Experiment: Choline chloride 90 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0377 and Psest_0378 are separated by 93 nucleotides Psest_0378 and Psest_0379 are separated by 126 nucleotides
Psest_0377: Psest_0377 - galactarate dehydratase, at 405,056 to 406,621
_0377
Psest_0378: Psest_0378 - Lactate dehydrogenase and related dehydrogenases, at 406,715 to 407,644
_0378
Psest_0379: Psest_0379 - Galactose mutarotase and related enzymes, at 407,771 to 408,661
_0379
Position (kb) 406
407
408 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 405.962 kb on + strand, within Psest_0377 at 406.037 kb on + strand, within Psest_0377 at 406.037 kb on + strand, within Psest_0377 at 406.037 kb on + strand, within Psest_0377 at 406.037 kb on + strand, within Psest_0377 at 406.037 kb on + strand, within Psest_0377 at 406.037 kb on + strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.183 kb on + strand, within Psest_0377 at 406.523 kb on + strand at 406.523 kb on + strand at 406.523 kb on + strand at 406.523 kb on + strand at 406.524 kb on - strand at 406.524 kb on - strand at 406.524 kb on - strand at 406.526 kb on + strand at 406.527 kb on - strand at 406.527 kb on - strand at 406.527 kb on - strand at 406.688 kb on + strand at 406.688 kb on + strand at 406.722 kb on - strand at 406.722 kb on - strand at 407.154 kb on + strand, within Psest_0378 at 407.154 kb on + strand, within Psest_0378 at 407.155 kb on - strand, within Psest_0378 at 407.155 kb on - strand, within Psest_0378 at 407.219 kb on + strand, within Psest_0378 at 407.220 kb on - strand, within Psest_0378 at 407.522 kb on - strand, within Psest_0378 at 407.677 kb on + strand at 407.908 kb on - strand, within Psest_0379 at 408.199 kb on - strand, within Psest_0379 at 408.254 kb on + strand, within Psest_0379 at 408.254 kb on + strand, within Psest_0379 at 408.254 kb on + strand, within Psest_0379 at 408.254 kb on + strand, within Psest_0379 at 408.254 kb on + strand, within Psest_0379 at 408.255 kb on - strand, within Psest_0379 at 408.255 kb on - strand, within Psest_0379 at 408.376 kb on - strand, within Psest_0379 at 408.506 kb on + strand, within Psest_0379 at 408.507 kb on - strand, within Psest_0379 at 408.507 kb on - strand, within Psest_0379
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 90 mM remove 405,962 + Psest_0377 0.58 -1.8 406,037 + Psest_0377 0.63 -0.7 406,037 + Psest_0377 0.63 -3.0 406,037 + Psest_0377 0.63 -0.1 406,037 + Psest_0377 0.63 +0.3 406,037 + Psest_0377 0.63 +0.9 406,037 + Psest_0377 0.63 +1.7 406,038 - Psest_0377 0.63 -1.8 406,038 - Psest_0377 0.63 +0.3 406,038 - Psest_0377 0.63 +2.4 406,038 - Psest_0377 0.63 -1.0 406,038 - Psest_0377 0.63 +1.7 406,038 - Psest_0377 0.63 +0.4 406,038 - Psest_0377 0.63 +3.1 406,038 - Psest_0377 0.63 +0.7 406,038 - Psest_0377 0.63 +1.2 406,038 - Psest_0377 0.63 +1.8 406,038 - Psest_0377 0.63 -0.2 406,183 + Psest_0377 0.72 +0.7 406,523 + +0.4 406,523 + -1.7 406,523 + +1.4 406,523 + +1.6 406,524 - -0.3 406,524 - -0.8 406,524 - +0.4 406,526 + +0.1 406,527 - +0.7 406,527 - +1.7 406,527 - -0.0 406,688 + -1.7 406,688 + +0.6 406,722 - -0.2 406,722 - -0.3 407,154 + Psest_0378 0.47 -0.8 407,154 + Psest_0378 0.47 +0.4 407,155 - Psest_0378 0.47 +0.1 407,155 - Psest_0378 0.47 +1.6 407,219 + Psest_0378 0.54 -1.2 407,220 - Psest_0378 0.54 -0.1 407,522 - Psest_0378 0.87 -0.3 407,677 + -0.5 407,908 - Psest_0379 0.15 +3.0 408,199 - Psest_0379 0.48 -1.5 408,254 + Psest_0379 0.54 +0.7 408,254 + Psest_0379 0.54 +0.7 408,254 + Psest_0379 0.54 +0.8 408,254 + Psest_0379 0.54 -1.3 408,254 + Psest_0379 0.54 +0.3 408,255 - Psest_0379 0.54 +0.6 408,255 - Psest_0379 0.54 +2.6 408,376 - Psest_0379 0.68 +1.4 408,506 + Psest_0379 0.82 -0.7 408,507 - Psest_0379 0.83 -0.8 408,507 - Psest_0379 0.83 +3.4
Or see this region's nucleotide sequence