Experiment: syringaldehyde 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0786 and Psest_0787 are separated by 363 nucleotides Psest_0787 and Psest_0788 overlap by 17 nucleotides Psest_0788 and Psest_0789 are separated by 216 nucleotides
Psest_0786: Psest_0786 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 859,374 to 860,399
_0786
Psest_0787: Psest_0787 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 860,763 to 861,761
_0787
Psest_0788: Psest_0788 - Uncharacterized conserved protein, at 861,745 to 862,164
_0788
Psest_0789: Psest_0789 - hypothetical protein, at 862,381 to 862,734
_0789
Position (kb) 860
861
862 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 859.821 kb on + strand, within Psest_0786 at 859.821 kb on + strand, within Psest_0786 at 859.821 kb on + strand, within Psest_0786 at 859.821 kb on + strand, within Psest_0786 at 859.821 kb on + strand, within Psest_0786 at 859.822 kb on - strand, within Psest_0786 at 859.822 kb on - strand, within Psest_0786 at 859.822 kb on - strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.105 kb on - strand, within Psest_0786 at 860.105 kb on - strand, within Psest_0786 at 860.105 kb on - strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.161 kb on + strand, within Psest_0786 at 860.161 kb on + strand, within Psest_0786 at 860.162 kb on - strand, within Psest_0786 at 860.268 kb on - strand, within Psest_0786 at 860.268 kb on - strand, within Psest_0786 at 860.562 kb on + strand at 860.566 kb on - strand at 860.766 kb on + strand at 860.766 kb on + strand at 860.766 kb on + strand at 860.766 kb on + strand at 860.766 kb on + strand at 860.766 kb on + strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.802 kb on + strand at 860.958 kb on + strand, within Psest_0787 at 861.057 kb on + strand, within Psest_0787 at 861.058 kb on - strand, within Psest_0787 at 861.058 kb on - strand, within Psest_0787 at 861.058 kb on - strand, within Psest_0787 at 861.058 kb on - strand, within Psest_0787 at 861.180 kb on + strand, within Psest_0787 at 861.352 kb on - strand, within Psest_0787 at 861.438 kb on + strand, within Psest_0787 at 861.438 kb on + strand, within Psest_0787 at 861.438 kb on + strand, within Psest_0787 at 861.439 kb on - strand, within Psest_0787 at 861.439 kb on - strand, within Psest_0787 at 861.439 kb on - strand, within Psest_0787 at 861.439 kb on - strand, within Psest_0787 at 861.439 kb on - strand, within Psest_0787 at 861.439 kb on - strand, within Psest_0787 at 861.439 kb on - strand, within Psest_0787 at 861.471 kb on + strand, within Psest_0787 at 861.471 kb on + strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.644 kb on + strand, within Psest_0787 at 861.644 kb on + strand, within Psest_0787 at 861.644 kb on + strand, within Psest_0787 at 861.644 kb on + strand, within Psest_0787 