Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12980

Experiment: p-Coumaric (C) 1.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) 1.5 mM
2,927,642	+				-0.1
2,927,642	+				-0.7
2,927,643	-				-0.1
2,927,643	-				-0.4
2,927,643	-				+0.6
2,927,694	+		PFLU_RS12970	0.14	-1.2
2,927,694	+		PFLU_RS12970	0.14	-0.8
2,927,694	+		PFLU_RS12970	0.14	+0.5
2,927,695	-		PFLU_RS12970	0.14	+1.5
2,927,695	-		PFLU_RS12970	0.14	-2.9
2,927,810	+		PFLU_RS12970	0.42	+0.1
2,927,810	+		PFLU_RS12970	0.42	+0.5
2,927,810	+		PFLU_RS12970	0.42	-1.6
2,927,810	+		PFLU_RS12970	0.42	+0.2
2,927,923	+		PFLU_RS12970	0.69	-0.6
2,927,923	+		PFLU_RS12970	0.69	+0.1
2,928,037	+				+0.6
2,928,038	-				-0.9
2,928,048	+				+0.5
2,928,048	+				-1.4
2,928,048	+				+0.8
2,928,048	+				+1.5
2,928,048	+				-0.3
2,928,048	+				-2.7
2,928,048	+				-0.1
2,928,048	+				-0.8
2,928,049	-				-0.2
2,928,049	-				+0.2
2,928,049	-				+2.2
2,928,049	-				-0.4
2,928,049	-				-1.5
2,928,049	-				+1.0
2,928,049	-				+1.9
2,928,049	-				+0.8
2,928,049	-				-0.1
2,928,202	+				-3.1
2,928,202	+				+0.5
2,928,202	+				-3.1
2,928,203	-				-1.7
2,928,242	-		PFLU_RS12975	0.17	+0.9
2,928,242	-		PFLU_RS12975	0.17	-2.9
2,928,295	+		PFLU_RS12975	0.28	+0.5
2,928,295	+		PFLU_RS12975	0.28	-2.3
2,928,295	+		PFLU_RS12975	0.28	+0.5
2,928,296	-		PFLU_RS12975	0.28	-1.3
2,928,296	-		PFLU_RS12975	0.28	-1.5
2,928,382	+		PFLU_RS12975	0.46	-2.8
2,928,382	+		PFLU_RS12975	0.46	-0.5
2,928,382	+		PFLU_RS12975	0.46	-3.3
2,928,386	+		PFLU_RS12975	0.46	-0.8
2,928,386	+		PFLU_RS12975	0.46	-1.6
2,928,386	+		PFLU_RS12975	0.46	-1.8
2,928,386	+		PFLU_RS12975	0.46	-3.0
2,928,387	-		PFLU_RS12975	0.47	-1.6
2,928,387	-		PFLU_RS12975	0.47	-2.5
2,928,387	-		PFLU_RS12975	0.47	-2.6
2,928,387	-		PFLU_RS12975	0.47	-1.5
2,928,635	+				-0.1
2,928,635	+				-2.3
2,928,636	-				-1.6
2,928,650	+				-2.6
2,928,651	-				+1.5
2,928,651	-				-0.8
2,928,689	+				-1.8
2,928,689	+				-2.6
2,928,689	+				+0.5
2,928,689	+				-1.9
2,928,689	+				-1.6
2,928,690	-				-1.5
2,928,690	-				-1.9
2,928,731	+				-1.6
2,928,731	+				-1.5
2,928,731	+				-1.9
2,928,731	+				-2.4
2,928,731	+				-2.6
2,928,731	+				-2.2
2,928,731	+				-2.1
2,928,731	+				-1.3
2,928,731	+				-0.5
2,928,731	+				-1.6
2,928,732	-				-1.9
2,928,732	-				-1.5
2,928,732	-				-2.4
2,928,732	-				-1.6
2,928,732	-				-2.9
2,928,732	-				-1.5
2,928,732	-				-0.1
2,928,732	-				-0.8
2,928,732	-				-2.1
2,928,962	+		PFLU_RS12980	0.20	-1.5
2,928,963	-		PFLU_RS12980	0.20	+0.5
2,928,963	-		PFLU_RS12980	0.20	-2.4
2,928,963	-		PFLU_RS12980	0.20	+3.1
2,929,196	+		PFLU_RS12980	0.34	-2.1
2,929,197	-		PFLU_RS12980	0.34	-1.9
2,929,292	+		PFLU_RS12980	0.40	-1.3
