Experiment: Choline chloride 90 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3498 and Psest_3499 overlap by 4 nucleotides Psest_3499 and Psest_3500 are separated by 74 nucleotides Psest_3500 and Psest_3501 are separated by 71 nucleotides
Psest_3498: Psest_3498 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E, at 3,670,673 to 3,671,275
_3498
Psest_3499: Psest_3499 - acyl-CoA thioesterase II, at 3,671,272 to 3,672,141
_3499
Psest_3500: Psest_3500 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 3,672,216 to 3,672,770
_3500
Psest_3501: Psest_3501 - Deacetylases, including yeast histone deacetylase and acetoin utilization protein, at 3,672,842 to 3,673,762
_3501
Position (kb)
3672
3673 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3671.402 kb on + strand, within Psest_3499 at 3671.402 kb on + strand, within Psest_3499 at 3671.402 kb on + strand, within Psest_3499 at 3671.402 kb on + strand, within Psest_3499 at 3671.540 kb on + strand, within Psest_3499 at 3671.552 kb on + strand, within Psest_3499 at 3671.552 kb on + strand, within Psest_3499 at 3671.552 kb on + strand, within Psest_3499 at 3671.552 kb on + strand, within Psest_3499 at 3671.552 kb on + strand, within Psest_3499 at 3671.553 kb on - strand, within Psest_3499 at 3671.553 kb on - strand, within Psest_3499 at 3671.553 kb on - strand, within Psest_3499 at 3671.553 kb on - strand, within Psest_3499 at 3671.916 kb on - strand, within Psest_3499 at 3671.955 kb on - strand, within Psest_3499 at 3672.131 kb on - strand at 3672.131 kb on - strand at 3672.131 kb on - strand at 3672.217 kb on + strand at 3672.218 kb on - strand at 3672.218 kb on - strand at 3672.420 kb on + strand, within Psest_3500 at 3672.420 kb on + strand, within Psest_3500 at 3672.420 kb on + strand, within Psest_3500 at 3672.420 kb on + strand, within Psest_3500 at 3672.421 kb on - strand, within Psest_3500 at 3672.421 kb on - strand, within Psest_3500 at 3672.421 kb on - strand, within Psest_3500 at 3672.421 kb on - strand, within Psest_3500 at 3672.661 kb on + strand, within Psest_3500 at 3672.808 kb on - strand at 3672.808 kb on - strand at 3672.808 kb on - strand at 3672.808 kb on - strand at 3672.872 kb on + strand at 3672.872 kb on + strand at 3672.873 kb on - strand at 3672.873 kb on - strand at 3672.873 kb on - strand at 3672.973 kb on - strand, within Psest_3501 at 3672.988 kb on - strand, within Psest_3501 at 3673.029 kb on - strand, within Psest_3501 at 3673.029 kb on - strand, within Psest_3501 at 3673.029 kb on - strand, within Psest_3501 at 3673.029 kb on - strand, within Psest_3501 at 3673.040 kb on + strand, within Psest_3501 at 3673.041 kb on - strand, within Psest_3501 at 3673.114 kb on + strand, within Psest_3501 at 3673.115 kb on - strand, within Psest_3501 at 3673.265 kb on + strand, within Psest_3501 at 3673.265 kb on + strand, within Psest_3501 at 3673.265 kb on + strand, within