Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4061 and Psest_4062 are separated by 13 nucleotides Psest_4062 and Psest_4063 are separated by 2 nucleotides Psest_4063 and Psest_4064 are separated by 106 nucleotides
Psest_4061: Psest_4061 - sulfate ABC transporter, permease protein CysT, at 4,232,970 to 4,233,785
_4061
Psest_4062: Psest_4062 - sulfate ABC transporter, permease protein CysW, at 4,233,799 to 4,234,674
_4062
Psest_4063: Psest_4063 - sulfate ABC transporter, ATP-binding protein, at 4,234,677 to 4,235,681
_4063
Psest_4064: Psest_4064 - Lactate dehydrogenase and related dehydrogenases, at 4,235,788 to 4,236,777
_4064
Position (kb)
4234
4235
4236 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4233.681 kb on + strand, within Psest_4061 at 4233.681 kb on + strand, within Psest_4061 at 4233.682 kb on - strand, within Psest_4061 at 4233.682 kb on - strand, within Psest_4061 at 4234.096 kb on + strand, within Psest_4062 at 4234.096 kb on + strand, within Psest_4062 at 4234.096 kb on + strand, within Psest_4062 at 4234.097 kb on - strand, within Psest_4062 at 4234.097 kb on - strand, within Psest_4062 at 4234.177 kb on + strand, within Psest_4062 at 4234.177 kb on + strand, within Psest_4062 at 4234.177 kb on + strand, within Psest_4062 at 4234.177 kb on + strand, within Psest_4062 at 4234.177 kb on + strand, within Psest_4062 at 4234.177 kb on + strand, within Psest_4062 at 4234.177 kb on + strand, within Psest_4062 at 4234.178 kb on - strand, within Psest_4062 at 4234.178 kb on - strand, within Psest_4062 at 4234.178 kb on - strand, within Psest_4062 at 4234.178 kb on - strand, within Psest_4062 at 4234.178 kb on - strand, within Psest_4062 at 4234.178 kb on - strand, within Psest_4062 at 4234.178 kb on - strand, within Psest_4062 at 4234.178 kb on - strand, within Psest_4062 at 4234.205 kb on - strand, within Psest_4062 at 4234.205 kb on - strand, within Psest_4062 at 4234.396 kb on - strand, within Psest_4062 at 4234.396 kb on - strand, within Psest_4062 at 4234.429 kb on + strand, within Psest_4062 at 4234.543 kb on + strand, within Psest_4062 at 4234.543 kb on + strand, within Psest_4062 at 4234.544 kb on - strand, within Psest_4062 at 4234.552 kb on + strand, within Psest_4062 at 4234.552 kb on + strand, within Psest_4062 at 4234.552 kb on + strand, within Psest_4062 at 4234.552 kb on + strand, within Psest_4062 at 4234.552 kb on + strand, within Psest_4062 at 4234.552 kb on + strand, within Psest_4062 at 4234.552 kb on + strand, within Psest_4062 at 4234.924 kb on - strand, within Psest_4063 at 4235.349 kb on + strand, within Psest_4063 at 4235.350 kb on - strand, within Psest_4063 at 4235.376 kb on + strand, within Psest_4063 at 4235.376 kb on + strand, within Psest_4063 at 4235.376 kb on + strand, within Psest_4063 at 4235.377 kb on - strand, within Psest_4063 at 4235.377 kb on - strand, within Psest_4063 at 4235.377 kb on - strand, within Psest_4063 at 4235.494 kb on + strand, within Psest_4063 at 4235.495 kb on - strand, within Psest_4063 at 4235.625 kb on + strand at 4235.625 kb on + strand at 4235.626 kb on - strand at 4235.626 kb on - strand at 4235.626 kb on - strand at 4235.651 kb on - strand at 4235.690 kb on + strand at 4235.690 kb on + strand at 4235.690 