2,929,292	+		PFLU_RS12980	0.40	-1.9
2,929,293	-		PFLU_RS12980	0.40	-0.8
2,929,293	-		PFLU_RS12980	0.40	-0.1
2,929,293	-		PFLU_RS12980	0.40	-0.8
2,929,293	-		PFLU_RS12980	0.40	-0.1
2,929,400	+		PFLU_RS12980	0.46	+0.5
2,929,400	+		PFLU_RS12980	0.46	-2.8
2,929,400	+		PFLU_RS12980	0.46	-2.4
2,929,400	+		PFLU_RS12980	0.46	-0.5
2,929,400	+		PFLU_RS12980	0.46	-2.3
2,929,400	+		PFLU_RS12980	0.46	-1.5
2,929,401	-		PFLU_RS12980	0.46	-3.3
2,929,401	-		PFLU_RS12980	0.46	-1.8
2,929,401	-		PFLU_RS12980	0.46	-0.5
2,929,401	-		PFLU_RS12980	0.46	-2.2
2,929,528	+		PFLU_RS12980	0.54	+0.5
2,929,528	+		PFLU_RS12980	0.54	-0.1
2,929,529	-		PFLU_RS12980	0.54	-3.1
2,929,529	-		PFLU_RS12980	0.54	-2.2
2,929,553	+		PFLU_RS12980	0.55	-1.8
2,929,553	+		PFLU_RS12980	0.55	-1.9
2,929,553	+		PFLU_RS12980	0.55	-1.8
2,929,553	+		PFLU_RS12980	0.55	-0.3
2,929,553	+		PFLU_RS12980	0.55	-1.9
2,929,553	+		PFLU_RS12980	0.55	-1.8
2,929,553	+		PFLU_RS12980	0.55	-2.1
2,929,553	+		PFLU_RS12980	0.55	-0.8
2,929,554	-		PFLU_RS12980	0.55	-1.3
2,929,554	-		PFLU_RS12980	0.55	-1.5
2,929,554	-		PFLU_RS12980	0.55	-1.1
2,929,583	+		PFLU_RS12980	0.57	-0.8
2,929,583	+		PFLU_RS12980	0.57	-2.7
2,929,583	+		PFLU_RS12980	0.57	-1.5
2,929,607	+		PFLU_RS12980	0.59	-2.1
2,929,607	+		PFLU_RS12980	0.59	-3.2
2,929,607	+		PFLU_RS12980	0.59	-0.5
2,929,607	+		PFLU_RS12980	0.59	-2.4
2,929,608	-		PFLU_RS12980	0.59	-1.7
2,929,608	-		PFLU_RS12980	0.59	-1.7
2,929,644	+		PFLU_RS12980	0.61	-2.5
2,929,811	+		PFLU_RS12980	0.71	-0.8
2,929,932	+		PFLU_RS12980	0.78	-1.9
2,929,933	-		PFLU_RS12980	0.78	+0.5
2,929,933	-		PFLU_RS12980	0.78	+0.5
2,930,020	+		PFLU_RS12980	0.84	-0.5
2,930,020	+		PFLU_RS12980	0.84	-3.0
2,930,020	+		PFLU_RS12980	0.84	-3.2
2,930,020	+		PFLU_RS12980	0.84	+0.5
2,930,020	+		PFLU_RS12980	0.84	-2.9
2,930,020	+		PFLU_RS12980	0.84	-1.5
2,930,020	+		PFLU_RS12980	0.84	-2.4
2,930,021	-		PFLU_RS12980	0.84	-2.6
2,930,021	-		PFLU_RS12980	0.84	-0.8
2,930,021	-		PFLU_RS12980	0.84	-0.8
2,930,021	-		PFLU_RS12980	0.84	-0.8
2,930,048	+		PFLU_RS12980	0.85	+1.5
2,930,049	-		PFLU_RS12980	0.85	-0.8
2,930,049	-		PFLU_RS12980	0.85	-2.1
2,930,049	-		PFLU_RS12980	0.85	-1.3
2,930,115	-		PFLU_RS12980	0.89	-1.5
2,930,156	+				+0.5
2,930,156	+				-0.1
2,930,156	+				-0.1
2,930,156	+				-1.7
2,930,156	+				-1.5
2,930,157	-				-0.1
2,930,157	-				-1.1
2,930,157	-				-0.8
2,930,157	-				-2.1
2,930,157	-				+1.5
2,930,157	-				+0.5
2,930,157	-				-1.5
2,930,157	-				-1.7
2,930,212	+				-1.3
2,930,212	+				-0.8
2,930,212	+				-0.5
2,930,212	+				-1.1
2,930,212	+				-2.6
2,930,212	+				-0.8
2,930,212	+				-2.3
2,930,212	+				-2.6
2,930,212	+				-0.1
2,930,213	-				-1.1
2,930,213	-				+0.5
2,930,213	-				-1.8
2,930,213	-				-3.1
