Experiment: syringaldehyde 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0273 and Psest_0274 are separated by 133 nucleotides Psest_0274 and Psest_0275 overlap by 4 nucleotides Psest_0275 and Psest_0276 are separated by 9 nucleotides
Psest_0273: Psest_0273 - arginine/ornithine antiporter, at 289,492 to 290,919
_0273
Psest_0274: Psest_0274 - hypothetical protein, at 291,053 to 291,466
_0274
Psest_0275: Psest_0275 - Protein of unknown function (DUF3392)., at 291,463 to 291,786
_0275
Psest_0276: Psest_0276 - putative oxygen-independent coproporphyrinogen III oxidase, at 291,796 to 292,929
_0276
Position (kb) 291
292 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 290.577 kb on - strand, within Psest_0273 at 290.577 kb on - strand, within Psest_0273 at 290.606 kb on + strand, within Psest_0273 at 290.607 kb on - strand, within Psest_0273 at 290.607 kb on - strand, within Psest_0273 at 290.607 kb on - strand, within Psest_0273 at 290.607 kb on - strand, within Psest_0273 at 290.664 kb on + strand, within Psest_0273 at 290.664 kb on + strand, within Psest_0273 at 290.665 kb on - strand, within Psest_0273 at 290.666 kb on + strand, within Psest_0273 at 290.666 kb on + strand, within Psest_0273 at 290.667 kb on - strand, within Psest_0273 at 290.667 kb on - strand, within Psest_0273 at 290.667 kb on - strand, within Psest_0273 at 290.667 kb on - strand, within Psest_0273 at 290.667 kb on - strand, within Psest_0273 at 290.667 kb on - strand, within Psest_0273 at 290.667 kb on - strand, within Psest_0273 at 290.667 kb on - strand, within Psest_0273 at 290.667 kb on - strand, within Psest_0273 at 290.667 kb on - strand, within Psest_0273 at 290.697 kb on - strand, within Psest_0273 at 290.891 kb on - strand at 290.891 kb on - strand at 290.891 kb on - strand at 290.891 kb on - strand at 290.891 kb on - strand at 290.924 kb on - strand at 290.955 kb on + strand at 290.955 kb on + strand at 290.979 kb on + strand at 290.980 kb on - strand at 290.980 kb on - strand at 291.023 kb on + strand at 291.024 kb on - strand at 291.123 kb on + strand, within Psest_0274 at 291.123 kb on + strand, within Psest_0274 at 291.123 kb on + strand, within Psest_0274 at 291.123 kb on + strand, within Psest_0274 at 291.124 kb on - strand, within Psest_0274 at 291.124 kb on - strand, within Psest_0274 at 291.124 kb on - strand, within Psest_0274 at 291.212 kb on + strand, within Psest_0274 at 291.212 kb on + strand, within Psest_0274 at 291.212 kb on + strand, within Psest_0274 at 291.213 kb on - strand, within Psest_0274 at 291.222 kb on + strand, within Psest_0274 at 291.243 kb on + strand, within Psest_0274 at 291.243 kb on + strand, within Psest_0274 at 291.243 kb on + strand, within Psest_0274 at 291.244 kb on - strand, within Psest_0274 at 291.244 kb on - strand, within Psest_0274 at 291.244 kb on - strand, within Psest_0274 at 291.246 kb on + strand, within Psest_0274 at 291.246 kb on + strand, within Psest_0274 at 291.246 kb on + strand, within Psest_0274 at 291.246 kb on + strand, within Psest_0274 at 291.246 kb on + strand, within Psest_0274 at 291.247 kb on - strand, within Psest_0274 at 291.247 kb on - strand, within Psest_0274 at 291.247 kb on - strand, within Psest_0274 at 291.247 kb on - strand, within Psest_0274 at 291.247 kb on - strand, within Psest_0274 at 291.247 kb on - strand, within Psest_0274 at 291.247 kb on - strand, within Psest_0274 at 291.247 kb on - strand, within Psest_0274 at 291.247 kb on - strand, within Psest_0274 at 291.249 kb on + strand, within Psest_0274 at 291.250 kb on - strand, within Psest_0274 at 291.250 kb on - strand, within Psest_0274 at 291.464 kb on + strand at 291.464 kb on + strand at 291.465 