Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0442 and Psest_0443 are separated by 432 nucleotides Psest_0443 and Psest_0444 are separated by 127 nucleotides Psest_0444 and Psest_0445 are separated by 111 nucleotides
Psest_0442: Psest_0442 - ATPases of the AAA+ class, at 482,192 to 483,178
_0442
Psest_0443: Psest_0443 - methionine-S-sulfoxide reductase, at 483,611 to 484,156
_0443
Psest_0444: Psest_0444 - methionine-S-sulfoxide reductase, at 484,284 to 484,706
_0444
Psest_0445: Psest_0445 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 484,818 to 487,490
_0445
Position (kb) 483
484
485 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 482.753 kb on + strand, within Psest_0442 at 482.753 kb on + strand, within Psest_0442 at 482.821 kb on + strand, within Psest_0442 at 482.864 kb on + strand, within Psest_0442 at 482.873 kb on + strand, within Psest_0442 at 482.923 kb on + strand, within Psest_0442 at 482.923 kb on + strand, within Psest_0442 at 482.923 kb on + strand, within Psest_0442 at 482.923 kb on + strand, within Psest_0442 at 482.933 kb on + strand, within Psest_0442 at 482.933 kb on + strand, within Psest_0442 at 482.933 kb on + strand, within Psest_0442 at 482.933 kb on + strand, within Psest_0442 at 482.933 kb on + strand, within Psest_0442 at 482.979 kb on + strand, within Psest_0442 at 482.979 kb on + strand, within Psest_0442 at 482.998 kb on + strand, within Psest_0442 at 482.998 kb on + strand, within Psest_0442 at 483.001 kb on + strand, within Psest_0442 at 483.001 kb on + strand, within Psest_0442 at 483.091 kb on + strand at 483.215 kb on + strand at 483.215 kb on + strand at 483.402 kb on - strand at 483.506 kb on + strand at 483.528 kb on + strand at 483.529 kb on - strand at 483.694 kb on + strand, within Psest_0443 at 483.764 kb on + strand, within Psest_0443 at 483.816 kb on - strand, within Psest_0443 at 483.837 kb on - strand, within Psest_0443 at 483.906 kb on - strand, within Psest_0443 at 484.019 kb on + strand, within Psest_0443 at 484.019 kb on + strand, within Psest_0443 at 484.019 kb on + strand, within Psest_0443 at 484.019 kb on + strand, within Psest_0443 at 484.019 kb on + strand, within Psest_0443 at 484.019 kb on + strand, within Psest_0443 at 484.019 kb on + strand, within Psest_0443 at 484.019 kb on + strand, within Psest_0443 at 484.020 kb on - strand, within Psest_0443 at 484.021 kb on + strand, within Psest_0443 at 484.021 kb on + strand, within Psest_0443 at 484.021 kb on + strand, within Psest_0443 at 484.021 kb on + strand, within Psest_0443 at 484.022 kb on - strand, within Psest_0443 at 484.029 kb on + strand, within Psest_0443 at 484.029 kb on + strand, within Psest_0443 at 484.029 kb on + strand, within Psest_0443 at 484.029 kb on + strand, within Psest_0443 at 484.029 kb on + strand, within Psest_0443 at 484.029 kb on + strand, within Psest_0443 at 484.029 kb on + strand, within Psest_0443 at 484.029 kb on + strand, within Psest_0443 at 484.029 kb on + strand, within Psest_0443 at 484.030 kb on - strand, within Psest_0443 at 484.059 kb on + strand, within Psest_0443 at 484.136 kb on + strand at 484.169 kb on - strand at 484.169 kb on - strand at 484.231 kb on + strand at 484.231 kb on + strand at 484.232 kb on - strand at 484.251 kb on + strand at 484.251 kb on + strand at 484.251 kb on + strand at 484.251 kb on + strand at 484.251 kb on + strand at 484.251 kb on + strand at 484.251 kb on + strand at 484.251 kb on + strand at 484.251 kb on + strand at 484.252 kb on - strand at 484.252 kb on - strand at 484.252 kb on - strand at 484.255 kb on + strand at 484.255 kb on + strand at 484.255 kb on + strand at 484.255 kb on + strand at 484.255 kb on + strand at 484.255 kb on + strand at 484.285 kb on + strand at 484.285 kb on + strand at 484.290 kb on + strand at 484.290 kb on + strand at 484.291 kb on - strand at 484.296 kb on + strand at 484.296 kb on + strand at 484.296 kb on + strand at 484.314 kb on + strand at 484.390 kb on - strand, within Psest_0444 at 484.441 kb on + strand, within Psest_0444 at 484.442 kb on - strand, within