2,930,213	-				-0.8
2,930,213	-				-1.3
2,930,213	-				-1.1
2,930,216	+				-1.3
2,930,217	-				-0.5
2,930,273	+				-0.8
2,930,273	+				-3.1
2,930,274	-				-2.2
2,930,274	-				-2.7
2,930,282	+				-0.5
2,930,282	+				-0.1
2,930,282	+				-2.7
2,930,282	+				+0.2
2,930,282	+				-1.3
2,930,283	-				-1.1
2,930,283	-				-0.1
2,930,283	-				-0.5
2,930,283	-				-1.3
2,930,283	-				-0.1
2,930,284	+				-1.8
2,930,284	+				-2.9
2,930,284	+				-1.7
2,930,284	+				-0.5
2,930,284	+				-0.7
2,930,284	+				-1.6
2,930,284	+				-2.4
2,930,284	+				-2.2
2,930,284	+				-2.2
2,930,284	+				-2.5
2,930,284	+				-2.9
2,930,285	-				-1.2
2,930,285	-				-1.9
2,930,285	-				-1.1
2,930,285	-				-0.1
2,930,285	-				-2.1
2,930,285	-				-1.3
2,930,285	-				-2.2
2,930,285	-				-3.5
2,930,288	+				-1.7
2,930,288	+				-3.1
2,930,288	+				-1.9
2,930,288	+				-2.7
2,930,288	+				-0.4
2,930,288	+				-2.3
2,930,288	+				+0.5
2,930,288	+				-2.7
2,930,288	+				-2.2
2,930,288	+				-0.8
2,930,288	+				-2.3
2,930,288	+				+0.5
2,930,288	+				-0.8
2,930,288	+				-0.6
2,930,288	+				-1.9
2,930,288	+				-2.5
2,930,288	+				-1.5
2,930,288	+				-2.6
2,930,288	+				+0.5
2,930,288	+				-0.5
2,930,288	+				-1.1
2,930,288	+				-2.6
2,930,288	+				-1.1
2,930,288	+				-2.5
2,930,288	+				-0.5
2,930,288	+				-3.6
2,930,288	+				-3.9
2,930,288	+				-2.4
2,930,288	+				-1.8
2,930,288	+				-1.8
2,930,289	-				-0.5
2,930,289	-				+1.5
2,930,289	-				-2.3
2,930,289	-				-2.4
2,930,289	-				-2.1
2,930,289	-				-1.9
2,930,289	-				-1.5
2,930,289	-				-1.3
2,930,289	-				-0.8
2,930,289	-				-2.2
2,930,289	-				-1.3
2,930,289	-				-0.5
2,930,289	-				-2.9
2,930,289	-				-1.5
2,930,289	-				-0.5
2,930,289	-				-0.1
2,930,289	-				-0.1
2,930,289	-				-0.5
2,930,289	-				-1.5
2,930,289	-				+0.5
2,930,289	-				-2.7
2,930,289	-				-1.7
2,930,289	-				-1.8
2,930,289	-				-2.4
2,930,289	-				-1.5
2,930,289	-				-2.2
2,930,289	-				-2.1
2,930,289	-				-2.1
2,930,289	-				-1.3
2,930,289	-				-2.1
2,930,289	-				-1.9
2,930,289	-				-2.2
2,930,289	-				-0.1
2,930,289	-				-2.1
2,930,289	-				-2.4
2,930,289	-				-2.1
2,930,292	+				-2.2
2,930,292	+				-1.7
2,930,292	+				-3.1
2,930,292	+				-0.8
2,930,292	+				-2.4
2,930,292	+				-0.8
2,930,292	+				-2.4
2,930,292	+				-0.8
2,930,292	+				-1.4
2,930,292	+				-3.5
2,930,292	+				-2.3
2,930,292	+				-3.3
2,930,292	+				-1.7
2,930,292	+				-0.5
2,930,292	+				-2.1
2,930,292	+				-2.9
2,930,292	+				-2.9
2,930,292	+				-2.2
2,930,292	+				-2.1
2,930,292	+				-1.8
2,930,292	+				-1.3
2,930,292	+				-0.5
2,930,292	+				-3.4
2,930,292	+				-1.3
2,930,292	+				-1.8
2,930,292	+				-3.2
2,930,292	+				-3.2
2,930,292	+				-2.4
2,930,292	+				-1.1