kb on - strand at 291.527 kb on + strand, within Psest_0275 at 291.527 kb on + strand, within Psest_0275 at 291.527 kb on + strand, within Psest_0275 at 291.527 kb on + strand, within Psest_0275 at 291.528 kb on - strand, within Psest_0275 at 291.528 kb on - strand, within Psest_0275 at 291.528 kb on - strand, within Psest_0275 at 291.528 kb on - strand, within Psest_0275 at 291.528 kb on - strand, within Psest_0275 at 291.723 kb on + strand, within Psest_0275 at 291.775 kb on + strand at 291.797 kb on + strand at 292.067 kb on + strand, within Psest_0276 at 292.106 kb on + strand, within Psest_0276 at 292.107 kb on - strand, within Psest_0276 at 292.107 kb on - strand, within Psest_0276 at 292.176 kb on - strand, within Psest_0276 at 292.176 kb on - strand, within Psest_0276 at 292.229 kb on + strand, within Psest_0276 at 292.230 kb on - strand, within Psest_0276 at 292.598 kb on + strand, within Psest_0276
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 4 mM remove 290,577 - Psest_0273 0.76 -0.5 290,577 - Psest_0273 0.76 +0.0 290,606 + Psest_0273 0.78 -0.6 290,607 - Psest_0273 0.78 +1.5 290,607 - Psest_0273 0.78 -0.1 290,607 - Psest_0273 0.78 -1.6 290,607 - Psest_0273 0.78 +1.5 290,664 + Psest_0273 0.82 +0.3 290,664 + Psest_0273 0.82 -0.1 290,665 - Psest_0273 0.82 +0.8 290,666 + Psest_0273 0.82 -0.2 290,666 + Psest_0273 0.82 -0.6 290,667 - Psest_0273 0.82 +1.4 290,667 - Psest_0273 0.82 +1.0 290,667 - Psest_0273 0.82 -1.4 290,667 - Psest_0273 0.82 +1.4 290,667 - Psest_0273 0.82 -0.3 290,667 - Psest_0273 0.82 +0.9 290,667 - Psest_0273 0.82 +1.5 290,667 - Psest_0273 0.82 -0.2 290,667 - Psest_0273 0.82 -0.1 290,667 - Psest_0273 0.82 +0.3 290,697 - Psest_0273 0.84 +0.8 290,891 - -0.1 290,891 - +0.1 290,891 - +1.2 290,891 - +1.4 290,891 - +0.1 290,924 - +0.7 290,955 + -0.8 290,955 + -0.2 290,979 + +0.9 290,980 - -0.4 290,980 - -1.4 291,023 + -0.1 291,024 - -1.4 291,123 + Psest_0274 0.17 +0.6 291,123 + Psest_0274 0.17 +0.7 291,123 + Psest_0274 0.17 -0.6 291,123 + Psest_0274 0.17 -0.2 291,124 - Psest_0274 0.17 +0.9 291,124 - Psest_0274 0.17 -0.0 291,124 - Psest_0274 0.17 -2.0 291,212 + Psest_0274 0.38 +0.4 291,212 + Psest_0274 0.38 +0.8 291,212 + Psest_0274 0.38 +0.5 291,213 - Psest_0274 0.39 +1.3 291,222 + Psest_0274 0.41 -0.6 291,243 + Psest_0274 0.46 +0.4 291,243 + Psest_0274 0.46 -2.0 291,243 + Psest_0274 0.46 -0.5 291,244 - Psest_0274 0.46 +0.4 291,244 - Psest_0274 0.46 +1.0 291,244 - Psest_0274 0.46 +1.8 291,246 + Psest_0274 0.47 -0.1 291,246 + Psest_0274 0.47 +0.4 291,246 + Psest_0274 0.47 +2.3 291,246 + Psest_0274 0.47 -1.1 291,246 + Psest_0274 0.47 -1.0 291,247 - Psest_0274 0.47 +0.6 291,247 - Psest_0274 0.47 +0.4 291,247 - Psest_0274 0.47 +2.0 291,247 - Psest_0274 0.47 +1.3 291,247 - Psest_0274 0.47 +0.0 291,247 - Psest_0274 0.47 +1.4 291,247 - Psest_0274 0.47 -1.7 291,247 - Psest_0274 0.47 -1.7 291,247 - Psest_0274 0.47 -0.1 291,249 + Psest_0274 0.47 -0.2 291,250 - Psest_0274 0.48 -0.9 291,250 - Psest_0274 0.48 -2.0 291,464 + +0.4 291,464 + -0.6 291,465 - +0.3 291,527 + Psest_0275 0.20 -3.0 291,527 + Psest_0275 0.20 +1.8 291,527 + Psest_0275 0.20 +0.6 291,527 + Psest_0275 0.20 -2.3 291,528 - Psest_0275 0.20 -0.3 291,528 - Psest_0275 0.20 -0.8 291,528 - Psest_0275 0.20 -0.4 291,528 - Psest_0275 0.20 -1.8 291,528 - Psest_0275 0.20 -0.3 291,723 + Psest_0275 0.80 -1.1 291,775 + +0.2 291,797 + +0.3 292,067 + Psest_0276 0.24 -1.1 292,106 + Psest_0276 0.27 +0.4 292,107 - Psest_0276 0.27 -0.5 292,107 - Psest_0276 0.27 +2.0 292,176 - Psest_0276 0.34 +2.1 292,176 - Psest_0276 0.34 +0.6 292,229 + Psest_0276 0.38 +1.2 292,230 - Psest_0276 0.38 -1.2 292,598 + Psest_0276 0.71 -2.5
Or see this region's nucleotide sequence