0.59 -0.0 4,273,028 - Psest_4096 0.59 +0.6
Or see this region's nucleotide sequence