Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3420

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,588,288	+		Psest_3418	0.52	-0.3
3,588,347	-		Psest_3418	0.58	+0.9
3,588,347	-		Psest_3418	0.58	+0.2
3,588,407	-		Psest_3418	0.64	-0.3
3,588,473	-		Psest_3418	0.71	+0.1
3,588,520	+		Psest_3418	0.76	-2.1
3,588,520	+		Psest_3418	0.76	-0.9
3,588,520	+		Psest_3418	0.76	-1.1
3,588,520	+		Psest_3418	0.76	-0.5
3,588,520	+		Psest_3418	0.76	-0.2
3,588,521	-		Psest_3418	0.76	-1.1
3,588,521	-		Psest_3418	0.76	-0.4
3,588,521	-		Psest_3418	0.76	+1.9
3,588,521	-		Psest_3418	0.76	-0.5
3,588,521	-		Psest_3418	0.76	-0.3
3,588,521	-		Psest_3418	0.76	+0.0
3,588,521	-		Psest_3418	0.76	-1.1
3,588,626	-		Psest_3418	0.87	-0.1
3,588,720	+				+0.4
3,588,720	+				-1.6
3,588,721	-				+0.3
3,588,721	-				-1.1
3,588,779	+				+0.2
3,588,807	+				-2.0
3,588,886	+				+0.7
3,588,887	-				+0.5
3,588,916	+				-0.3
3,589,037	+		Psest_3419	0.30	+1.6
3,589,037	+		Psest_3419	0.30	+0.4
3,589,037	+		Psest_3419	0.30	+1.2
3,589,037	+		Psest_3419	0.30	-1.7
3,589,037	+		Psest_3419	0.30	+1.8
3,589,037	+		Psest_3419	0.30	-1.1
3,589,037	+		Psest_3419	0.30	+1.1
3,589,037	+		Psest_3419	0.30	+2.1
3,589,037	+		Psest_3419	0.30	-2.7
3,589,038	-		Psest_3419	0.30	+3.0
3,589,038	-		Psest_3419	0.30	+0.5
3,589,038	-		Psest_3419	0.30	-0.6
3,589,038	-		Psest_3419	0.30	+2.2
3,589,038	-		Psest_3419	0.30	-0.1
3,589,038	-		Psest_3419	0.30	+0.5
3,589,038	-		Psest_3419	0.30	-1.3
3,589,041	+		Psest_3419	0.31	+0.1
3,589,041	+		Psest_3419	0.31	+0.0
3,589,041	+		Psest_3419	0.31	+0.1
3,589,041	+		Psest_3419	0.31	+1.3
3,589,041	+		Psest_3419	0.31	+0.9
3,589,042	-		Psest_3419	0.31	+0.9
3,589,042	-		Psest_3419	0.31	-0.4
3,589,042	-		Psest_3419	0.31	-1.3
3,589,042	-		Psest_3419	0.31	-0.1
3,589,128	-		Psest_3419	0.58	-0.4
3,589,128	-		Psest_3419	0.58	-1.0
3,589,194	-		Psest_3419	0.78	-0.4
3,589,228	+		Psest_3419	0.89	-0.9
3,589,228	+		Psest_3419	0.89	-0.6
3,589,229	-		Psest_3419	0.89	-0.8
3,589,229	-		Psest_3419	0.89	-1.6
3,589,239	+				-2.7
3,589,239	+				-0.3
3,589,239	+				-0.6
3,589,239	+				-0.2
3,589,239	+				+0.6
3,589,240	-				+1.7
3,589,240	-				+0.3
3,589,240	-				-0.6
3,589,240	-				+0.4
3,589,243	+				+0.4
3,589,243	+				+0.7
3,589,243	+				-0.6
3,589,243	+				+1.0
3,589,244	-				-1.1
3,589,262	+				+1.8
3,589,263	-				-1.2
3,589,263	-				+0.9
3,589,284	-				-0.9
3,589,375	-		Psest_3420	0.12	-0.9
3,589,407	+		Psest_3420	0.16	-1.4
3,589,407	+		Psest_3420	0.16	+0.3
3,589,408	-		Psest_3420	0.16	-0.8
3,589,408	-		Psest_3420	0.16	-0.7
3,589,434	-		Psest_3420	0.19	+0.3
3,589,505	+		Psest_3420	0.27	-1.2
3,589,505	+		Psest_3420	0.27	+0.6
3,589,506	-		Psest_3420	0.27	+1.0
3,589,506	-		Psest_3420	0.27	-0.6
3,589,506	-		Psest_3420	0.27	-0.5
3,589,506	-		Psest_3420	0.27	-1.9
3,589,506	-		Psest_3420	0.27	+0.0
3,589,507	+		Psest_3420	0.27	-2.0
3,589,507	+		Psest_3420	0.27	-1.5
3,589,507	+		Psest_3420	0.27	+0.1
3,589,507	+		Psest_3420	0.27	-0.5
3,589,508	-		Psest_3420	0.27	+0.6
3,589,508	-		Psest_3420	0.27	-1.7
3,589,508	-		Psest_3420	0.27	-1.6
3,589,508	-		Psest_3420	0.27	-0.3
3,589,508	-		Psest_3420	0.27	-0.2
3,589,508	-		Psest_3420	0.27	+0.4
3,589,508	-		Psest_3420	0.27	+1.3
3,589,537	-		Psest_3420	0.30	+1.3
3,589,570	+		Psest_3420	0.34	+0.3
