Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1871 and Psest_1872 are separated by 22 nucleotides Psest_1872 and Psest_1873 are separated by 3 nucleotides
Psest_1871: Psest_1871 - Predicted esterase of the alpha-beta hydrolase superfamily, at 1,981,183 to 1,983,414
_1871
Psest_1872: Psest_1872 - selT/selW/selH selenoprotein domain, at 1,983,437 to 1,983,718
_1872
Psest_1873: Psest_1873 - Predicted permease, DMT superfamily, at 1,983,722 to 1,984,600
_1873
Position (kb)
1983
1984 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1982.607 kb on + strand, within Psest_1871 at 1983.069 kb on + strand, within Psest_1871 at 1983.399 kb on + strand at 1983.400 kb on - strand at 1983.402 kb on + strand at 1983.402 kb on + strand at 1983.403 kb on - strand at 1983.404 kb on + strand at 1983.404 kb on + strand at 1983.404 kb on + strand at 1983.404 kb on + strand at 1983.405 kb on - strand at 1983.405 kb on - strand at 1983.470 kb on + strand, within Psest_1872 at 1983.471 kb on - strand, within Psest_1872 at 1983.471 kb on - strand, within Psest_1872 at 1983.471 kb on - strand, within Psest_1872 at 1983.556 kb on - strand, within Psest_1872 at 1983.556 kb on - strand, within Psest_1872 at 1983.589 kb on + strand, within Psest_1872 at 1983.884 kb on + strand, within Psest_1873 at 1983.884 kb on + strand, within Psest_1873 at 1983.885 kb on - strand, within Psest_1873 at 1983.885 kb on - strand, within Psest_1873 at 1983.885 kb on - strand, within Psest_1873 at 1983.885 kb on - strand, within Psest_1873 at 1984.329 kb on - strand, within Psest_1873 at 1984.701 kb on + strand at 1984.701 kb on + strand at 1984.701 kb on + strand at 1984.702 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,982,607 + Psest_1871 0.64 +0.4 1,983,069 + Psest_1871 0.84 +0.7 1,983,399 + +0.2 1,983,400 - -1.2 1,983,402 + +0.0 1,983,402 + -1.3 1,983,403 - -0.3 1,983,404 + +0.7 1,983,404 + +1.1 1,983,404 + +0.3 1,983,404 + +1.8 1,983,405 - -1.9 1,983,405 - +1.2 1,983,470 + Psest_1872 0.12 -2.1 1,983,471 - Psest_1872 0.12 -0.2 1,983,471 - Psest_1872 0.12 -1.3 1,983,471 - Psest_1872 0.12 -1.2 1,983,556 - Psest_1872 0.42 -1.5 1,983,556 - Psest_1872 0.42 +0.7 1,983,589 + Psest_1872 0.54 -1.3 1,983,884 + Psest_1873 0.18 -0.6 1,983,884 + Psest_1873 0.18 -0.8 1,983,885 - Psest_1873 0.19 -1.6 1,983,885 - Psest_1873 0.19 +0.3 1,983,885 - Psest_1873 0.19 +0.6 1,983,885 - Psest_1873 0.19 -0.4 1,984,329 - Psest_1873 0.69 +0.2 1,984,701 + -1.4 1,984,701 + -0.5 1,984,701 + -0.7 1,984,702 - -0.1
Or see this region's nucleotide sequence