2,930,292	+				-1.3
2,930,292	+				-2.3
2,930,292	+				-1.9
2,930,292	+				-2.7
2,930,292	+				-1.3
2,930,292	+				-1.8
2,930,292	+				-2.4
2,930,292	+				-3.1
2,930,292	+				-2.4
2,930,292	+				-1.5
2,930,293	-				-2.3
2,930,293	-				-2.4
2,930,293	-				-3.2
2,930,293	-				-2.5
2,930,293	-				-1.5
2,930,293	-				-2.1
2,930,293	-				-1.7
2,930,293	-				-1.1
2,930,293	-				-1.2
2,930,293	-				-1.5
2,930,293	-				-1.8
2,930,293	-				+1.5
2,930,293	-				-1.3
2,930,293	-				-1.3
2,930,293	-				+1.5
2,930,293	-				-0.1
2,930,293	-				-2.2
2,930,293	-				-2.1
2,930,293	-				-0.2
2,930,293	-				+0.1
2,930,293	-				-1.1
2,930,293	-				-2.4
2,930,293	-				-1.7
2,930,293	-				+0.1
2,930,293	-				-0.1
2,930,294	+				-3.2
2,930,294	+				-2.8
2,930,294	+				-0.1
2,930,294	+				-2.2
2,930,294	+				-2.7
2,930,294	+				-2.1
2,930,294	+				-0.1
2,930,294	+				-2.2
2,930,294	+				-2.2
2,930,294	+				-1.3
2,930,294	+				-1.3
2,930,294	+				-2.3
2,930,294	+				-1.4
2,930,294	+				-2.1
2,930,294	+				-3.0
2,930,294	+				-1.3
2,930,294	+				+0.5
2,930,294	+				-2.1
2,930,294	+				-1.6
2,930,294	+				-1.0
2,930,294	+				-3.0
2,930,294	+				-0.1
2,930,294	+				-0.1
2,930,294	+				-1.4
2,930,294	+				-1.5
2,930,294	+				-3.1
2,930,294	+				-2.2
2,930,294	+				-2.5
2,930,294	+				-2.6
2,930,294	+				-1.3
2,930,294	+				-2.7
2,930,295	-				-1.9
2,930,295	-				-3.1
2,930,295	-				-2.5
2,930,295	-				-1.8
2,930,295	-				-0.7
2,930,295	-				+0.5
2,930,295	-				-1.7
2,930,295	-				-1.0
2,930,295	-				-2.6
2,930,295	-				-1.3
2,930,295	-				-0.8
2,930,295	-				-1.1
2,930,295	-				+0.5
2,930,295	-				-1.7
2,930,295	-				-2.3
2,930,295	-				-2.2
2,930,295	-				-0.9
2,930,295	-				-2.1
2,930,295	-				-2.9
2,930,295	-				-1.7
2,930,295	-				-1.7
2,930,295	-				-2.3
2,930,357	+				-1.7
2,930,357	+				+0.5
2,930,358	-				-1.7
2,930,394	+				-0.6
2,930,394	+				+0.1
2,930,394	+				-0.5
2,930,395	-				-1.5
2,930,395	-				-1.7
2,930,397	-				-0.9
2,930,431	-				-1.3
2,930,431	-				-1.6
2,930,454	-				-2.4
2,930,472	+				-2.2
2,930,472	+				+1.8
2,930,472	+				+1.0
2,930,473	-				+2.1
2,930,473	-				+0.3
2,930,473	-				-2.7
2,930,473	-				-0.4
2,930,473	-				+1.1
2,930,473	-				-1.1
2,930,473	-				-0.9
2,930,473	-				+1.5
2,930,488	+				-1.5
2,930,488	+				-1.0
2,930,489	-				-0.3
2,930,501	+				-0.4
2,930,501	+				+0.5
2,930,501	+				+1.0
2,930,501	+				-1.0
2,930,502	-				-2.1
2,930,502	-				-0.6
2,930,502	-				+0.3
2,930,502	-				+0.3
2,930,503	+				+0.7
2,930,504	-				+0.2
2,930,504	-				-0.2
2,930,549	+				+0.2
2,930,637	+				+0.5
2,930,637	+				+0.3
2,930,637	+				-1.0
2,930,638	-				-0.3
2,930,638	-				+1.5
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