Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0541 and Psest_0542 are separated by 220 nucleotides Psest_0542 and Psest_0543 are separated by 80 nucleotides Psest_0543 and Psest_0544 are separated by 15 nucleotides Psest_0544 and Psest_0545 are separated by 76 nucleotides
Psest_0541: Psest_0541 - succinate CoA transferases, at 596,161 to 597,672
_0541
Psest_0542: Psest_0542 - AMP nucleosidase, at 597,893 to 599,368
_0542
Psest_0543: Psest_0543 - Protein of unknown function (DUF2789)., at 599,449 to 599,691
_0543
Psest_0544: Psest_0544 - Hydrogenase/urease accessory protein, at 599,707 to 600,279
_0544
Psest_0545: Psest_0545 - urease accessory protein UreG, at 600,356 to 600,970
_0545
Position (kb)
597
598
599
600 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 597.158 kb on - strand, within Psest_0541 at 597.158 kb on - strand, within Psest_0541 at 597.158 kb on - strand, within Psest_0541 at 597.262 kb on + strand, within Psest_0541 at 597.262 kb on + strand, within Psest_0541 at 597.263 kb on - strand, within Psest_0541 at 597.263 kb on - strand, within Psest_0541 at 597.263 kb on - strand, within Psest_0541 at 597.348 kb on + strand, within Psest_0541 at 597.348 kb on + strand, within Psest_0541 at 597.348 kb on + strand, within Psest_0541 at 597.348 kb on + strand, within Psest_0541 at 597.349 kb on - strand, within Psest_0541 at 597.349 kb on - strand, within Psest_0541 at 597.349 kb on - strand, within Psest_0541 at 597.349 kb on - strand, within Psest_0541 at 597.469 kb on + strand, within Psest_0541 at 597.470 kb on - strand, within Psest_0541 at 597.470 kb on - strand, within Psest_0541 at 597.562 kb on + strand at 597.670 kb on + strand at 597.670 kb on + strand at 597.670 kb on + strand at 597.670 kb on + strand at 597.670 kb on + strand at 597.671 kb on - strand at 597.671 kb on - strand at 597.835 kb on + strand at 597.836 kb on - strand at 597.837 kb on + strand at 597.837 kb on + strand at 597.837 kb on + strand at 597.837 kb on + strand at 597.837 kb on + strand at 597.837 kb on + strand at 597.837 kb on + strand at 597.837 kb on + strand at 597.837 kb on + strand at 597.838 kb on - strand at 597.838 kb on - strand at 597.838 kb on - strand at 597.838 kb on - strand at 597.838 kb on - strand at 597.838 kb on - strand at 597.838 kb on - strand at 597.838 kb on - strand at 597.865 kb on - strand at 597.865 kb on - strand at 597.877 kb on + strand at 597.888 kb on + strand at 598.010 kb on + strand at 598.011 kb on - strand at 598.011 kb on - strand at 598.015 kb on - strand at 598.083 kb on - strand, within Psest_0542 at 598.083 kb on - strand, within Psest_0542 at 598.122 kb on - strand, within Psest_0542 at 598.148 kb on + strand, within Psest_0542 at 598.148 kb on + strand, within Psest_0542 at 598.275 kb on - strand, within Psest_0542 at 598.275 kb on - strand, within Psest_0542 at 598.275 kb on - strand, within Psest_0542 at 598.275 kb on - strand, within Psest_0542 at 598.375 kb on + strand, within Psest_0542 at 598.392 kb on - strand, within Psest_0542 at 598.475 kb on + strand, within Psest_0542 at 598.475 kb on + strand, within Psest_0542 at 598.475 kb on + strand, within Psest_0542 at 598.476 kb on - strand, within Psest_0542 at 598.476 kb on - strand, within Psest_0542 at 598.500 kb on + strand, within Psest_0542 at 598.500 kb on + strand, within Psest_0542 at 598.500 kb on + strand, within Psest_0542 at 598.501 kb on - strand, within Psest_0542 at 598.501 kb on - strand, within Psest_0542 at 598.526 kb on + strand, within Psest_0542 at 598.526 kb on + strand, within Psest_0542 at 598.527 kb on - strand, within Psest_0542 at 598.527 kb on - strand, within Psest_0542 at 598.798 kb on - strand, within Psest_0542 at 598.865 kb on + strand, within Psest_0542 at 598.865 kb on + strand, within Psest_0542 at 598.865 kb on + strand, within Psest_0542 at 598.866 kb on - strand, within