Experiment: syringaldehyde 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0236 and Psest_0237 are separated by 102 nucleotides Psest_0237 and Psest_0238 are separated by 129 nucleotides
Psest_0236: Psest_0236 - Predicted SAM-dependent methyltransferases, at 246,797 to 247,993
_0236
Psest_0237: Psest_0237 - intracellular protease, PfpI family, at 248,096 to 248,635
_0237
Psest_0238: Psest_0238 - Predicted signal transduction protein, at 248,765 to 249,631
_0238
Position (kb) 248
249 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 247.287 kb on - strand, within Psest_0236 at 247.305 kb on + strand, within Psest_0236 at 247.305 kb on + strand, within Psest_0236 at 247.306 kb on - strand, within Psest_0236 at 247.306 kb on - strand, within Psest_0236 at 247.306 kb on - strand, within Psest_0236 at 247.306 kb on - strand, within Psest_0236 at 247.306 kb on - strand, within Psest_0236 at 247.341 kb on + strand, within Psest_0236 at 247.341 kb on + strand, within Psest_0236 at 247.341 kb on + strand, within Psest_0236 at 247.341 kb on + strand, within Psest_0236 at 247.342 kb on - strand, within Psest_0236 at 247.342 kb on - strand, within Psest_0236 at 247.342 kb on - strand, within Psest_0236 at 247.377 kb on + strand, within Psest_0236 at 247.377 kb on + strand, within Psest_0236 at 247.377 kb on + strand, within Psest_0236 at 247.378 kb on - strand, within Psest_0236 at 247.483 kb on - strand, within Psest_0236 at 247.483 kb on - strand, within Psest_0236 at 247.532 kb on + strand, within Psest_0236 at 247.532 kb on + strand, within Psest_0236 at 247.556 kb on + strand, within Psest_0236 at 247.556 kb on + strand, within Psest_0236 at 247.557 kb on - strand, within Psest_0236 at 247.557 kb on - strand, within Psest_0236 at 247.674 kb on + strand, within Psest_0236 at 247.674 kb on + strand, within Psest_0236 at 247.924 kb on - strand at 247.924 kb on - strand at 247.924 kb on - strand at 248.026 kb on - strand at 248.419 kb on - strand, within Psest_0237 at 248.453 kb on + strand, within Psest_0237 at 248.454 kb on - strand, within Psest_0237 at 248.600 kb on + strand at 248.601 kb on - strand at 249.176 kb on + strand, within Psest_0238 at 249.176 kb on + strand, within Psest_0238 at 249.176 kb on + strand, within Psest_0238 at 249.176 kb on + strand, within Psest_0238 at 249.176 kb on + strand, within Psest_0238 at 249.176 kb on + strand, within Psest_0238 at 249.176 kb on + strand, within Psest_0238 at 249.176 kb on + strand, within Psest_0238 at 249.177 kb on - strand, within Psest_0238 at 249.177 kb on - strand, within Psest_0238 at 249.177 kb on - strand, within Psest_0238 at 249.177 kb on - strand, within Psest_0238 at 249.177 kb on - strand, within Psest_0238 at 249.177 kb on - strand, within Psest_0238 at 249.177 kb on - strand, within Psest_0238 at 249.177 kb on - strand, within Psest_0238 at 249.177 kb on - strand, within Psest_0238 at 249.177 kb on - strand, within Psest_0238 at 249.196 kb on + strand, within Psest_0238 at 249.197 kb on - strand, within Psest_0238 at 249.260 kb on + strand, within Psest_0238 at 249.261 kb on - strand, within Psest_0238 at 249.261 kb on - strand, within Psest_0238 at 249.338 kb on + strand, within Psest_0238 at 249.338 kb on + strand, within Psest_0238 at 249.339 kb on - strand, within Psest_0238 at 249.339 kb on - strand, within Psest_0238 at 249.339 kb on - strand, within Psest_0238 at 249.563 kb on + strand at 249.563 kb on + strand at 249.563 kb on + strand at 249.564 kb on - strand at 249.564 kb on - strand at 249.581 kb on + strand at 249.581 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 4 mM remove 247,287 - Psest_0236 0.41 -0.4 247,305 + Psest_0236 0.42 -1.5 247,305 + Psest_0236 0.42 -0.0 247,306 - Psest_0236 0.43 -0.6 247,306 - Psest_0236 0.43 -0.0 247,306 - Psest_0236 0.43 -1.9 247,306 - Psest_0236 0.43 -0.6 247,306 - Psest_0236 0.43 -0.9 247,341 + Psest_0236 0.45 +0.7 247,341 + Psest_0236 0.45 +0.8 247,341 + Psest_0236 0.45 +1.3 247,341 + Psest_0236 0.45 -1.0 247,342 - Psest_0236 0.46 -2.1 247,342 - Psest_0236 0.46 +0.5 247,342 - Psest_0236 0.46 +0.8 247,377 + Psest_0236 0.48 +1.1 247,377 + Psest_0236 0.48 +1.7 247,377 + Psest_0236 0.48 +1.0 247,378 - Psest_0236 0.49 -0.0 247,483 - Psest_0236 0.57 -0.9 247,483 - Psest_0236 0.57 -0.0 247,532 + Psest_0236 0.61 -3.0 247,532 + Psest_0236 0.61 +0.4 247,556 + Psest_0236 0.63 -0.5 247,556 + Psest_0236 0.63 -1.7 247,557 - Psest_0236 0.63 -1.6 247,557 - Psest_0236 0.63 +0.2 247,674 + Psest_0236 0.73 +0.9 247,674 + Psest_0236 0.73 +1.2 247,924 - -0.5 247,924 - +0.0 247,924 - +0.7 248,026 - -0.4 248,419 - Psest_0237 0.60 -1.4 248,453 + Psest_0237 0.66 -1.1 248,454 - Psest_0237 0.66 +0.4 248,600 + -0.1 248,601 - -0.2 249,176 + Psest_0238 0.47 -0.4 249,176 + Psest_0238 0.47 +0.6 249,176 + Psest_0238 0.47 -0.3 249,176 + Psest_0238 0.47 +1.5 249,176 + Psest_0238 0.47 -1.3 249,176 + Psest_0238 0.47 -0.6 249,176 + Psest_0238 0.47 +0.4 249,176 + Psest_0238 0.47 +1.0 249,177 - Psest_0238 0.48 -1.4 249,177 - Psest_0238 0.48 +1.6 249,177 - Psest_0238 0.48 +0.6 249,177 - Psest_0238 0.48 -1.6 249,177 - Psest_0238 0.48 +0.2 249,177 - Psest_0238 0.48 +0.4 249,177 - Psest_0238 0.48 +0.5 249,177 - Psest_0238 0.48 -0.3 249,177 - Psest_0238 0.48 +0.9 249,177 - Psest_0238 0.48 +0.6 249,196 + Psest_0238 0.50 +1.0 249,197 - Psest_0238 0.50 -0.5 249,260 + Psest_0238 0.57 -1.7 249,261 - Psest_0238 0.57 -1.0 249,261 - Psest_0238 0.57 -0.0 249,338 + Psest_0238 0.66 -1.8 249,338 + Psest_0238 0.66 -0.1 249,339 - Psest_0238 0.66 +0.4 249,339 - Psest_0238 0.66 -1.6 249,339 - Psest_0238 0.66 +1.2 249,563 + +1.5 249,563 + +1.7 249,563 + -0.7 249,564 - -0.2 249,564 - +0.2 249,581 + +1.0 249,581 + +0.6
Or see this region's nucleotide sequence