Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0239

Experiment: Choline chloride 90 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0238 and Psest_0239 are separated by 56 nucleotidesPsest_0239 and Psest_0240 are separated by 115 nucleotidesPsest_0240 and Psest_0241 are separated by 100 nucleotides Psest_0238: Psest_0238 - Predicted signal transduction protein, at 248,765 to 249,631 _0238 Psest_0239: Psest_0239 - formamidopyrimidine-DNA glycosylase (fpg), at 249,688 to 250,500 _0239 Psest_0240: Psest_0240 - hypothetical protein, at 250,616 to 250,957 _0240 Psest_0241: Psest_0241 - Na+/phosphate symporter, at 251,058 to 252,896 _0241 Position (kb) 249 250 251Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 249.176 kb on + strand, within Psest_0238at 249.176 kb on + strand, within Psest_0238at 249.176 kb on + strand, within Psest_0238at 249.176 kb on + strand, within Psest_0238at 249.176 kb on + strand, within Psest_0238at 249.176 kb on + strand, within Psest_0238at 249.176 kb on + strand, within Psest_0238at 249.176 kb on + strand, within Psest_0238at 249.177 kb on - strand, within Psest_0238at 249.177 kb on - strand, within Psest_0238at 249.177 kb on - strand, within Psest_0238at 249.177 kb on - strand, within Psest_0238at 249.177 kb on - strand, within Psest_0238at 249.177 kb on - strand, within Psest_0238at 249.177 kb on - strand, within Psest_0238at 249.177 kb on - strand, within Psest_0238at 249.177 kb on - strand, within Psest_0238at 249.177 kb on - strand, within Psest_0238at 249.196 kb on + strand, within Psest_0238at 249.197 kb on - strand, within Psest_0238at 249.260 kb on + strand, within Psest_0238at 249.261 kb on - strand, within Psest_0238at 249.261 kb on - strand, within Psest_0238at 249.338 kb on + strand, within Psest_0238at 249.338 kb on + strand, within Psest_0238at 249.339 kb on - strand, within Psest_0238at 249.339 kb on - strand, within Psest_0238at 249.339 kb on - strand, within Psest_0238at 249.563 kb on + strandat 249.563 kb on + strandat 249.563 kb on + strandat 249.564 kb on - strandat 249.564 kb on - strandat 249.581 kb on + strandat 249.581 kb on + strandat 249.674 kb on - strandat 249.862 kb on + strand, within Psest_0239at 249.909 kb on + strand, within Psest_0239at 250.004 kb on - strand, within Psest_0239at 250.197 kb on + strand, within Psest_0239at 250.197 kb on + strand, within Psest_0239at 250.198 kb on - strand, within Psest_0239at 250.198 kb on - strand, within Psest_0239at 250.198 kb on - strand, within Psest_0239at 250.198 kb on - strand, within Psest_0239at 250.198 kb on - strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.202 kb on - strand, within Psest_0239at 250.202 kb on - strand, within Psest_0239at 250.202 kb on - strand, within Psest_0239at 250.202 kb on - strand, within Psest_0239at 250.202 kb on - strand, within Psest_0239at 250.202 kb on - strand, within Psest_0239at 250.202 kb on - strand, within Psest_0239at 250.477 kb on + strandat 250.560 kb on + strandat 250.560 kb on + strandat 250.560 kb on + strandat 250.560 kb on + strandat 250.560 kb on + strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.562 kb on + strandat 250.563 kb on - strandat 250.563 kb on - strandat 250.563 kb on - strandat 250.724 kb on + strand, within Psest_0240at 250.724 kb on + strand, within Psest_0240at 250.724 kb on + strand, within Psest_0240at 250.724 kb on + strand, within Psest_0240at 250.724 kb on + strand, within Psest_0240at 250.724 kb on + strand, within Psest_0240at 250.724 kb on + strand, within Psest_0240at 250.724 kb on + strand, within Psest_0240at 250.725 kb on - strand, within Psest_0240at 250.725 kb on - strand, within Psest_0240at 250.725 kb on - strand, within Psest_0240at 250.748 kb on + strand, within Psest_0240at 251.019 kb on + strandat 251.203 kb on + strandat 251.203 kb on + strandat 251.204 kb on - strandat 251.204 kb on - strandat 251.326 kb on + strand, within Psest_0241at 251.342 kb on + strand, within Psest_0241at 251.343 kb on - strand, within Psest_0241at 251.343 kb on - strand, within Psest_0241at 251.343 kb on - strand, within Psest_0241at 251.365 kb on + strand, within Psest_0241at 251.408 kb on + strand, within Psest_0241at 251.483 kb on - strand, within Psest_0241