Psest_3501 at 3673.266 kb on - strand, within Psest_3501 at 3673.266 kb on - strand, within Psest_3501 at 3673.266 kb on - strand, within Psest_3501 at 3673.266 kb on - strand, within Psest_3501 at 3673.429 kb on + strand, within Psest_3501 at 3673.429 kb on + strand, within Psest_3501 at 3673.464 kb on - strand, within Psest_3501 at 3673.464 kb on - strand, within Psest_3501 at 3673.493 kb on + strand, within Psest_3501 at 3673.493 kb on + strand, within Psest_3501 at 3673.494 kb on - strand, within Psest_3501 at 3673.494 kb on - strand, within Psest_3501 at 3673.494 kb on - strand, within Psest_3501 at 3673.494 kb on - strand, within Psest_3501 at 3673.508 kb on + strand, within Psest_3501 at 3673.508 kb on + strand, within Psest_3501
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 90 mM remove 3,671,402 + Psest_3499 0.15 +1.5 3,671,402 + Psest_3499 0.15 +1.7 3,671,402 + Psest_3499 0.15 +0.5 3,671,402 + Psest_3499 0.15 +1.4 3,671,540 + Psest_3499 0.31 +1.8 3,671,552 + Psest_3499 0.32 -2.1 3,671,552 + Psest_3499 0.32 -1.9 3,671,552 + Psest_3499 0.32 +1.2 3,671,552 + Psest_3499 0.32 -1.5 3,671,552 + Psest_3499 0.32 +0.7 3,671,553 - Psest_3499 0.32 -1.4 3,671,553 - Psest_3499 0.32 -2.9 3,671,553 - Psest_3499 0.32 -2.0 3,671,553 - Psest_3499 0.32 +1.8 3,671,916 - Psest_3499 0.74 -0.4 3,671,955 - Psest_3499 0.79 -0.2 3,672,131 - +0.7 3,672,131 - -0.4 3,672,131 - +0.3 3,672,217 + -0.8 3,672,218 - -0.3 3,672,218 - +0.0 3,672,420 + Psest_3500 0.37 +1.3 3,672,420 + Psest_3500 0.37 +0.1 3,672,420 + Psest_3500 0.37 +1.3 3,672,420 + Psest_3500 0.37 -0.1 3,672,421 - Psest_3500 0.37 -1.5 3,672,421 - Psest_3500 0.37 +0.4 3,672,421 - Psest_3500 0.37 -0.2 3,672,421 - Psest_3500 0.37 +0.2 3,672,661 + Psest_3500 0.80 +0.3 3,672,808 - +0.7 3,672,808 - -0.6 3,672,808 - +0.7 3,672,808 - +3.5 3,672,872 + -1.4 3,672,872 + +0.8 3,672,873 - +1.6 3,672,873 - +0.6 3,672,873 - -0.0 3,672,973 - Psest_3501 0.14 -0.1 3,672,988 - Psest_3501 0.16 -0.1 3,673,029 - Psest_3501 0.20 +0.1 3,673,029 - Psest_3501 0.20 -0.6 3,673,029 - Psest_3501 0.20 +0.2 3,673,029 - Psest_3501 0.20 +2.7 3,673,040 + Psest_3501 0.21 -0.8 3,673,041 - Psest_3501 0.22 +0.6 3,673,114 + Psest_3501 0.30 -1.5 3,673,115 - Psest_3501 0.30 +0.6 3,673,265 + Psest_3501 0.46 +2.2 3,673,265 + Psest_3501 0.46 -1.7 3,673,265 + Psest_3501 0.46 -0.6 3,673,266 - Psest_3501 0.46 +0.4 3,673,266 - Psest_3501 0.46 -2.2 3,673,266 - Psest_3501 0.46 -0.0 3,673,266 - Psest_3501 0.46 +0.4 3,673,429 + Psest_3501 0.64 -0.9 3,673,429 + Psest_3501 0.64 +0.5 3,673,464 - Psest_3501 0.68 +0.4 3,673,464 - Psest_3501 0.68 +1.4 3,673,493 + Psest_3501 0.71 +1.8 3,673,493 + Psest_3501 0.71 +0.5 3,673,494 - Psest_3501 0.71 -0.4 3,673,494 - Psest_3501 0.71 +2.6 3,673,494 - Psest_3501 0.71 +0.0 3,673,494 - Psest_3501 0.71 -1.1 3,673,508 + Psest_3501 0.72 -2.3 3,673,508 + Psest_3501 0.72 +0.4
Or see this region's nucleotide sequence