Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1832

Experiment: Choline chloride 90 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1831 and Psest_1832 overlap by 8 nucleotidesPsest_1832 and Psest_1833 overlap by 41 nucleotides Psest_1831: Psest_1831 - bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family, at 1,932,669 to 1,933,436 _1831 Psest_1832: Psest_1832 - Predicted glycosyltransferases, at 1,933,429 to 1,934,304 _1832 Psest_1833: Psest_1833 - hypothetical protein, at 1,934,264 to 1,935,517 _1833 Position (kb) 1933 1934 1935Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1932.462 kb on - strandat 1932.462 kb on - strandat 1932.462 kb on - strandat 1932.558 kb on - strandat 1932.660 kb on + strandat 1932.675 kb on - strandat 1932.966 kb on + strand, within Psest_1831at 1933.267 kb on + strand, within Psest_1831at 1933.268 kb on - strand, within Psest_1831

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 90 mM
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1,932,462 - +0.5
1,932,462 - +0.3
1,932,462 - +1.8
1,932,558 - -1.9
1,932,660 + -3.0
1,932,675 - +0.8
1,932,966 + Psest_1831 0.39 +0.6
1,933,267 + Psest_1831 0.78 +0.6
1,933,268 - Psest_1831 0.78 -0.4

Or see this region's nucleotide sequence