at 861.645 kb on - strand, within Psest_0787 at 861.645 kb on - strand, within Psest_0787 at 861.699 kb on + strand at 861.699 kb on + strand at 861.699 kb on + strand at 861.700 kb on - strand at 861.788 kb on + strand, within Psest_0788 at 861.788 kb on + strand, within Psest_0788 at 861.788 kb on + strand, within Psest_0788 at 861.788 kb on + strand, within Psest_0788 at 861.789 kb on - strand, within Psest_0788 at 861.789 kb on - strand, within Psest_0788 at 861.789 kb on - strand, within Psest_0788 at 861.789 kb on - strand, within Psest_0788 at 861.884 kb on + strand, within Psest_0788 at 861.884 kb on + strand, within Psest_0788 at 861.884 kb on + strand, within Psest_0788 at 861.884 kb on + strand, within Psest_0788 at 861.885 kb on - strand, within Psest_0788 at 861.885 kb on - strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 862.142 kb on + strand at 862.153 kb on - strand at 862.198 kb on + strand at 862.198 kb on + strand at 862.198 kb on + strand at 862.198 kb on + strand at 862.198 kb on + strand at 862.198 kb on + strand at 862.198 kb on + strand at 862.198 kb on + strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.220 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.230 kb on - strand at 862.230 kb on - strand at 862.247 kb on - strand at 862.248 kb on + strand at 862.249 kb on - strand at 862.337 kb on - strand at 862.431 kb on + strand, within Psest_0789 at 862.432 kb on - strand, within Psest_0789 at 862.432 kb on - strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.619 kb on - strand, within Psest_0789 at 862.625 kb on + strand, within Psest_0789 at 862.626 kb on - strand, within Psest_0789
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 4 mM remove 859,821 + Psest_0786 0.44 -1.5 859,821 + Psest_0786 0.44 -0.3 859,821 + Psest_0786 0.44 +1.0 859,821 + Psest_0786 0.44 -0.6 859,821 + Psest_0786 0.44 +1.0 859,822 - Psest_0786 0.44 -0.8 859,822 - Psest_0786 0.44 -1.2 859,822 - Psest_0786 0.44 -0.4 860,079 + Psest_0786 0.69 -0.6 860,079 + Psest_0786 0.69 +0.4 860,079 + Psest_0786 0.69 -1.0 860,079 + Psest_0786 0.69 +0.6 860,079 + Psest_0786 0.69 +0.8 860,079 + Psest_0786 0.69 -1.4 860,079 + Psest_0786 0.69 -0.6 860,079 + Psest_0786 0.69 +0.6 860,079 + Psest_0786 0.69 +0.3 860,079 + Psest_0786 0.69 +0.2 860,079 + Psest_0786 0.69 -1.5 860,079 + Psest_0786 0.69 -0.9 860,079 + Psest_0786 0.69 +0.4 860,079 + Psest_0786 0.69 +0.5 860,079 + Psest_0786 0.69 +2.2 860,079 + Psest_0786 0.69 -0.5 860,079 + Psest_0786 0.69 +0.8 860,079 + Psest_0786 0.69 +0.0 860,080 - Psest_0786 0.69 +0.1 860,080 - Psest_0786 0.69 +0.6 860,080 - Psest_0786 0.69 -1.3 860,080 - Psest_0786 0.69 +0.9 860,080 - Psest_0786 0.69 -1.4 860,080 - Psest_0786 0.69 +0.1 860,080 - Psest_0786 0.69 +0.3 860,080 - Psest_0786 0.69 +1.4 860,080 - Psest_0786 0.69 -1.5 860,080 - Psest_0786 