Experiment: syringaldehyde 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0821 and Psest_0822 are separated by 1 nucleotides Psest_0822 and Psest_0823 overlap by 4 nucleotides Psest_0823 and Psest_0824 overlap by 8 nucleotides Psest_0824 and Psest_0825 overlap by 26 nucleotides
Psest_0821: Psest_0821 - Cytochrome D1 heme domain., at 894,264 to 895,439
_0821
Psest_0822: Psest_0822 - Transcriptional regulators, at 895,441 to 895,899
_0822
Psest_0823: Psest_0823 - Transcriptional regulators, at 895,896 to 896,408
_0823
Psest_0824: Psest_0824 - Transcriptional regulators, at 896,401 to 896,844
_0824
Psest_0825: Psest_0825 - transcriptional regulator, AsnC family, at 896,819 to 897,325
_0825
Position (kb) 895
896
897 Strain fitness (log2 ratio) -2
-1
0
1
2 at 895.002 kb on + strand, within Psest_0821 at 895.002 kb on + strand, within Psest_0821 at 895.210 kb on + strand, within Psest_0821 at 895.211 kb on - strand, within Psest_0821 at 895.211 kb on - strand, within Psest_0821 at 895.353 kb on + strand at 895.354 kb on - strand at 895.447 kb on - strand at 895.726 kb on + strand, within Psest_0822 at 895.726 kb on + strand, within Psest_0822 at 895.726 kb on + strand, within Psest_0822 at 895.726 kb on + strand, within Psest_0822 at 895.726 kb on + strand, within Psest_0822 at 895.726 kb on + strand, within Psest_0822 at 895.727 kb on - strand, within Psest_0822 at 895.744 kb on + strand, within Psest_0822 at 895.745 kb on - strand, within Psest_0822 at 896.155 kb on + strand, within Psest_0823 at 896.156 kb on - strand, within Psest_0823 at 896.196 kb on + strand, within Psest_0823 at 896.197 kb on - strand, within Psest_0823 at 896.229 kb on + strand, within Psest_0823 at 896.229 kb on + strand, within Psest_0823 at 896.230 kb on - strand, within Psest_0823 at 896.230 kb on - strand, within Psest_0823 at 897.159 kb on - strand, within Psest_0825
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 3 mM remove 895,002 + Psest_0821 0.63 -0.5 895,002 + Psest_0821 0.63 +0.6 895,210 + Psest_0821 0.80 +0.6 895,211 - Psest_0821 0.81 -2.3 895,211 - Psest_0821 0.81 +0.5 895,353 + +0.3 895,354 - -0.0 895,447 - +1.6 895,726 + Psest_0822 0.62 -0.0 895,726 + Psest_0822 0.62 -0.2 895,726 + Psest_0822 0.62 -0.4 895,726 + Psest_0822 0.62 +0.2 895,726 + Psest_0822 0.62 +1.8 895,726 + Psest_0822 0.62 -0.1 895,727 - Psest_0822 0.62 -0.3 895,744 + Psest_0822 0.66 +0.0 895,745 - Psest_0822 0.66 -1.3 896,155 + Psest_0823 0.50 +0.4 896,156 - Psest_0823 0.51 +0.4 896,196 + Psest_0823 0.58 +0.2 896,197 - Psest_0823 0.59 -2.0 896,229 + Psest_0823 0.65 -1.3 896,229 + Psest_0823 0.65 -2.2 896,230 - Psest_0823 0.65 -2.2 896,230 - Psest_0823 0.65 -1.5 897,159 - Psest_0825 0.67 +1.0
Or see this region's nucleotide sequence