Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS06765

Experiment: p-Coumaric (C) 1.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFLU_RS06755 and PFLU_RS06760 are separated by 10 nucleotidesPFLU_RS06760 and PFLU_RS06765 are separated by 55 nucleotidesPFLU_RS06765 and PFLU_RS06770 are separated by 40 nucleotides PFLU_RS06755: PFLU_RS06755 - 3-carboxy-cis,cis-muconate cycloisomerase, at 1,509,231 to 1,510,595 _RS06755 PFLU_RS06760: PFLU_RS06760 - 3-oxoadipate enol-lactonase, at 1,510,606 to 1,511,397 _RS06760 PFLU_RS06765: PFLU_RS06765 - 4-carboxymuconolactone decarboxylase, at 1,511,453 to 1,511,851 _RS06765 PFLU_RS06770: PFLU_RS06770 - polysaccharide deacetylase family protein, at 1,511,892 to 1,512,776 _RS06770 Position (kb) 1511 1512Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1510.530 kb on + strandat 1510.530 kb on + strandat 1510.530 kb on + strandat 1510.531 kb on - strandat 1510.531 kb on - strandat 1510.531 kb on - strandat 1510.616 kb on + strandat 1510.616 kb on + strandat 1510.616 kb on + strandat 1510.616 kb on + strandat 1510.616 kb on + strandat 1510.616 kb on + strandat 1510.616 kb on + strandat 1510.617 kb on - strandat 1510.617 kb on - strandat 1510.617 kb on - strandat 1510.617 kb on - strandat 1510.617 kb on - strandat 1510.617 kb on - strandat 1510.642 kb on + strandat 1510.643 kb on - strandat 1510.643 kb on - strandat 1510.710 kb on + strand, within PFLU_RS06760at 1510.710 kb on + strand, within PFLU_RS06760at 1510.710 kb on + strand, within PFLU_RS06760at 1510.710 kb on + strand, within PFLU_RS06760at 1510.710 kb on + strand, within PFLU_RS06760at 1510.710 kb on + strand, within PFLU_RS06760at 1510.710 kb on + strand, within PFLU_RS06760at 1510.710 kb on + strand, within PFLU_RS06760at 1510.710 kb on + strand, within PFLU_RS06760at 1510.710 kb on + strand, within PFLU_RS06760at 1510.710 kb on + strand, within PFLU_RS06760at 1510.710 kb on + strand, within PFLU_RS06760at 1510.710 kb on + strand, within PFLU_RS06760at 1510.710 kb on + strand, within PFLU_RS06760at 1510.710 kb on + strand, within PFLU_RS06760at 1510.710 kb on + strand, within PFLU_RS06760at 1510.710 kb on + strand, within PFLU_RS06760at 1510.710 kb on + strand, within PFLU_RS06760at 1510.710 kb on + strand, within PFLU_RS06760at 1510.710 kb on + strand, within PFLU_RS06760at 1510.710 kb on + strand, within PFLU_RS06760at 1510.710 kb on + strand, within PFLU_RS06760at 1510.710 kb on + strand, within PFLU_RS06760at 1510.710 kb on + strand, within PFLU_RS06760at 1510.711 kb on - strand, within PFLU_RS06760at 1510.711 kb on - strand, within PFLU_RS06760at 1510.711 kb on - strand, within PFLU_RS06760at 1510.711 kb on - strand, within PFLU_RS06760at 1510.711 kb on - strand, within PFLU_RS06760at 1510.711 kb on - strand, within PFLU_RS06760at 1510.711 kb on - strand, within PFLU_RS06760at 1510.711 kb on - strand, within PFLU_RS06760at 1510.711 kb on - strand, within PFLU_RS06760at 1510.711 kb on - strand, within PFLU_RS06760at 1510.711 kb on - strand, within PFLU_RS06760at 1510.711 kb on - strand, within PFLU_RS06760at 1510.711 kb on - strand, within PFLU_RS06760at 1510.711 kb on - strand, within PFLU_RS06760at 1510.711 kb on - strand, within PFLU_RS06760at 1510.711 kb on - strand, within PFLU_RS06760at 1510.711 kb on - strand, within PFLU_RS06760at 1510.711 kb on - strand, within PFLU_RS06760at 1510.711 kb on - strand, within PFLU_RS06760at 1510.807 kb on + strand, within PFLU_RS06760at 1510.807 kb on + strand, within PFLU_RS06760at 1510.808 kb on - strand, within PFLU_RS06760at 1511.155 kb on + strand, within PFLU_RS06760at 1511.155 kb on + strand, within PFLU_RS06760at 1511.156 kb on - strand, within PFLU_RS06760at 1511.156 kb on - strand, within PFLU_RS06760at 1511.156 kb on - strand, within PFLU_RS06760at 1511.156 kb on - strand, within PFLU_RS06760at 1511.191 kb on + strand, within PFLU_RS06760at 1511.191 kb on + strand, within PFLU_RS06760at 1511.191 kb on + strand, within PFLU_RS06760at 1511.191 kb on + strand, within PFLU_RS06760at 1511.192 kb on - strand, within PFLU_RS06760at 1511.192 kb on - strand, within PFLU_RS06760at 1511.309 kb on - strand, within PFLU_RS06760at 1511.321 kb on - strandat 1511.395 kb on + strandat 1511.395 kb on + strandat 1511.396 kb on - strandat 1511.396 kb on - strandat 1511.396 kb on - strandat 1511.396 kb on - strandat 1511.438 kb on + strandat 1511.471 kb on + strandat 1511.472 kb on - strandat 1511.472 kb on - strandat 1511.472 kb on - strandat 1511.596 kb on + strand, within PFLU_RS06765at 1511.596 kb on + strand, within PFLU_RS06765at 1511.596 kb on + strand, within PFLU_RS06765at 1511.596 kb on + strand, within PFLU_RS06765at 1511.597 kb on - strand, within PFLU_RS06765at 1511.762 kb on + strand, within PFLU_RS06765at 1511.762 kb on + strand, within PFLU_RS06765at 1511.762 kb on + strand, within PFLU_RS06765at 1511.762 kb on + strand, within PFLU_RS06765at 1511.762 kb on + strand, within PFLU_RS06765at 1511.762 kb on + strand, within PFLU_RS06765at 1511.763 kb on - strand, within PFLU_RS06765at 1512.006 kb on - strand, within PFLU_RS06770at 1512.006 kb on - strand, within PFLU_RS06770at 1512.006 kb on - strand, within PFLU_RS06770at 1512.006 kb on - strand, within PFLU_RS06770at 1512.007 kb on + strand, within PFLU_RS06770at 1512.007 kb on + strand, within PFLU_RS06770at 1512.007 kb on + strand, within PFLU_RS06770at 1512.007 kb on + strand, within PFLU_RS06770at 1512.007 kb on + strand, within PFLU_RS06770at 1512.007 kb on + strand, within PFLU_RS06770at 1512.007 kb on + strand, within PFLU_RS06770at 1512.007 kb on + strand, within PFLU_RS06770at 1512.008 kb on - strand, within PFLU_RS06770at 1512.008 kb on - strand, within PFLU_RS06770at 1512.008 kb on - strand, within PFLU_RS06770at 1512.008 kb on - strand, within PFLU_RS06770at 1512.008 kb on - strand, within PFLU_RS06770at 1512.008 kb on - strand, within PFLU_RS06770at 1512.008 kb on - strand, within PFLU_RS06770at 1512.008 kb on - strand, within PFLU_RS06770at 1512.008 kb on - strand, within PFLU_RS06770at 1512.008 kb on - strand, within PFLU_RS06770at 1512.008 kb on - strand, within