Experiment: syringaldehyde 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0052 and Psest_0053 are separated by 167 nucleotides Psest_0053 and Psest_0054 are separated by 86 nucleotides Psest_0054 and Psest_0055 are separated by 211 nucleotides
Psest_0052: Psest_0052 - hypothetical protein, at 54,527 to 55,279
_0052
Psest_0053: Psest_0053 - hypothetical protein, at 55,447 to 55,950
_0053
Psest_0054: Psest_0054 - hypothetical protein, at 56,037 to 56,429
_0054
Psest_0055: Psest_0055 - hypothetical protein, at 56,641 to 57,462
_0055
Position (kb) 56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 55.065 kb on + strand, within Psest_0052 at 55.065 kb on + strand, within Psest_0052 at 55.066 kb on - strand, within Psest_0052 at 55.066 kb on - strand, within Psest_0052 at 55.168 kb on - strand, within Psest_0052 at 55.199 kb on + strand, within Psest_0052 at 55.200 kb on - strand, within Psest_0052 at 55.200 kb on - strand, within Psest_0052 at 55.264 kb on - strand at 55.306 kb on + strand at 55.313 kb on - strand at 55.313 kb on - strand at 55.421 kb on - strand at 55.424 kb on - strand at 55.424 kb on - strand at 55.424 kb on - strand at 55.834 kb on + strand, within Psest_0053 at 56.182 kb on + strand, within Psest_0054 at 56.183 kb on - strand, within Psest_0054 at 56.183 kb on - strand, within Psest_0054 at 56.200 kb on + strand, within Psest_0054 at 56.201 kb on - strand, within Psest_0054 at 56.248 kb on + strand, within Psest_0054 at 56.249 kb on - strand, within Psest_0054 at 56.249 kb on - strand, within Psest_0054 at 56.423 kb on + strand at 56.424 kb on - strand at 56.424 kb on - strand at 56.424 kb on - strand at 56.482 kb on + strand at 56.482 kb on + strand at 56.483 kb on - strand at 56.546 kb on + strand at 56.546 kb on + strand at 56.547 kb on - strand at 56.667 kb on + strand at 56.668 kb on - strand at 56.668 kb on - strand at 56.864 kb on + strand, within Psest_0055 at 56.865 kb on - strand, within Psest_0055 at 56.865 kb on - strand, within Psest_0055 at 56.865 kb on - strand, within Psest_0055 at 57.088 kb on + strand, within Psest_0055 at 57.088 kb on + strand, within Psest_0055 at 57.088 kb on + strand, within Psest_0055 at 57.088 kb on + strand, within Psest_0055 at 57.088 kb on + strand, within Psest_0055 at 57.088 kb on + strand, within Psest_0055 at 57.088 kb on + strand, within Psest_0055 at 57.089 kb on - strand, within Psest_0055 at 57.089 kb on - strand, within Psest_0055 at 57.107 kb on + strand, within Psest_0055 at 57.107 kb on + strand, within Psest_0055 at 57.107 kb on + strand, within Psest_0055 at 57.108 kb on - strand, within Psest_0055 at 57.108 kb on - strand, within Psest_0055 at 57.108 kb on - strand, within Psest_0055 at 57.108 kb on - strand, within Psest_0055 at 57.209 kb on + strand, within Psest_0055 at 57.210 kb on - strand, within Psest_0055 at 57.285 kb on + strand, within Psest_0055 at 57.285 kb on + strand, within Psest_0055 at 57.317 kb on + strand, within Psest_0055 at 57.318 kb on - strand, within Psest_0055 at 57.318 kb on - strand, within Psest_0055 at 57.329 kb on + strand, within Psest_0055
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 4 mM remove 55,065 + Psest_0052 0.71 +0.7 55,065 + Psest_0052 0.71 -0.9 55,066 - Psest_0052 0.72 +1.8 55,066 - Psest_0052 0.72 -2.1 55,168 - Psest_0052 0.85 +0.7 55,199 + Psest_0052 0.89 -1.8 55,200 - Psest_0052 0.89 -1.4 55,200 - Psest_0052 0.89 -0.2 55,264 - -0.2 55,306 + +0.4 55,313 - -2.5 55,313 - -0.5 55,421 - +0.2 55,424 - -1.1 55,424 - -0.1 55,424 - +1.0 55,834 + Psest_0053 0.77 +0.8 56,182 + Psest_0054 0.37 +0.3 56,183 - Psest_0054 0.37 +1.4 56,183 - Psest_0054 0.37 +1.4 56,200 + Psest_0054 0.41 +1.4 56,201 - Psest_0054 0.42 -1.7 56,248 + Psest_0054 0.54 +0.2 56,249 - Psest_0054 0.54 +2.2 56,249 - Psest_0054 0.54 -0.1 56,423 + -0.2 56,424 - -0.3 56,424 - +1.9 56,424 - +0.4 56,482 + -0.2 56,482 + -1.8 56,483 - -2.3 56,546 + -0.2 56,546 + +0.7 56,547 - +2.9 56,667 + +1.7 56,668 - -0.5 56,668 - -2.1 56,864 + Psest_0055 0.27 -2.4 56,865 - Psest_0055 0.27 -0.5 56,865 - Psest_0055 0.27 +0.6 56,865 - Psest_0055 0.27 -0.1 57,088 + Psest_0055 0.54 -1.5 57,088 + Psest_0055 0.54 -1.2 57,088 + Psest_0055 0.54 +1.7 57,088 + Psest_0055 0.54 +2.5 57,088 + Psest_0055 0.54 -1.6 57,088 + Psest_0055 0.54 +0.2 57,088 + Psest_0055 0.54 +0.1 57,089 - Psest_0055 0.55 -0.2 57,089 - Psest_0055 0.55 -0.4 57,107 + Psest_0055 0.57 +0.0 57,107 + Psest_0055 0.57 +0.6 57,107 + Psest_0055 0.57 +0.1 57,108 - Psest_0055 0.57 +0.2 57,108 - Psest_0055 0.57 +0.9 57,108 - Psest_0055 0.57 +2.1 57,108 - Psest_0055 0.57 +0.1 57,209 + Psest_0055 0.69 -0.1 57,210 - Psest_0055 0.69 +1.0 57,285 + Psest_0055 0.78 -2.6 57,285 + Psest_0055 0.78 +0.3 57,317 + Psest_0055 0.82 +0.8 57,318 - Psest_0055 0.82 +2.4 57,318 - Psest_0055 0.82 -2.8 57,329 + Psest_0055 0.84 -1.8
Or see this region's nucleotide sequence