Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2735 and Psest_2736 are separated by 179 nucleotides Psest_2736 and Psest_2737 are separated by 141 nucleotides Psest_2737 and Psest_2738 are separated by 108 nucleotides
Psest_2735: Psest_2735 - hypothetical protein, at 2,925,977 to 2,926,651
_2735
Psest_2736: Psest_2736 - Transposase and inactivated derivatives, at 2,926,831 to 2,927,361
_2736
Psest_2737: Psest_2737 - Restriction endonuclease, at 2,927,503 to 2,928,399
_2737
Psest_2738: Psest_2738 - hypothetical protein, at 2,928,508 to 2,929,200
_2738
Position (kb)
2927
2928
2929 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2926.581 kb on + strand, within Psest_2735 at 2926.582 kb on - strand, within Psest_2735 at 2926.582 kb on - strand, within Psest_2735 at 2926.646 kb on - strand at 2926.870 kb on + strand at 2926.870 kb on + strand at 2927.109 kb on - strand, within Psest_2736 at 2927.213 kb on - strand, within Psest_2736 at 2927.213 kb on - strand, within Psest_2736 at 2927.213 kb on - strand, within Psest_2736 at 2927.313 kb on + strand at 2927.393 kb on - strand at 2927.713 kb on + strand, within Psest_2737 at 2927.714 kb on - strand, within Psest_2737 at 2927.714 kb on - strand, within Psest_2737 at 2927.714 kb on - strand, within Psest_2737 at 2927.714 kb on - strand, within Psest_2737 at 2927.735 kb on + strand, within Psest_2737 at 2927.953 kb on + strand, within Psest_2737 at 2927.954 kb on - strand, within Psest_2737 at 2927.954 kb on - strand, within Psest_2737 at 2927.954 kb on - strand, within Psest_2737 at 2927.954 kb on - strand, within Psest_2737 at 2927.957 kb on + strand, within Psest_2737 at 2927.957 kb on + strand, within Psest_2737 at 2927.957 kb on + strand, within Psest_2737 at 2927.958 kb on - strand, within Psest_2737 at 2927.958 kb on - strand, within Psest_2737 at 2927.958 kb on - strand, within Psest_2737 at 2927.958 kb on - strand, within Psest_2737 at 2927.958 kb on - strand, within Psest_2737 at 2928.002 kb on + strand, within Psest_2737 at 2928.003 kb on - strand, within Psest_2737 at 2928.003 kb on - strand, within Psest_2737 at 2928.003 kb on - strand, within Psest_2737 at 2928.024 kb on + strand, within Psest_2737 at 2928.024 kb on + strand, within Psest_2737 at 2928.337 kb on - strand at 2928.409 kb on + strand at 2928.409 kb on + strand at 2928.410 kb on - strand at 2928.455 kb on + strand at 2928.458 kb on + strand at 2928.458 kb on + strand at 2928.459 kb on - strand at 2928.459 kb on - strand at 2928.459 kb on - strand at 2928.526 kb on - strand at 2928.541 kb on + strand at 2928.541 kb on + strand at 2928.541 kb on + strand at 2928.541 kb on + strand at 2928.541 kb on + strand at 2928.541 kb on + strand at 2928.542 kb on - strand at 2928.542 kb on - strand at 2928.542 kb on - strand at 2928.542 kb on - strand at 2928.542 kb on - strand at 2928.542 kb on - strand at 2928.542 kb on - strand at 2928.542 kb on - strand at 2928.542 kb on - strand at 2928.542 kb on - strand at 2928.542 kb on - strand at 2928.542 kb on - strand at 2928.544 kb on + strand at 2928.727 kb on + strand, within Psest_2738 at 2928.727 kb on + strand, within Psest_2738 at 2928.728 kb on - strand, within Psest_2738 at 2928.728 kb on - strand, within Psest_2738 at 2928.728 kb on - strand, within Psest_2738 at 2928.728 kb on - strand, within Psest_2738 at 2928.728 kb on - strand, within Psest_2738 at 2928.728 