0.69 +0.4 860,080 - Psest_0786 0.69 -1.0 860,080 - Psest_0786 0.69 +1.3 860,080 - Psest_0786 0.69 -0.8 860,080 - Psest_0786 0.69 +0.6 860,080 - Psest_0786 0.69 +0.9 860,080 - Psest_0786 0.69 -2.0 860,080 - Psest_0786 0.69 -0.5 860,080 - Psest_0786 0.69 +0.1 860,080 - Psest_0786 0.69 +0.3 860,080 - Psest_0786 0.69 -0.6 860,080 - Psest_0786 0.69 -0.9 860,080 - Psest_0786 0.69 -0.6 860,080 - Psest_0786 0.69 -0.3 860,080 - Psest_0786 0.69 -0.0 860,080 - Psest_0786 0.69 -0.6 860,105 - Psest_0786 0.71 +1.0 860,105 - Psest_0786 0.71 +0.1 860,105 - Psest_0786 0.71 -0.1 860,112 + Psest_0786 0.72 +0.1 860,112 + Psest_0786 0.72 -2.2 860,112 + Psest_0786 0.72 +2.2 860,112 + Psest_0786 0.72 -1.5 860,112 + Psest_0786 0.72 -0.7 860,112 + Psest_0786 0.72 -0.2 860,112 + Psest_0786 0.72 -1.8 860,112 + Psest_0786 0.72 +0.6 860,112 + Psest_0786 0.72 -1.3 860,112 + Psest_0786 0.72 +1.0 860,112 + Psest_0786 0.72 -0.1 860,112 + Psest_0786 0.72 -0.0 860,112 + Psest_0786 0.72 +1.6 860,112 + Psest_0786 0.72 -1.1 860,112 + Psest_0786 0.72 +2.3 860,112 + Psest_0786 0.72 -1.1 860,112 + Psest_0786 0.72 +0.2 860,112 + Psest_0786 0.72 +1.0 860,113 - Psest_0786 0.72 +0.2 860,113 - Psest_0786 0.72 -0.2 860,113 - Psest_0786 0.72 +0.4 860,113 - Psest_0786 0.72 +0.1 860,113 - Psest_0786 0.72 -1.0 860,113 - Psest_0786 0.72 -1.2 860,113 - Psest_0786 0.72 -0.2 860,113 - Psest_0786 0.72 -1.7 860,113 - Psest_0786 0.72 +0.8 860,113 - Psest_0786 0.72 -2.2 860,113 - Psest_0786 0.72 +1.0 860,113 - Psest_0786 0.72 +3.5 860,113 - Psest_0786 0.72 +1.1 860,113 - Psest_0786 0.72 -0.3 860,113 - Psest_0786 0.72 +0.4 860,113 - Psest_0786 0.72 +0.6 860,113 - Psest_0786 0.72 +2.0 860,113 - Psest_0786 0.72 +0.3 860,161 + Psest_0786 0.77 +1.1 860,161 + Psest_0786 0.77 -0.6 860,162 - Psest_0786 0.77 -1.7 860,268 - Psest_0786 0.87 +0.5 860,268 - Psest_0786 0.87 +0.7 860,562 + -0.2 860,566 - +0.8 860,766 + -0.3 860,766 + -0.0 860,766 + -3.7 860,766 + -0.5 860,766 + -0.6 860,766 + -0.6 860,767 - -0.1 860,767 - +0.5 860,767 - -0.3 860,767 - -0.4 860,767 - +0.4 860,767 - +0.6 860,767 - -1.0 860,767 - +1.2 860,767 - +3.0 860,767 - -0.2 860,802 + -1.6 860,958 + Psest_0787 0.20 +1.4 861,057 + Psest_0787 0.29 +1.1 861,058 - Psest_0787 0.30 +0.9 861,058 - Psest_0787 0.30 +0.6 861,058 - Psest_0787 0.30 -0.3 861,058 - Psest_0787 0.30 -0.3 861,180 + Psest_0787 0.42 +0.7 861,352 - Psest_0787 0.59 -0.7 861,438 + Psest_0787 0.68 -3.3 861,438 + Psest_0787 0.68 +1.2 861,438 + Psest_0787 0.68 -1.2 861,439 - Psest_0787 0.68 +0.6 861,439 - Psest_0787 0.68 +2.3 861,439 - Psest_0787 0.68 -0.4 861,439 - Psest_0787 0.68 -0.7 861,439 - Psest_0787 0.68 +0.6 861,439 - Psest_0787 0.68 +1.8 861,439 - Psest_0787 0.68 -1.3 861,471 + Psest_0787 0.71 +1.3 861,471 + Psest_0787 0.71 -0.4 861,472 - Psest_0787 0.71 +0.3 861,472 - Psest_0787 0.71 -0.3 861,472 - Psest_0787 0.71 +1.2 861,472 - Psest_0787 0.71 +1.3 861,472 - Psest_0787 0.71 -0.2 861,472 - Psest_0787 0.71 +0.1 861,472 - Psest_0787 0.71 -1.9 861,472 - Psest_0787 0.71 +0.3 861,472 - Psest_0787 0.71 +0.1 861,644 + Psest_0787 0.88 +2.2 861,644 + Psest_0787 0.88 +2.0 861,644 + Psest_0787 0.88 +0.6 861,644 + Psest_0787 0.88 +0.5 861,645 - Psest_0787 0.88 +1.5 861,645 - Psest_0787 0.88 +0.0 861,699 + +1.1 861,699 + -0.9 861,699 + +0.2 861,700 - -0.6 861,788 + Psest_0788 0.10 -0.9 861,788 + Psest_0788 0.10 -1.0 861,788 + Psest_0788 0.10 -0.5 861,788 + Psest_0788 0.10 +1.1 861,789 - Psest_0788 0.10 -1.1 861,789 - Psest_0788 0.10 -1.5 861,789 - Psest_0788 0.10 -1.6 861,789 - Psest_0788 0.10 +1.7 861,884 + Psest_0788 0.33 -0.1 861,884 + Psest_0788 0.33 -1.0 861,884 + Psest_0788 0.33 +0.2 861,884 + Psest_0788 0.33 +0.3 861,885 - Psest_0788 0.33 -0.6 861,885 - Psest_0788 0.33 -0.8 861,886 + Psest_0788 0.34 +0.1 861,886 + Psest_0788 0.34 +1.4 861,886 + Psest_0788 0.34 +1.8 861,886 + Psest_0788 0.34 +0.1 861,886 + Psest_0788 0.34 -0.5 861,886 + Psest_0788 0.34 +1.0 861,886 + Psest_0788 0.34 +0.2 861,886 + Psest_0788 0.34 +1.5 861,886 + Psest_0788 0.34 -0.8 861,886 + Psest_0788 0.34 +1.2 861,887 - Psest_0788 0.34 -0.7 861,887 - Psest_0788 0.34 +0.0 861,887 - Psest_0788 0.34 +0.7 861,887 - Psest_0788 0.34 -0.6 861,887 - Psest_0788 0.34 +1.2 861,887 - Psest_0788 0.34 +1.1 861,887 - Psest_0788 0.34 +0.1 861,887 - Psest_0788 0.34 +1.1 861,887 - Psest_0788 0.34 +0.9 861,887 - Psest_0788 0.34 -1.3 861,887 - Psest_0788 0.34 -0.5 861,887 - Psest_0788 0.34 -0.8 861,887 - Psest_0788 0.34 +1.1 862,142 + +0.8 862,153 - +0.8 862,198 + -1.3 862,198 + -0.6 862,198 + -1.1 862,198 + +1.6 862,198 + +0.8 862,198 + +2.0 862,198 + +1.3 862,198 + +1.3 862,199 - -0.1 862,199 - -0.3 862,199 - +2.7 862,199 - +1.6 862,199 - -0.1 862,199 - -0.1 862,199 - -0.1 862,199 - +0.2 862,199 - +0.7 862,199 - +1.0 862,199 - -1.3 862,220 + -1.7 862,227 + -0.1 862,227 + -0.5 862,227 + +0.9 862,227 + -0.2 862,227 + -0.5 862,227 + +0.8 862,227 + +1.4 862,227 + +0.1 862,227 + -2.0 862,227 + +0.8 862,227 + -0.7 862,227 + -1.5 862,227 + -1.4 862,227 + -3.0 862,227 + +1.5 862,227 + -2.2 862,227 + -1.0 862,227 + -0.3 862,228 - +0.5 862,228 - +0.6 862,228 - -1.0 862,228 - +1.7 862,228 - +2.3 862,228 - -2.2 862,228 - -0.7 862,228 - -0.7 862,228 - -0.4 862,228 - -2.2 862,230 - +0.9 862,230 - +0.4 862,247 - -1.8 862,248 + +1.8 862,249 - -1.0 862,337 - +0.6 862,431 + Psest_0789 0.14 -0.4 862,432 - Psest_0789 0.14 -1.4 862,432 - Psest_0789 0.14 -0.1 862,618 + Psest_0789 0.67 -0.9 862,618 + Psest_0789 0.67 +1.9 862,618 + Psest_0789 0.67 +1.1 862,618 + Psest_0789 0.67 +1.3 862,618 + Psest_0789 0.67 -0.1 862,618 + Psest_0789 0.67 +1.1 862,619 - Psest_0789 0.67 +0.9 862,625 + Psest_0789 0.69 -0.5 862,626 - Psest_0789 0.69 -2.9
Or see this region's nucleotide sequence