Experiment: Choline chloride 90 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0310 and Psest_0311 overlap by 4 nucleotides Psest_0311 and Psest_0312 are separated by 93 nucleotides
Psest_0310: Psest_0310 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 329,497 to 332,634
_0310
Psest_0311: Psest_0311 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 332,631 to 334,055
_0311
Psest_0312: Psest_0312 - Superfamily II DNA and RNA helicases, at 334,149 to 335,966
_0312
Position (kb) 332
333
334
335 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 331.858 kb on + strand, within Psest_0310 at 332.164 kb on + strand, within Psest_0310 at 332.564 kb on - strand at 332.577 kb on + strand at 332.577 kb on + strand at 332.577 kb on + strand at 332.577 kb on + strand at 332.748 kb on + strand at 333.015 kb on + strand, within Psest_0311 at 333.016 kb on - strand, within Psest_0311 at 333.097 kb on - strand, within Psest_0311 at 333.222 kb on + strand, within Psest_0311 at 333.223 kb on - strand, within Psest_0311 at 333.337 kb on - strand, within Psest_0311 at 333.472 kb on + strand, within Psest_0311 at 333.473 kb on - strand, within Psest_0311 at 333.473 kb on - strand, within Psest_0311 at 333.804 kb on + strand, within Psest_0311 at 333.805 kb on - strand, within Psest_0311 at 333.805 kb on - strand, within Psest_0311 at 333.856 kb on - strand, within Psest_0311 at 333.858 kb on + strand, within Psest_0311 at 333.858 kb on + strand, within Psest_0311 at 333.858 kb on + strand, within Psest_0311 at 333.858 kb on + strand, within Psest_0311 at 333.859 kb on - strand, within Psest_0311 at 333.859 kb on - strand, within Psest_0311 at 333.859 kb on - strand, within Psest_0311 at 333.859 kb on - strand, within Psest_0311 at 333.859 kb on - strand, within Psest_0311 at 333.859 kb on - strand, within Psest_0311 at 333.859 kb on - strand, within Psest_0311 at 333.896 kb on + strand, within Psest_0311 at 333.901 kb on - strand, within Psest_0311 at 333.901 kb on - strand, within Psest_0311 at 334.206 kb on + strand at 334.206 kb on + strand at 334.540 kb on + strand at 334.540 kb on + strand, within Psest_0312 at 334.969 kb on + strand, within Psest_0312 at 334.969 kb on + strand, within Psest_0312 at 334.969 kb on + strand, within Psest_0312 at 334.969 kb on + strand, within Psest_0312 at 334.969 kb on + strand, within Psest_0312 at 334.969 kb on + strand, within Psest_0312 at 334.969 kb on + strand, within Psest_0312 at 334.969 kb on + strand, within Psest_0312 at 334.969 kb on + strand, within Psest_0312 at 334.969 kb on + strand, within Psest_0312 at 334.969 kb on + strand, within Psest_0312 at 334.969 kb on + strand, within Psest_0312 at 334.970 kb on - strand, within Psest_0312 at 334.970 kb on - strand, within Psest_0312 at 334.970 kb on - strand, within Psest_0312 at 334.970 kb on - strand, within Psest_0312 at 334.970 kb on - strand, within Psest_0312
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 90 mM remove 331,858 + Psest_0310 0.75 -1.4 332,164 + Psest_0310 0.85 +0.9 332,564 - -0.9 332,577 + -0.4 332,577 + -1.1 332,577 + +0.9 332,577 + +0.2 332,748 + -1.8 333,015 + Psest_0311 0.27 -1.1 333,016 - Psest_0311 0.27 -1.6 333,097 - Psest_0311 0.33 -0.5 333,222 + Psest_0311 0.41 +2.8 333,223 - Psest_0311 0.42 -0.5 333,337 - Psest_0311 0.50 -0.1 333,472 + Psest_0311 0.59 -1.9 333,473 - Psest_0311 0.59 -1.4 333,473 - Psest_0311 0.59 -0.1 333,804 + Psest_0311 0.82 -1.6 333,805 - Psest_0311 0.82 +1.2 333,805 - Psest_0311 0.82 -0.9 333,856 - Psest_0311 0.86 -0.9 333,858 + Psest_0311 0.86 -1.6 333,858 + Psest_0311 0.86 -3.7 333,858 + Psest_0311 0.86 -2.1 333,858 + Psest_0311 0.86 -2.2 333,859 - Psest_0311 0.86 -1.5 333,859 - Psest_0311 0.86 -1.3 333,859 - Psest_0311 0.86 -1.1 333,859 - Psest_0311 0.86 -2.0 333,859 - Psest_0311 0.86 -1.8 333,859 - Psest_0311 0.86 +1.0 333,859 - Psest_0311 0.86 -0.7 333,896 + Psest_0311 0.89 -1.4 333,901 - Psest_0311 0.89 -0.4 333,901 - Psest_0311 0.89 -1.3 334,206 + -0.8 334,206 + -0.2 334,540 + +0.4 334,540 + Psest_0312 0.22 -3.2 334,969 + Psest_0312 0.45 +2.2 334,969 + Psest_0312 0.45 -1.3 334,969 + Psest_0312 0.45 +0.4 334,969 + Psest_0312 0.45 -0.1 334,969 + Psest_0312 0.45 +1.0 334,969 + Psest_0312 0.45 +0.0 334,969 + Psest_0312 0.45 +0.7 334,969 + Psest_0312 0.45 +1.4 334,969 + Psest_0312 0.45 -0.3 334,969 + Psest_0312 0.45 +0.4 334,969 + Psest_0312 0.45 +1.3 334,969 + Psest_0312 0.45 +1.4 334,970 - Psest_0312 0.45 +2.3 334,970 - Psest_0312 0.45 +0.5 334,970 - Psest_0312 0.45 +1.4 334,970 - Psest_0312 0.45 +0.7 334,970 - Psest_0312 0.45 -0.0
Or see this region's nucleotide sequence