PFLU_RS06770at 1512.008 kb on - strand, within PFLU_RS06770at 1512.070 kb on + strand, within PFLU_RS06770at 1512.070 kb on + strand, within PFLU_RS06770at 1512.070 kb on + strand, within PFLU_RS06770at 1512.071 kb on - strand, within PFLU_RS06770at 1512.071 kb on - strand, within PFLU_RS06770at 1512.071 kb on - strand, within PFLU_RS06770at 1512.080 kb on + strand, within PFLU_RS06770at 1512.080 kb on + strand, within PFLU_RS06770at 1512.080 kb on + strand, within PFLU_RS06770at 1512.080 kb on + strand, within PFLU_RS06770at 1512.080 kb on + strand, within PFLU_RS06770at 1512.080 kb on + strand, within PFLU_RS06770at 1512.081 kb on - strand, within PFLU_RS06770at 1512.081 kb on - strand, within PFLU_RS06770at 1512.081 kb on - strand, within PFLU_RS06770at 1512.081 kb on - strand, within PFLU_RS06770at 1512.081 kb on - strand, within PFLU_RS06770at 1512.081 kb on - strand, within PFLU_RS06770at 1512.081 kb on - strand, within PFLU_RS06770at 1512.081 kb on - strand, within PFLU_RS06770at 1512.081 kb on - strand, within PFLU_RS06770at 1512.081 kb on - strand, within PFLU_RS06770at 1512.081 kb on - strand, within PFLU_RS06770at 1512.081 kb on - strand, within PFLU_RS06770at 1512.094 kb on + strand, within PFLU_RS06770at 1512.094 kb on + strand, within PFLU_RS06770at 1512.095 kb on - strand, within PFLU_RS06770at 1512.196 kb on + strand, within PFLU_RS06770at 1512.296 kb on - strand, within PFLU_RS06770at 1512.296 kb on - strand, within PFLU_RS06770at 1512.296 kb on - strand, within PFLU_RS06770at 1512.308 kb on + strand, within PFLU_RS06770at 1512.319 kb on + strand, within PFLU_RS06770at 1512.320 kb on - strand, within PFLU_RS06770at 1512.320 kb on - strand, within PFLU_RS06770at 1512.437 kb on + strand, within PFLU_RS06770at 1512.437 kb on + strand, within PFLU_RS06770at 1512.437 kb on + strand, within PFLU_RS06770at 1512.437 kb on + strand, within PFLU_RS06770at 1512.437 kb on + strand, within PFLU_RS06770at 1512.437 kb on + strand, within PFLU_RS06770at 1512.438 kb on - strand, within PFLU_RS06770at 1512.484 kb on + strand, within PFLU_RS06770at 1512.485 kb on - strand, within PFLU_RS06770at 1512.485 kb on - strand, within PFLU_RS06770at 1512.623 kb on + strand, within PFLU_RS06770at 1512.624 kb on - strand, within PFLU_RS06770at 1512.625 kb on + strand, within PFLU_RS06770at 1512.625 kb on + strand, within PFLU_RS06770at 1512.625 kb on + strand, within PFLU_RS06770at 1512.625 kb on + strand, within PFLU_RS06770at 1512.626 kb on - strand, within PFLU_RS06770at 1512.729 kb on + strandat 1512.730 kb on - strandat 1512.730 kb on - strandat 1512.769 kb on + strandat 1512.769 kb on + strandat 1512.769 kb on + strandat 1512.769 kb on + strandat 1512.770 kb on - strandat 1512.770 kb on - strandat 1512.770 kb on - strandat 1512.812 kb on + strandat 1512.813 kb on - strandat 1512.813 kb on - strandat 1512.848 kb on + strandat 1512.848 kb on + strandat 1512.848 kb on + strandat 1512.848 kb on + strandat 1512.848 kb on + strandat 1512.849 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C) 1.5 mM