kb on - strand, within Psest_2738 at 2928.728 kb on - strand, within Psest_2738 at 2928.728 kb on - strand, within Psest_2738 at 2928.770 kb on - strand, within Psest_2738 at 2928.792 kb on + strand, within Psest_2738 at 2928.792 kb on + strand, within Psest_2738 at 2928.793 kb on - strand, within Psest_2738 at 2928.795 kb on + strand, within Psest_2738 at 2928.811 kb on + strand, within Psest_2738 at 2928.835 kb on - strand, within Psest_2738 at 2928.880 kb on + strand, within Psest_2738 at 2929.065 kb on - strand, within Psest_2738 at 2929.105 kb on + strand, within Psest_2738 at 2929.105 kb on + strand, within Psest_2738 at 2929.122 kb on + strand, within Psest_2738 at 2929.123 kb on - strand, within Psest_2738 at 2929.175 kb on + strand at 2929.175 kb on + strand at 2929.195 kb on - strand at 2929.199 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,926,581 + Psest_2735 0.89 -1.8 2,926,582 - Psest_2735 0.90 +1.1 2,926,582 - Psest_2735 0.90 +1.8 2,926,646 - +1.7 2,926,870 + -0.5 2,926,870 + -3.9 2,927,109 - Psest_2736 0.52 -0.5 2,927,213 - Psest_2736 0.72 +0.3 2,927,213 - Psest_2736 0.72 -0.6 2,927,213 - Psest_2736 0.72 +0.3 2,927,313 + +1.6 2,927,393 - -0.4 2,927,713 + Psest_2737 0.23 -0.1 2,927,714 - Psest_2737 0.24 -3.1 2,927,714 - Psest_2737 0.24 +0.6 2,927,714 - Psest_2737 0.24 -0.9 2,927,714 - Psest_2737 0.24 +1.5 2,927,735 + Psest_2737 0.26 -0.5 2,927,953 + Psest_2737 0.50 -0.0 2,927,954 - Psest_2737 0.50 -0.8 2,927,954 - Psest_2737 0.50 -1.4 2,927,954 - Psest_2737 0.50 -1.4 2,927,954 - Psest_2737 0.50 -0.4 2,927,957 + Psest_2737 0.51 -0.7 2,927,957 + Psest_2737 0.51 +0.9 2,927,957 + Psest_2737 0.51 -0.2 2,927,958 - Psest_2737 0.51 -0.4 2,927,958 - Psest_2737 0.51 -1.7 2,927,958 - Psest_2737 0.51 +0.6 2,927,958 - Psest_2737 0.51 -1.0 2,927,958 - Psest_2737 0.51 +0.8 2,928,002 + Psest_2737 0.56 -0.5 2,928,003 - Psest_2737 0.56 -1.8 2,928,003 - Psest_2737 0.56 -0.7 2,928,003 - Psest_2737 0.56 -1.5 2,928,024 + Psest_2737 0.58 -0.1 2,928,024 + Psest_2737 0.58 +1.3 2,928,337 - -1.3 2,928,409 + -1.6 2,928,409 + -1.8 2,928,410 - +1.0 2,928,455 + +0.3 2,928,458 + +1.1 2,928,458 + -0.2 2,928,459 - -1.3 2,928,459 - +0.5 2,928,459 - -0.8 2,928,526 - -0.5 2,928,541 + +0.6 2,928,541 + -1.7 2,928,541 + +0.2 2,928,541 + +0.7 2,928,541 + -0.1 2,928,541 + -2.0 2,928,542 - +1.0 2,928,542 - +0.3 2,928,542 - -0.2 2,928,542 - +1.5 2,928,542 - +0.7 2,928,542 - +1.4 2,928,542 - +0.4 2,928,542 - +0.6 2,928,542 - +0.2 2,928,542 - -0.5 2,928,542 - +0.0 2,928,542 - +0.3 2,928,544 + +1.1 2,928,727 + Psest_2738 0.32 +1.2 2,928,727 + Psest_2738 0.32 +0.0 2,928,728 - Psest_2738 0.32 -0.0 2,928,728 - Psest_2738 0.32 -0.9 2,928,728 - Psest_2738 0.32 +0.1 2,928,728 - Psest_2738 0.32 -1.0 2,928,728 - Psest_2738 0.32 -2.7 2,928,728 - Psest_2738 0.32 +0.3 2,928,728 - Psest_2738 0.32 -1.0 2,928,728 - Psest_2738 0.32 +0.5 2,928,770 - Psest_2738 0.38 -1.8 2,928,792 + Psest_2738 0.41 -0.7 2,928,792 + Psest_2738 0.41 -2.3 2,928,793 - Psest_2738 0.41 -1.2 2,928,795 + Psest_2738 0.41 -1.0 2,928,811 + Psest_2738 0.44 +0.3 2,928,835 - Psest_2738 0.47 +2.7 2,928,880 + Psest_2738 0.54 +0.1 2,929,065 - Psest_2738 0.80 -0.1 2,929,105 + Psest_2738 0.86 +0.1 2,929,105 + Psest_2738 0.86 -2.0 2,929,122 + Psest_2738 0.89 -0.6 2,929,123 - Psest_2738 0.89 +1.0 2,929,175 + +1.0 2,929,175 + -0.5 2,929,195 - +2.1 2,929,199 - +0.3
Or see this region's nucleotide sequence