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 90 mM
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249,176 + Psest_0238 0.47 +1.6
249,176 + Psest_0238 0.47 -0.1
249,176 + Psest_0238 0.47 -0.9
249,176 + Psest_0238 0.47 +0.7
249,176 + Psest_0238 0.47 -1.8
249,176 + Psest_0238 0.47 +0.8
249,176 + Psest_0238 0.47 +0.1
249,176 + Psest_0238 0.47 +1.1
249,177 - Psest_0238 0.48 -1.0
249,177 - Psest_0238 0.48 -0.5
249,177 - Psest_0238 0.48 -0.1
249,177 - Psest_0238 0.48 -0.9
249,177 - Psest_0238 0.48 +2.0
249,177 - Psest_0238 0.48 -0.3
249,177 - Psest_0238 0.48 -1.4
249,177 - Psest_0238 0.48 +3.7
249,177 - Psest_0238 0.48 +1.5
249,177 - Psest_0238 0.48 +0.3
249,196 + Psest_0238 0.50 +0.3
249,197 - Psest_0238 0.50 +0.9
249,260 + Psest_0238 0.57 -1.3
249,261 - Psest_0238 0.57 +0.4
249,261 - Psest_0238 0.57 -0.2
249,338 + Psest_0238 0.66 -0.4
249,338 + Psest_0238 0.66 -0.7
249,339 - Psest_0238 0.66 -1.7
249,339 - Psest_0238 0.66 +0.2
249,339 - Psest_0238 0.66 +0.4
249,563 + -0.9
249,563 + -0.3
249,563 + +0.8
249,564 - -0.5
249,564 - -0.1
249,581 + +0.0
249,581 + -1.1
249,674 - +0.5
249,862 + Psest_0239 0.21 -2.0
249,909 + Psest_0239 0.27 +0.5
250,004 - Psest_0239 0.39 -0.4
250,197 + Psest_0239 0.63 -0.9
250,197 + Psest_0239 0.63 -1.6
250,198 - Psest_0239 0.63 +1.9
250,198 - Psest_0239 0.63 -0.6
250,198 - Psest_0239 0.63 +0.9
250,198 - Psest_0239 0.63 -3.0
250,198 - Psest_0239 0.63 +0.6
250,201 + Psest_0239 0.63 -0.4
250,201 + Psest_0239 0.63 -0.1
250,201 + Psest_0239 0.63 -0.2
250,201 + Psest_0239 0.63 -1.3
250,201 + Psest_0239 0.63 -0.5
250,201 + Psest_0239 0.63 -0.6
250,201 + Psest_0239 0.63 +0.5
250,201 + Psest_0239 0.63 +0.8
250,201 + Psest_0239 0.63 -1.7
250,201 + Psest_0239 0.63 -0.3
250,202 - Psest_0239 0.63 +0.2
250,202 - Psest_0239 0.63 -1.7
250,202 - Psest_0239 0.63 +1.3
250,202 - Psest_0239 0.63 -0.0
250,202 - Psest_0239 0.63 -0.7
250,202 - Psest_0239 0.63 -1.0
250,202 - Psest_0239 0.63 -0.9
250,477 + -0.2
250,560 + -0.3
250,560 + +0.5
250,560 + -0.6
250,560 + -2.4
250,560 + +1.5
250,561 - -1.7
250,561 - +0.7
250,561 - -1.7
250,561 - +0.0
250,561 - +1.0
250,561 - -0.7
250,561 - +1.3
250,561 - -0.7
250,561 - +2.2
250,561 - -1.6
250,561 - +2.4
250,561 - +2.6
250,562 + +0.4
250,563 - +0.1
250,563 - +0.7
250,563 - -0.6
250,724 + Psest_0240 0.32 +1.8
250,724 + Psest_0240 0.32 -2.7
250,724 + Psest_0240 0.32 +2.2
250,724 + Psest_0240 0.32 -0.8
250,724 + Psest_0240 0.32 +1.6
250,724 + Psest_0240 0.32 +1.0
250,724 + Psest_0240 0.32 +1.3
250,724 + Psest_0240 0.32 +0.7
250,725 - Psest_0240 0.32 -0.2
250,725 - Psest_0240 0.32 -0.6
250,725 - Psest_0240 0.32 -2.1
250,748 + Psest_0240 0.39 +0.8
251,019 + -0.1
251,203 + -0.4
251,203 + -0.1
251,204 - +1.6
251,204 - -1.8
251,326 + Psest_0241 0.15 +0.2
251,342 + Psest_0241 0.15 +0.8
251,343 - Psest_0241 0.15 -0.9
251,343 - Psest_0241 0.15 -0.7
251,343 - Psest_0241 0.15 +0.2
251,365 + Psest_0241 0.17 +0.8
251,408 + Psest_0241 0.19 -0.8
251,483 - Psest_0241 0.23 -2.7

Or see this region's nucleotide sequence