3,589,570	+		Psest_3420	0.34	-1.0
3,589,570	+		Psest_3420	0.34	-0.4
3,589,570	+		Psest_3420	0.34	-0.6
3,589,570	+		Psest_3420	0.34	+1.2
3,589,571	-		Psest_3420	0.34	-1.0
3,589,571	-		Psest_3420	0.34	-1.3
3,589,571	-		Psest_3420	0.34	-0.1
3,589,571	-		Psest_3420	0.34	+0.5
3,589,571	-		Psest_3420	0.34	+0.2
3,589,664	+		Psest_3420	0.45	-0.0
3,589,664	+		Psest_3420	0.45	-0.8
3,589,665	-		Psest_3420	0.45	+0.3
3,589,665	-		Psest_3420	0.45	+0.2
3,589,736	+		Psest_3420	0.53	-0.8
3,589,736	+		Psest_3420	0.53	-0.3
3,589,737	-		Psest_3420	0.53	-0.6
3,589,737	-		Psest_3420	0.53	-1.6
3,589,737	-		Psest_3420	0.53	+0.7
3,589,737	-		Psest_3420	0.53	+0.7
3,589,759	+		Psest_3420	0.55	-1.0
3,589,760	-		Psest_3420	0.55	-2.3
3,589,826	+		Psest_3420	0.63	-0.9
3,589,827	-		Psest_3420	0.63	-2.9
3,589,827	-		Psest_3420	0.63	-1.3
3,589,827	-		Psest_3420	0.63	-1.0
3,589,956	+		Psest_3420	0.77	+0.3
3,589,957	-		Psest_3420	0.77	-1.6
3,590,056	+		Psest_3420	0.89	-0.5
3,590,062	+		Psest_3420	0.89	+0.2
3,590,062	+		Psest_3420	0.89	+0.8
3,590,062	+		Psest_3420	0.89	-0.2
3,590,062	+		Psest_3420	0.89	-0.5
3,590,063	-		Psest_3420	0.89	-0.8
3,590,063	-		Psest_3420	0.89	-3.0
3,590,063	-		Psest_3420	0.89	-1.5
3,590,063	-		Psest_3420	0.89	-0.9
3,590,063	-		Psest_3420	0.89	-1.2
3,590,114	-				+1.5
3,590,114	-				-0.0
3,590,236	+				+1.5
3,590,245	+				-2.2
3,590,245	+				+1.2
3,590,246	-				-1.6
3,590,246	-				+3.2
3,590,311	-				-0.1
3,590,311	-				-0.6
3,590,347	+				-1.6
3,590,392	+				-0.3
3,590,392	+				-0.9
3,590,392	+				+1.6
3,590,392	+				-0.0
3,590,392	+				-1.0
3,590,392	+				+0.8
3,590,392	+				-1.5
3,590,393	-				+0.4
3,590,393	-				+1.3
3,590,393	-				+1.3
3,590,416	+				+3.0
3,590,417	-				+0.5
3,590,475	-		Psest_3421	0.40	-0.1
3,590,482	+		Psest_3421	0.44	-0.9
3,590,482	+		Psest_3421	0.44	-1.1
3,590,483	-		Psest_3421	0.44	-0.5
3,590,483	-		Psest_3421	0.44	-1.9
3,590,483	-		Psest_3421	0.44	+1.1
3,590,509	+		Psest_3421	0.59	+0.2
3,590,510	-		Psest_3421	0.60	+2.6
3,590,669	+				+1.3
3,590,669	+				-0.3
3,590,669	+				-0.1
3,590,670	-				+0.7
3,590,689	+				+0.1
3,590,690	-				-1.3
3,590,690	-				-0.6
3,590,690	-				-0.1
3,590,693	+				-1.3
3,590,693	+				-0.8
3,590,694	-				+0.0
3,590,694	-				+1.8
3,590,706	-				-0.0
3,590,769	+				+0.8
3,590,769	+				-0.3
3,590,769	+				-0.5
3,590,770	-				+0.5
3,590,770	-				-0.0
3,590,865	-		Psest_3422	0.39	-0.4
3,590,905	-		Psest_3422	0.52	+0.1
3,590,922	-		Psest_3422	0.58	+0.6
3,590,922	-		Psest_3422	0.58	+0.6
3,590,922	-		Psest_3422	0.58	-0.7
3,590,922	-		Psest_3422	0.58	+0.7
3,590,946	-		Psest_3422	0.66	-1.0
3,591,007	-		Psest_3422	0.85	-0.1
3,591,049	+				-1.0
3,591,049	+				-0.9
3,591,049	+				+1.5
3,591,049	+				-0.1
3,591,049	+				-0.4
3,591,049	+				+0.1
3,591,076	+				+0.1
3,591,094	+				+0.3
3,591,094	+				+0.5
3,591,094	+				-0.3
3,591,094	+				-0.6
3,591,105	+				+0.0
3,591,105	+				+1.4
3,591,106	-				-0.8
3,591,106	-				+0.5
3,591,109	+				-0.0
3,591,109	+				-0.1
3,591,109	+				+0.4
3,591,109	+				-0.9
3,591,110	-				+0.4
3,591,110	-				+0.5
3,591,110	-				+0.0
3,591,110	-				-2.8
3,591,110	-				+0.2
3,591,111	+				+1.9
3,591,111	+				+0.5
3,591,111	+				+2.2
3,591,111	+				+0.7
3,591,111	+				+0.2
3,591,111	+				+0.6
3,591,112	-				+1.4
3,591,112	-				-0.0
3,591,112	-				+0.3