Psest_0444 at 484.471 kb on + strand, within Psest_0444 at 484.548 kb on + strand, within Psest_0444 at 484.549 kb on - strand, within Psest_0444 at 484.603 kb on + strand, within Psest_0444 at 484.603 kb on + strand, within Psest_0444 at 484.603 kb on + strand, within Psest_0444 at 484.603 kb on + strand, within Psest_0444 at 484.603 kb on + strand, within Psest_0444 at 484.603 kb on + strand, within Psest_0444 at 484.603 kb on + strand, within Psest_0444 at 484.604 kb on - strand, within Psest_0444 at 484.604 kb on - strand, within Psest_0444 at 484.618 kb on - strand, within Psest_0444 at 484.624 kb on - strand, within Psest_0444 at 484.738 kb on + strand at 484.738 kb on + strand at 484.739 kb on - strand at 484.739 kb on - strand at 484.739 kb on - strand at 484.743 kb on + strand at 484.744 kb on - strand at 484.760 kb on + strand at 484.761 kb on - strand at 484.761 kb on - strand at 484.888 kb on + strand at 484.888 kb on + strand at 484.889 kb on - strand at 485.036 kb on + strand at 485.093 kb on - strand, within Psest_0445
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 482,753 + Psest_0442 0.57 +2.3 482,753 + Psest_0442 0.57 -1.8 482,821 + Psest_0442 0.64 -0.5 482,864 + Psest_0442 0.68 -0.9 482,873 + Psest_0442 0.69 +0.3 482,923 + Psest_0442 0.74 +0.7 482,923 + Psest_0442 0.74 -1.5 482,923 + Psest_0442 0.74 +0.3 482,923 + Psest_0442 0.74 -1.2 482,933 + Psest_0442 0.75 +0.7 482,933 + Psest_0442 0.75 +0.3 482,933 + Psest_0442 0.75 -0.9 482,933 + Psest_0442 0.75 +1.3 482,933 + Psest_0442 0.75 +2.3 482,979 + Psest_0442 0.80 +1.3 482,979 + Psest_0442 0.80 -0.3 482,998 + Psest_0442 0.82 +1.3 482,998 + Psest_0442 0.82 +0.7 483,001 + Psest_0442 0.82 -1.0 483,001 + Psest_0442 0.82 +0.3 483,091 + +2.3 483,215 + +1.7 483,215 + -0.4 483,402 - +1.3 483,506 + +2.0 483,528 + -1.3 483,529 - -1.7 483,694 + Psest_0443 0.15 +1.4 483,764 + Psest_0443 0.28 -0.3 483,816 - Psest_0443 0.38 +0.4 483,837 - Psest_0443 0.41 +3.1 483,906 - Psest_0443 0.54 +1.6 484,019 + Psest_0443 0.75 +0.5 484,019 + Psest_0443 0.75 +0.8 484,019 + Psest_0443 0.75 +0.2 484,019 + Psest_0443 0.75 -0.4 484,019 + Psest_0443 0.75 -0.8 484,019 + Psest_0443 0.75 -1.0 484,019 + Psest_0443 0.75 -0.5 484,019 + Psest_0443 0.75 +0.9 484,020 - Psest_0443 0.75 +0.9 484,021 + Psest_0443 0.75 +0.1 484,021 + Psest_0443 0.75 +0.3 484,021 + Psest_0443 0.75 +1.3 484,021 + Psest_0443 0.75 +0.6 484,022 - Psest_0443 0.75 +2.3 484,029 + Psest_0443 0.77 +2.0 484,029 + Psest_0443 0.77 +1.6 484,029 + Psest_0443 0.77 +0.1 484,029 + Psest_0443 0.77 +0.7 484,029 + Psest_0443 0.77 +2.3 484,029 + Psest_0443 0.77 +2.2 484,029 + Psest_0443 0.77 +0.0 484,029 + Psest_0443 0.77 -0.0 484,029 + Psest_0443 0.77 -0.9 484,030 - Psest_0443 0.77 +0.7 484,059 + Psest_0443 0.82 -0.1 484,136 + -0.0 484,169 - +0.7 484,169 - +0.5 484,231 + +0.7 484,231 + -0.5 484,232 - +0.5 484,251 + -0.5 484,251 + -1.4 484,251 + +0.3 484,251 + -2.5 484,251 + -0.2 484,251 + +3.1 484,251 + -0.4 484,251 + +0.3 484,251 + -0.6 484,252 - +1.1 484,252 - -0.4 484,252 - +1.5 484,255 + -0.3 484,255 + -1.2 484,255 + -1.3 484,255 + -2.3 484,255 + -1.4 484,255 + -2.1 484,285 + -0.6 484,285 + -0.7 484,290 + +0.3 484,290 + +0.0 484,291 - -0.2 484,296 + +2.4 484,296 + +0.3 484,296 + -0.7 484,314 + +0.6 484,390 - Psest_0444 0.25 -0.3 484,441 + Psest_0444 0.37 -0.3 484,442 - Psest_0444 0.37 +2.1 484,471 + Psest_0444 0.44 +0.7 484,548 + Psest_0444 0.62 -0.1 484,549 - Psest_0444 0.63 -0.3 484,603 + Psest_0444 0.75 -0.6 484,603 + Psest_0444 0.75 +0.3 484,603 + Psest_0444 0.75 -1.4 484,603 + Psest_0444 0.75 -0.4 484,603 + Psest_0444 0.75 +0.7 484,603 + Psest_0444 0.75 -1.5 484,603 + Psest_0444 0.75 -1.8 484,604 - Psest_0444 0.76 +1.3 484,604 - Psest_0444 0.76 -0.8 484,618 - Psest_0444 0.79 +1.3 484,624 - Psest_0444 0.80 -0.0 484,738 + -0.3 484,738 + -0.7 484,739 - +0.9 484,739 - -0.3 484,739 - -0.5 484,743 + +0.7 484,744 - -1.5 484,760 + -0.9 484,761 - +0.3 484,761 - +1.1 484,888 + -0.4 484,888 + -1.3 484,889 - -1.0 485,036 + -0.5 485,093 - Psest_0445 0.10 -0.7
Or see this region's nucleotide sequence