Experiment: Choline chloride 90 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0375 and Psest_0376 are separated by 92 nucleotides Psest_0376 and Psest_0377 are separated by 108 nucleotides
Psest_0375: Psest_0375 - NAD-dependent aldehyde dehydrogenases, at 402,072 to 403,514
_0375
Psest_0376: Psest_0376 - glucarate dehydratase, at 403,607 to 404,947
_0376
Psest_0377: Psest_0377 - galactarate dehydratase, at 405,056 to 406,621
_0377
Position (kb) 403
404
405 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 402.960 kb on + strand, within Psest_0375 at 402.960 kb on + strand, within Psest_0375 at 402.960 kb on + strand, within Psest_0375 at 402.960 kb on + strand, within Psest_0375 at 402.960 kb on + strand, within Psest_0375 at 402.960 kb on + strand, within Psest_0375 at 402.960 kb on + strand, within Psest_0375 at 402.961 kb on - strand, within Psest_0375 at 402.961 kb on - strand, within Psest_0375 at 403.083 kb on + strand, within Psest_0375 at 403.083 kb on + strand, within Psest_0375 at 403.083 kb on + strand, within Psest_0375 at 403.158 kb on + strand, within Psest_0375 at 403.158 kb on + strand, within Psest_0375 at 403.260 kb on + strand, within Psest_0375 at 403.260 kb on + strand, within Psest_0375 at 403.336 kb on - strand, within Psest_0375 at 403.482 kb on + strand at 403.483 kb on - strand at 403.483 kb on - strand at 403.483 kb on - strand at 403.483 kb on - strand at 403.483 kb on - strand at 403.483 kb on - strand at 403.503 kb on + strand at 403.503 kb on + strand at 403.503 kb on + strand at 403.503 kb on + strand at 403.503 kb on + strand at 403.503 kb on + strand at 403.504 kb on - strand at 403.504 kb on - strand at 403.504 kb on - strand at 403.504 kb on - strand at 403.504 kb on - strand at 403.504 kb on - strand at 403.504 kb on - strand at 403.504 kb on - strand at 403.847 kb on + strand, within Psest_0376 at 403.847 kb on + strand, within Psest_0376 at 403.847 kb on + strand, within Psest_0376 at 403.848 kb on - strand, within Psest_0376 at 403.848 kb on - strand, within Psest_0376 at 404.195 kb on + strand, within Psest_0376 at 404.195 kb on + strand, within Psest_0376 at 404.894 kb on + strand at 404.895 kb on - strand at 404.895 kb on - strand at 404.895 kb on - strand at 405.412 kb on + strand, within Psest_0377 at 405.412 kb on + strand, within Psest_0377 at 405.413 kb on - strand, within Psest_0377 at 405.413 kb on - strand, within Psest_0377 at 405.413 kb on - strand, within Psest_0377 at 405.413 kb on - strand, within Psest_0377 at 405.413 kb on - strand, within Psest_0377 at 405.413 kb on - strand, within Psest_0377 at 405.413 kb on - strand, within Psest_0377 at 405.623 kb on + strand, within Psest_0377 at 405.623 kb on + strand, within Psest_0377 at 405.623 kb on + strand, within Psest_0377 at 405.624 kb on - strand, within Psest_0377 at 405.624 kb on - strand, within Psest_0377 at 405.624 kb on - strand, within Psest_0377 at 405.624 kb on - strand, within Psest_0377 at 405.624 kb on - strand, within Psest_0377 at 405.624 kb on - strand, within Psest_0377 at 405.624 kb on - strand, within Psest_0377
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 90 mM remove 402,960 + Psest_0375 0.62 +0.3 402,960 + Psest_0375 0.62 +0.5 402,960 + Psest_0375 0.62 -0.6 402,960 + Psest_0375 0.62 +0.3 402,960 + Psest_0375 0.62 +0.2 402,960 + Psest_0375 0.62 -1.2 402,960 + Psest_0375 0.62 +0.3 402,961 - Psest_0375 0.62 -0.5 402,961 - Psest_0375 0.62 -1.5 403,083 + Psest_0375 0.70 -1.0 403,083 + Psest_0375 0.70 -0.1 403,083 + Psest_0375 0.70 +0.3 403,158 + Psest_0375 0.75 -1.7 403,158 + Psest_0375 0.75 +2.1 403,260 + Psest_0375 0.82 -2.1 403,260 + Psest_0375 0.82 -1.2 403,336 - Psest_0375 0.88 +0.7 403,482 + -0.0 403,483 - +1.0 403,483 - -3.3 403,483 - -0.8 403,483 - +2.0 403,483 - -0.8 403,483 - +2.5 403,503 + +1.0 403,503 + +0.2 403,503 + +0.7 403,503 + +0.1 403,503 + -2.6 403,503 + -0.9 403,504 - +1.9 403,504 - -0.1 403,504 - -1.9 403,504 - +0.8 403,504 - -2.5 403,504 - -2.4 403,504 - -0.2 403,504 - +1.4 403,847 + Psest_0376 0.18 -0.8 403,847 + Psest_0376 0.18 -0.6 403,847 + Psest_0376 0.18 -1.4 403,848 - Psest_0376 0.18 -1.6 403,848 - Psest_0376 0.18 +0.2 404,195 + Psest_0376 0.44 -1.5 404,195 + Psest_0376 0.44 -2.5 404,894 + +2.0 404,895 - +0.5 404,895 - -1.1 404,895 - +1.2 405,412 + Psest_0377 0.23 +1.0 405,412 + Psest_0377 0.23 +0.1 405,413 - Psest_0377 0.23 -0.7 405,413 - Psest_0377 0.23 +0.9 405,413 - Psest_0377 0.23 +1.2 405,413 - Psest_0377 0.23 -2.4 405,413 - Psest_0377 0.23 +1.9 405,413 - Psest_0377 0.23 +0.1 405,413 - Psest_0377 0.23 -0.0 405,623 + Psest_0377 0.36 +1.5 405,623 + Psest_0377 0.36 +0.7 405,623 + Psest_0377 0.36 +1.5 405,624 - Psest_0377 0.36 -0.4 405,624 - Psest_0377 0.36 -0.2 405,624 - Psest_0377 0.36 +0.8 405,624 - Psest_0377 0.36 -0.2 405,624 - Psest_0377 0.36 -0.9 405,624 - Psest_0377 0.36 +0.1 405,624 - Psest_0377 0.36 -1.5
Or see this region's nucleotide sequence