kb on + strand at 4235.690 kb on + strand at 4235.691 kb on - strand at 4235.691 kb on - strand at 4235.691 kb on - strand at 4235.691 kb on - strand at 4235.691 kb on - strand at 4235.723 kb on + strand at 4235.723 kb on + strand at 4235.723 kb on + strand at 4235.723 kb on + strand at 4235.723 kb on + strand at 4235.724 kb on - strand at 4235.724 kb on - strand at 4235.724 kb on - strand at 4235.724 kb on - strand at 4235.818 kb on + strand at 4236.157 kb on + strand, within Psest_4064 at 4236.157 kb on + strand, within Psest_4064 at 4236.157 kb on + strand, within Psest_4064 at 4236.349 kb on + strand, within Psest_4064 at 4236.349 kb on + strand, within Psest_4064 at 4236.566 kb on - strand, within Psest_4064 at 4236.566 kb on - strand, within Psest_4064 at 4236.566 kb on - strand, within Psest_4064
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,233,681 + Psest_4061 0.87 -0.4 4,233,681 + Psest_4061 0.87 -0.1 4,233,682 - Psest_4061 0.87 -1.0 4,233,682 - Psest_4061 0.87 +0.5 4,234,096 + Psest_4062 0.34 -0.9 4,234,096 + Psest_4062 0.34 +1.7 4,234,096 + Psest_4062 0.34 +1.6 4,234,097 - Psest_4062 0.34 +0.4 4,234,097 - Psest_4062 0.34 +0.1 4,234,177 + Psest_4062 0.43 +0.9 4,234,177 + Psest_4062 0.43 +2.5 4,234,177 + Psest_4062 0.43 +0.3 4,234,177 + Psest_4062 0.43 -1.8 4,234,177 + Psest_4062 0.43 +1.1 4,234,177 + Psest_4062 0.43 +1.3 4,234,177 + Psest_4062 0.43 -0.6 4,234,178 - Psest_4062 0.43 -0.6 4,234,178 - Psest_4062 0.43 +0.0 4,234,178 - Psest_4062 0.43 -1.1 4,234,178 - Psest_4062 0.43 +1.6 4,234,178 - Psest_4062 0.43 -1.0 4,234,178 - Psest_4062 0.43 -1.6 4,234,178 - Psest_4062 0.43 -2.1 4,234,178 - Psest_4062 0.43 +0.1 4,234,205 - Psest_4062 0.46 -0.5 4,234,205 - Psest_4062 0.46 +1.3 4,234,396 - Psest_4062 0.68 +0.2 4,234,396 - Psest_4062 0.68 -0.1 4,234,429 + Psest_4062 0.72 -1.9 4,234,543 + Psest_4062 0.85 -0.7 4,234,543 + Psest_4062 0.85 +2.1 4,234,544 - Psest_4062 0.85 -0.4 4,234,552 + Psest_4062 0.86 +0.0 4,234,552 + Psest_4062 0.86 +1.0 4,234,552 + Psest_4062 0.86 +1.3 4,234,552 + Psest_4062 0.86 -2.7 4,234,552 + Psest_4062 0.86 +0.2 4,234,552 + Psest_4062 0.86 -1.1 4,234,552 + Psest_4062 0.86 -0.7 4,234,924 - Psest_4063 0.25 -1.5 4,235,349 + Psest_4063 0.67 -0.7 4,235,350 - Psest_4063 0.67 -1.2 4,235,376 + Psest_4063 0.70 -0.5 4,235,376 + Psest_4063 0.70 +0.3 4,235,376 + Psest_4063 0.70 -0.0 4,235,377 - Psest_4063 0.70 +0.0 4,235,377 - Psest_4063 0.70 +1.1 4,235,377 - Psest_4063 0.70 +0.2 4,235,494 + Psest_4063 0.81 -0.7 4,235,495 - Psest_4063 0.81 +0.2 4,235,625 + +0.8 4,235,625 + -1.5 4,235,626 - -1.0 4,235,626 - +0.2 4,235,626 - +0.7 4,235,651 - -1.4 4,235,690 + +1.1 4,235,690 + +0.3 4,235,690 + -0.4 4,235,690 + +1.7 4,235,691 - -0.1 4,235,691 - -0.2 4,235,691 - -1.0 4,235,691 - +0.8 4,235,691 - +0.6 4,235,723 + +0.6 4,235,723 + -0.2 4,235,723 + +0.0 4,235,723 + -0.4 4,235,723 + -1.5 4,235,724 - +0.6 4,235,724 - -1.3 4,235,724 - +0.6 4,235,724 - +1.8 4,235,818 + -0.8 4,236,157 + Psest_4064 0.37 -0.7 4,236,157 + Psest_4064 0.37 -1.0 4,236,157 + Psest_4064 0.37 +0.0 4,236,349 + Psest_4064 0.57 +1.3 4,236,349 + Psest_4064 0.57 +1.8 4,236,566 - Psest_4064 0.79 -1.2 4,236,566 - Psest_4064 0.79 -1.0 4,236,566 - Psest_4064 0.79 +0.6
Or see this region's nucleotide sequence