Experiment: Choline chloride 90 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0222 and Psest_0223 are separated by 146 nucleotides Psest_0223 and Psest_0224 are separated by 123 nucleotides Psest_0224 and Psest_0225 are separated by 87 nucleotides
Psest_0222: Psest_0222 - phosphate ABC transporter, ATP-binding protein, at 230,844 to 231,671
_0222
Psest_0223: Psest_0223 - phosphate transport system regulatory protein PhoU, at 231,818 to 232,546
_0223
Psest_0224: Psest_0224 - Transcriptional regulator, at 232,670 to 233,584
_0224
Psest_0225: Psest_0225 - Predicted permease, DMT superfamily, at 233,672 to 234,583
_0225
Position (kb) 232
233
234 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 231.749 kb on + strand at 232.524 kb on + strand at 232.524 kb on + strand at 232.524 kb on + strand at 232.524 kb on + strand at 232.524 kb on + strand at 232.524 kb on + strand at 232.524 kb on + strand at 232.525 kb on - strand at 232.525 kb on - strand at 232.525 kb on - strand at 232.612 kb on + strand at 232.634 kb on + strand at 232.634 kb on + strand at 232.635 kb on - strand at 232.698 kb on + strand at 232.698 kb on + strand at 232.699 kb on - strand at 232.770 kb on + strand, within Psest_0224 at 232.770 kb on + strand, within Psest_0224 at 232.770 kb on + strand, within Psest_0224 at 232.771 kb on - strand, within Psest_0224 at 232.771 kb on - strand, within Psest_0224 at 232.771 kb on - strand, within Psest_0224 at 232.782 kb on + strand, within Psest_0224 at 232.783 kb on - strand, within Psest_0224 at 232.914 kb on + strand, within Psest_0224 at 232.914 kb on + strand, within Psest_0224 at 232.915 kb on - strand, within Psest_0224 at 232.995 kb on + strand, within Psest_0224 at 232.995 kb on + strand, within Psest_0224 at 232.995 kb on + strand, within Psest_0224 at 233.005 kb on + strand, within Psest_0224 at 233.005 kb on + strand, within Psest_0224 at 233.005 kb on + strand, within Psest_0224 at 233.005 kb on + strand, within Psest_0224 at 233.005 kb on + strand, within Psest_0224 at 233.005 kb on + strand, within Psest_0224 at 233.005 kb on + strand, within Psest_0224 at 233.006 kb on - strand, within Psest_0224 at 233.006 kb on - strand, within Psest_0224 at 233.006 kb on - strand, within Psest_0224 at 233.055 kb on + strand, within Psest_0224 at 233.262 kb on + strand, within Psest_0224 at 233.370 kb on + strand, within Psest_0224 at 233.370 kb on + strand, within Psest_0224 at 233.370 kb on + strand, within Psest_0224 at 233.371 kb on - strand, within Psest_0224 at 233.371 kb on - strand, within Psest_0224 at 233.550 kb on + strand at 233.550 kb on + strand at 233.551 kb on - strand at 233.551 kb on - strand at 233.551 kb on - strand at 233.680 kb on + strand at 233.680 kb on + strand at 233.680 kb on + strand at 233.681 kb on - strand at 233.681 kb on - strand at 233.681 kb on - strand at 233.681 kb on - strand at 233.750 kb on + strand at 233.750 kb on + strand at 233.750 kb on + strand at 233.750 kb on + strand at 233.750 kb on + strand at 233.750 kb on + strand at 233.750 kb on + strand at 233.750 kb on + strand at 233.750 kb on + strand at 233.750 kb on + strand at 234.108 kb on + strand, within Psest_0225 at 234.108 kb on + strand, within Psest_0225 at 234.109 kb on - strand, within Psest_0225 at 234.109 kb on - strand, within Psest_0225 at 234.321 kb on - strand, within Psest_0225 at 234.582 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 90 mM remove 231,749 + -0.4 232,524 + +0.9 232,524 + -0.8 232,524 + +0.5 232,524 + -0.2 232,524 + -0.4 232,524 + +0.8 232,524 + +0.2 232,525 - -1.1 232,525 - -0.5 232,525 - +0.6 232,612 + -0.1 232,634 + +4.8 232,634 + +1.1 232,635 - -0.6 232,698 + -0.8 232,698 + -2.1 232,699 - +0.4 232,770 + Psest_0224 0.11 -0.2 232,770 + Psest_0224 0.11 -0.7 232,770 + Psest_0224 0.11 +2.3 232,771 - Psest_0224 0.11 -0.8 232,771 - Psest_0224 0.11 -0.6 232,771 - Psest_0224 0.11 -3.0 232,782 + Psest_0224 0.12 -2.1 232,783 - Psest_0224 0.12 -1.6 232,914 + Psest_0224 0.27 -0.8 232,914 + Psest_0224 0.27 -1.7 232,915 - Psest_0224 0.27 -0.1 232,995 + Psest_0224 0.36 +2.1 232,995 + Psest_0224 0.36 +0.0 232,995 + Psest_0224 0.36 +0.1 233,005 + Psest_0224 0.37 -2.9 233,005 + Psest_0224 0.37 +0.0 233,005 + Psest_0224 0.37 -1.9 233,005 + Psest_0224 0.37 -2.0 233,005 + Psest_0224 0.37 -0.2 233,005 + Psest_0224 0.37 -1.6 233,005 + Psest_0224 0.37 -0.9 233,006 - Psest_0224 0.37 +0.8 233,006 - Psest_0224 0.37 +0.6 233,006 - Psest_0224 0.37 +0.4 233,055 + Psest_0224 0.42 -2.0 233,262 + Psest_0224 0.65 -1.3 233,370 + Psest_0224 0.77 +1.9 233,370 + Psest_0224 0.77 -1.1 233,370 + Psest_0224 0.77 +1.7 233,371 - Psest_0224 0.77 -2.2 233,371 - Psest_0224 0.77 -2.5 233,550 + +0.1 233,550 + +1.0 233,551 - +0.6 233,551 - -0.6 233,551 - +0.9 233,680 + -0.5 233,680 + +1.0 233,680 + +3.2 233,681 - -0.3 233,681 - -0.5 233,681 - -0.6 233,681 - +1.2 233,750 + +1.0 233,750 + -0.2 233,750 + -2.2 233,750 + -1.0 233,750 + -2.4 233,750 + +0.8 233,750 + -0.2 233,750 + +0.4 233,750 + +0.1 233,750 + -2.6 234,108 + Psest_0225 0.48 -1.2 234,108 + Psest_0225 0.48 -0.3 234,109 - Psest_0225 0.48 -0.1 234,109 - Psest_0225 0.48 -0.3 234,321 - Psest_0225 0.71 +0.1 234,582 - +1.9
Or see this region's nucleotide sequence