remove
1,510,530 + -1.5
1,510,530 + -0.2
1,510,530 + -1.7
1,510,531 - -2.8
1,510,531 - -3.2
1,510,531 - -2.2
1,510,616 + -3.0
1,510,616 + -1.8
1,510,616 + -2.3
1,510,616 + -2.5
1,510,616 + -2.1
1,510,616 + -2.1
1,510,616 + -0.8
1,510,617 - -1.0
1,510,617 - -3.2
1,510,617 - -3.3
1,510,617 - -2.4
1,510,617 - -3.2
1,510,617 - -2.7
1,510,642 + -2.7
1,510,643 - +0.8
1,510,643 - -2.4
1,510,710 + PFLU_RS06760 0.13 -0.5
1,510,710 + PFLU_RS06760 0.13 -1.7
1,510,710 + PFLU_RS06760 0.13 -1.0
1,510,710 + PFLU_RS06760 0.13 -3.5
1,510,710 + PFLU_RS06760 0.13 -1.5
1,510,710 + PFLU_RS06760 0.13 -0.8
1,510,710 + PFLU_RS06760 0.13 -2.8
1,510,710 + PFLU_RS06760 0.13 -2.7
1,510,710 + PFLU_RS06760 0.13 -3.3
1,510,710 + PFLU_RS06760 0.13 -0.4
1,510,710 + PFLU_RS06760 0.13 -0.9
1,510,710 + PFLU_RS06760 0.13 -2.3
1,510,710 + PFLU_RS06760 0.13 -1.1
1,510,710 + PFLU_RS06760 0.13 -1.2
1,510,710 + PFLU_RS06760 0.13 -3.7
1,510,710 + PFLU_RS06760 0.13 -1.9
1,510,710 + PFLU_RS06760 0.13 -3.1
1,510,710 + PFLU_RS06760 0.13 -2.1
1,510,710 + PFLU_RS06760 0.13 -2.1
1,510,710 + PFLU_RS06760 0.13 -2.7
1,510,710 + PFLU_RS06760 0.13 -2.7
1,510,710 + PFLU_RS06760 0.13 -3.0
1,510,710 + PFLU_RS06760 0.13 -2.4
1,510,710 + PFLU_RS06760 0.13 -3.4
1,510,711 - PFLU_RS06760 0.13 -2.8
1,510,711 - PFLU_RS06760 0.13 -3.6
1,510,711 - PFLU_RS06760 0.13 +0.2
1,510,711 - PFLU_RS06760 0.13 -1.4
1,510,711 - PFLU_RS06760 0.13 -0.5
1,510,711 - PFLU_RS06760 0.13 -0.5
1,510,711 - PFLU_RS06760 0.13 -0.5
1,510,711 - PFLU_RS06760 0.13 -1.2
1,510,711 - PFLU_RS06760 0.13 -2.1
1,510,711 - PFLU_RS06760 0.13 -1.8
1,510,711 - PFLU_RS06760 0.13 -2.7
1,510,711 - PFLU_RS06760 0.13 -1.0
1,510,711 - PFLU_RS06760 0.13 -1.1
1,510,711 - PFLU_RS06760 0.13 -3.4
1,510,711 - PFLU_RS06760 0.13 -2.6
1,510,711 - PFLU_RS06760 0.13 -1.8
1,510,711 - PFLU_RS06760 0.13 -2.0
1,510,711 - PFLU_RS06760 0.13 -2.9
1,510,711 - PFLU_RS06760 0.13 -2.9
1,510,807 + PFLU_RS06760 0.25 -1.4
1,510,807 + PFLU_RS06760 0.25 -2.1
1,510,808 - PFLU_RS06760 0.26 -3.1
1,511,155 + PFLU_RS06760 0.69 -2.8
1,511,155 + PFLU_RS06760 0.69 -1.4
1,511,156 - PFLU_RS06760 0.69 -3.9
1,511,156 - PFLU_RS06760 0.69 -0.5
1,511,156 - PFLU_RS06760 0.69 -1.8
1,511,156 - PFLU_RS06760 0.69 -1.7
1,511,191 + PFLU_RS06760 0.74 -1.4
1,511,191 + PFLU_RS06760 0.74 -1.1
1,511,191 + PFLU_RS06760 0.74 -2.9
1,511,191 + PFLU_RS06760 0.74 -2.4
1,511,192 - PFLU_RS06760 0.74 -2.2
1,511,192 - PFLU_RS06760 0.74 +0.8
1,511,309 - PFLU_RS06760 0.89 -2.1
1,511,321 - -1.9
1,511,395 + +0.2
1,511,395 + -0.1
1,511,396 - -1.1
1,511,396 - -0.5
1,511,396 - +0.8
1,511,396 - -0.2
1,511,438 + -1.1
1,511,471 + -3.0
1,511,472 - -3.6
1,511,472 - -1.5
1,511,472 - -2.4
1,511,596 + PFLU_RS06765 0.36 -1.5
1,511,596 + PFLU_RS06765 0.36 -2.2
1,511,596 + PFLU_RS06765 0.36 -3.3
1,511,596 + PFLU_RS06765 0.36 -2.8
1,511,597 - PFLU_RS06765 0.36 -3.0
1,511,762 + PFLU_RS06765 0.77 -3.2
1,511,762 + PFLU_RS06765 0.77 -2.4
1,511,762 + PFLU_RS06765 0.77 -2.5
1,511,762 + PFLU_RS06765 0.77 -1.3
1,511,762 + PFLU_RS06765 0.77 -4.9
1,511,762 + PFLU_RS06765 0.77 -1.7