Psest_0542 at 598.883 kb on + strand, within Psest_0542 at 598.883 kb on + strand, within Psest_0542 at 598.883 kb on + strand, within Psest_0542 at 598.883 kb on + strand, within Psest_0542 at 598.883 kb on + strand, within Psest_0542 at 598.884 kb on - strand, within Psest_0542 at 598.884 kb on - strand, within Psest_0542 at 598.884 kb on - strand, within Psest_0542 at 598.884 kb on - strand, within Psest_0542 at 598.884 kb on - strand, within Psest_0542 at 599.171 kb on + strand, within Psest_0542 at 599.246 kb on + strand at 599.246 kb on + strand at 599.247 kb on - strand at 599.247 kb on - strand at 599.247 kb on - strand at 599.408 kb on + strand at 599.409 kb on - strand at 599.415 kb on - strand at 599.415 kb on - strand at 599.415 kb on - strand at 599.415 kb on - strand at 599.475 kb on + strand, within Psest_0543 at 599.563 kb on + strand, within Psest_0543 at 600.124 kb on + strand, within Psest_0544 at 600.125 kb on - strand, within Psest_0544 at 600.271 kb on + strand at 600.271 kb on + strand at 600.271 kb on + strand at 600.271 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 597,158 - Psest_0541 0.66 -0.7 597,158 - Psest_0541 0.66 -0.6 597,158 - Psest_0541 0.66 -1.4 597,262 + Psest_0541 0.73 +1.5 597,262 + Psest_0541 0.73 +0.9 597,263 - Psest_0541 0.73 +1.8 597,263 - Psest_0541 0.73 +0.7 597,263 - Psest_0541 0.73 +0.5 597,348 + Psest_0541 0.79 -0.4 597,348 + Psest_0541 0.79 -0.1 597,348 + Psest_0541 0.79 +0.7 597,348 + Psest_0541 0.79 +1.4 597,349 - Psest_0541 0.79 -0.8 597,349 - Psest_0541 0.79 +0.8 597,349 - Psest_0541 0.79 -0.8 597,349 - Psest_0541 0.79 -0.8 597,469 + Psest_0541 0.87 -0.3 597,470 - Psest_0541 0.87 -2.8 597,470 - Psest_0541 0.87 +1.8 597,562 + +1.7 597,670 + +2.5 597,670 + -2.2 597,670 + -0.1 597,670 + +1.5 597,670 + -1.7 597,671 - +1.5 597,671 - -1.6 597,835 + +1.8 597,836 - +0.1 597,837 + +2.9 597,837 + +3.3 597,837 + +0.4 597,837 + +1.3 597,837 + -1.0 597,837 + +0.4 597,837 + -0.3 597,837 + -0.1 597,837 + +0.6 597,838 - -0.7 597,838 - -1.9 597,838 - -0.7 597,838 - +0.7 597,838 - -0.6 597,838 - +0.3 597,838 - +0.7 597,838 - +0.5 597,865 - +1.8 597,865 - -0.2 597,877 + -2.5 597,888 + +0.3 598,010 + -0.3 598,011 - -0.6 598,011 - +0.5 598,015 - +2.6 598,083 - Psest_0542 0.13 -0.9 598,083 - Psest_0542 0.13 -1.1 598,122 - Psest_0542 0.16 +0.5 598,148 + Psest_0542 0.17 -1.5 598,148 + Psest_0542 0.17 -0.3 598,275 - Psest_0542 0.26 -1.0 598,275 - Psest_0542 0.26 -0.4 598,275 - Psest_0542 0.26 -1.1 598,275 - Psest_0542 0.26 -2.6 598,375 + Psest_0542 0.33 -1.9 598,392 - Psest_0542 0.34 -1.7 598,475 + Psest_0542 0.39 -0.0 598,475 + Psest_0542 0.39 -0.0 598,475 + Psest_0542 0.39 -1.0 598,476 - Psest_0542 0.39 -0.2 598,476 - Psest_0542 0.39 -1.5 598,500 + Psest_0542 0.41 -0.5 598,500 + Psest_0542 0.41 -0.7 598,500 + Psest_0542 0.41 -1.8 598,501 - Psest_0542 0.41 -3.0 598,501 - Psest_0542 0.41 -1.0 598,526 + Psest_0542 0.43 -0.6 598,526 + Psest_0542 0.43 +0.0 598,527 - Psest_0542 0.43 -1.3 598,527 - Psest_0542 0.43 -0.3 598,798 - Psest_0542 0.61 +0.1 598,865 + Psest_0542 0.66 -2.4 598,865 + Psest_0542 0.66 -0.4 598,865 + Psest_0542 0.66 +0.9 598,866 - Psest_0542 0.66 +1.3 598,883 + Psest_0542 0.67 -0.7 598,883 + Psest_0542 0.67 -1.9 598,883 + Psest_0542 0.67 -1.1 598,883 + Psest_0542 0.67 -3.0 598,883 + Psest_0542 0.67 -0.6 598,884 - Psest_0542 0.67 -2.6 598,884 - Psest_0542 0.67 -1.9 598,884 - Psest_0542 0.67 -0.4 598,884 - Psest_0542 0.67 -2.0 598,884 - Psest_0542 0.67 -2.0 599,171 + Psest_0542 0.87 -1.3 599,246 + +0.7 599,246 + -0.4 599,247 - -1.5 599,247 - -0.5 599,247 - -1.5 599,408 + +0.3 599,409 - -0.5 599,415 - -1.0 599,415 - +0.1 599,415 - -2.4 599,415 - -0.0 599,475 + Psest_0543 0.11 +1.2 599,563 + Psest_0543 0.47 +0.6 600,124 + Psest_0544 0.73 -0.6 600,125 - Psest_0544 0.73 -2.6 600,271 + -0.1 600,271 + -1.3 600,271 + +2.1 600,271 + +1.5
Or see this region's nucleotide sequence