1,511,763 - PFLU_RS06765 0.78 -1.0
1,512,006 - PFLU_RS06770 0.13 +0.9
1,512,006 - PFLU_RS06770 0.13 +0.6
1,512,006 - PFLU_RS06770 0.13 -0.2
1,512,006 - PFLU_RS06770 0.13 +0.8
1,512,007 + PFLU_RS06770 0.13 -1.6
1,512,007 + PFLU_RS06770 0.13 -0.4
1,512,007 + PFLU_RS06770 0.13 -2.4
1,512,007 + PFLU_RS06770 0.13 +0.0
1,512,007 + PFLU_RS06770 0.13 -0.2
1,512,007 + PFLU_RS06770 0.13 -0.2
1,512,007 + PFLU_RS06770 0.13 +0.1
1,512,007 + PFLU_RS06770 0.13 +0.7
1,512,008 - PFLU_RS06770 0.13 -1.2
1,512,008 - PFLU_RS06770 0.13 +1.3
1,512,008 - PFLU_RS06770 0.13 -0.5
1,512,008 - PFLU_RS06770 0.13 +0.5
1,512,008 - PFLU_RS06770 0.13 +1.0
1,512,008 - PFLU_RS06770 0.13 +1.4
1,512,008 - PFLU_RS06770 0.13 -0.6
1,512,008 - PFLU_RS06770 0.13 +1.6
1,512,008 - PFLU_RS06770 0.13 -1.1
1,512,008 - PFLU_RS06770 0.13 +0.5
1,512,008 - PFLU_RS06770 0.13 +0.1
1,512,008 - PFLU_RS06770 0.13 +0.1
1,512,070 + PFLU_RS06770 0.20 -0.7
1,512,070 + PFLU_RS06770 0.20 +0.7
1,512,070 + PFLU_RS06770 0.20 +0.6
1,512,071 - PFLU_RS06770 0.20 -0.2
1,512,071 - PFLU_RS06770 0.20 -0.7
1,512,071 - PFLU_RS06770 0.20 +1.2
1,512,080 + PFLU_RS06770 0.21 -1.1
1,512,080 + PFLU_RS06770 0.21 +1.6
1,512,080 + PFLU_RS06770 0.21 +0.8
1,512,080 + PFLU_RS06770 0.21 -1.3
1,512,080 + PFLU_RS06770 0.21 +0.4
1,512,080 + PFLU_RS06770 0.21 +1.8
1,512,081 - PFLU_RS06770 0.21 -1.2
1,512,081 - PFLU_RS06770 0.21 +2.1
1,512,081 - PFLU_RS06770 0.21 +0.8
1,512,081 - PFLU_RS06770 0.21 -0.8
1,512,081 - PFLU_RS06770 0.21 -0.8
1,512,081 - PFLU_RS06770 0.21 -0.3
1,512,081 - PFLU_RS06770 0.21 +0.5
1,512,081 - PFLU_RS06770 0.21 +0.5
1,512,081 - PFLU_RS06770 0.21 -0.0
1,512,081 - PFLU_RS06770 0.21 -0.2
1,512,081 - PFLU_RS06770 0.21 -0.2
1,512,081 - PFLU_RS06770 0.21 +2.1
1,512,094 + PFLU_RS06770 0.23 +0.2
1,512,094 + PFLU_RS06770 0.23 -0.9
1,512,095 - PFLU_RS06770 0.23 -0.4
1,512,196 + PFLU_RS06770 0.34 +0.1
1,512,296 - PFLU_RS06770 0.46 -0.3
1,512,296 - PFLU_RS06770 0.46 -1.9
1,512,296 - PFLU_RS06770 0.46 -0.2
1,512,308 + PFLU_RS06770 0.47 -0.6
1,512,319 + PFLU_RS06770 0.48 +0.7
1,512,320 - PFLU_RS06770 0.48 +0.0
1,512,320 - PFLU_RS06770 0.48 +0.2
1,512,437 + PFLU_RS06770 0.62 +0.0
1,512,437 + PFLU_RS06770 0.62 -0.3
1,512,437 + PFLU_RS06770 0.62 -2.2
1,512,437 + PFLU_RS06770 0.62 +1.8
1,512,437 + PFLU_RS06770 0.62 +0.1
1,512,437 + PFLU_RS06770 0.62 +1.0
1,512,438 - PFLU_RS06770 0.62 +0.3
1,512,484 + PFLU_RS06770 0.67 -0.3
1,512,485 - PFLU_RS06770 0.67 +2.4
1,512,485 - PFLU_RS06770 0.67 +0.6
1,512,623 + PFLU_RS06770 0.83 -0.8
1,512,624 - PFLU_RS06770 0.83 -0.0
1,512,625 + PFLU_RS06770 0.83 -0.4
1,512,625 + PFLU_RS06770 0.83 -2.2
1,512,625 + PFLU_RS06770 0.83 +2.8
1,512,625 + PFLU_RS06770 0.83 -0.1
1,512,626 - PFLU_RS06770 0.83 -0.7
1,512,729 + -0.9
1,512,730 - -0.3
1,512,730 - -0.9
1,512,769 + -0.7
1,512,769 + +0.5
1,512,769 + +0.3
1,512,769 + -2.1
1,512,770 - +1.0
1,512,770 - +0.2
1,512,770 - +2.2
1,512,812 + +0.6
1,512,813 - +0.0
1,512,813 - +0.2
1,512,848 + +0.6
1,512,848 + -0.7
1,512,848 + -0.9
1,512,848 + -1.0
1,512,848 + -0.2
1,512,849 - -1.5

Or see this region's nucleotide sequence