Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0716

Experiment: syringaldehyde 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0715 and Psest_0716 are separated by 53 nucleotidesPsest_0716 and Psest_0717 are separated by 121 nucleotides Psest_0715: Psest_0715 - NADH dehydrogenase, FAD-containing subunit, at 783,470 to 784,765 _0715 Psest_0716: Psest_0716 - Protein of unknown function (DUF3094)., at 784,819 to 784,992 _0716 Psest_0717: Psest_0717 - Protein of unknown function (DUF1631)., at 785,114 to 787,372 _0717 Position (kb) 784 785Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 784.046 kb on + strand, within Psest_0715at 784.116 kb on - strand, within Psest_0715at 784.179 kb on + strand, within Psest_0715at 784.300 kb on + strand, within Psest_0715at 784.300 kb on + strand, within Psest_0715at 784.300 kb on + strand, within Psest_0715at 784.300 kb on + strand, within Psest_0715at 784.300 kb on + strand, within Psest_0715at 784.300 kb on + strand, within Psest_0715at 784.300 kb on + strand, within Psest_0715at 784.300 kb on + strand, within Psest_0715at 784.300 kb on + strand, within Psest_0715at 784.300 kb on + strand, within Psest_0715at 784.301 kb on - strand, within Psest_0715at 784.301 kb on - strand, within Psest_0715at 784.301 kb on - strand, within Psest_0715at 784.301 kb on - strand, within Psest_0715at 784.301 kb on - strand, within Psest_0715at 784.301 kb on - strand, within Psest_0715at 784.301 kb on - strand, within Psest_0715at 784.301 kb on - strand, within Psest_0715at 784.301 kb on - strand, within Psest_0715at 784.301 kb on - strand, within Psest_0715at 784.301 kb on - strand, within Psest_0715at 784.301 kb on - strand, within Psest_0715at 784.302 kb on + strand, within Psest_0715at 784.302 kb on + strand, within Psest_0715at 784.302 kb on + strand, within Psest_0715at 784.302 kb on + strand, within Psest_0715at 784.302 kb on + strand, within Psest_0715at 784.302 kb on + strand, within Psest_0715at 784.302 kb on + strand, within Psest_0715at 784.302 kb on + strand, within Psest_0715at 784.303 kb on - strand, within Psest_0715at 784.303 kb on - strand, within Psest_0715at 784.431 kb on + strand, within Psest_0715at 784.431 kb on + strand, within Psest_0715at 784.431 kb on + strand, within Psest_0715at 784.432 kb on - strand, within Psest_0715at 784.432 kb on - strand, within Psest_0715at 784.432 kb on - strand, within Psest_0715at 784.432 kb on - strand, within Psest_0715at 784.432 kb on - strand, within Psest_0715at 784.432 kb on - strand, within Psest_0715at 784.432 kb on - strand, within Psest_0715at 784.572 kb on + strand, within Psest_0715at 784.572 kb on + strand, within Psest_0715at 784.572 kb on + strand, within Psest_0715at 784.572 kb on + strand, within Psest_0715at 784.572 kb on + strand, within Psest_0715at 784.573 kb on - strand, within Psest_0715at 784.573 kb on - strand, within Psest_0715at 784.573 kb on - strand, within Psest_0715at 784.573 kb on - strand, within Psest_0715at 784.573 kb on - strand, within Psest_0715at 784.573 kb on - strand, within Psest_0715at 784.573 kb on - strand, within Psest_0715at 784.573 kb on - strand, within Psest_0715at 784.573 kb on - strand, within Psest_0715at 784.573 kb on - strand, within Psest_0715at 784.573 kb on - strand, within Psest_0715at 784.573 kb on - strand, within Psest_0715at 784.573 kb on - strand, within Psest_0715at 784.573 kb on - strand, within Psest_0715at 784.749 kb on - strandat 784.778 kb on + strandat 784.778 kb on + strandat 784.778 kb on + strandat 784.778 kb on + strandat 784.778 kb on + strandat 784.779 kb on - strandat 784.779 kb on - strandat 784.779 kb on - strandat 784.779 kb on - strandat 784.946 kb on + strand, within Psest_0716at 784.946 kb on + strand, within Psest_0716at 784.947 kb on - strand, within Psest_0716at 784.947 kb on - strand, within Psest_0716at 784.992 kb on + strandat 785.021 kb on + strandat 785.021 kb on + strandat 785.021 kb on + strandat 785.021 kb on + strandat 785.021 kb on + strandat 785.022 kb on - strandat 785.022 kb on - strandat 785.022 kb on - strandat 785.022 kb on - strandat 785.022 kb on - strandat 785.022 kb on - strandat 785.022 kb on - strandat 785.025 kb on + strandat 785.026 kb on - strandat 785.026 kb on - strandat 785.277 kb on + strandat 785.277 kb on + strandat 785.277 kb on + strandat 785.277 kb on + strandat 785.277 kb on + strandat 785.277 kb on + strandat 785.277 kb on + strandat 785.277 kb on + strandat 785.277 kb on + strandat 785.277 kb on + strandat 785.277 kb on + strandat 785.277 kb on + strandat 785.277 kb on + strandat 785.278 kb on - strandat 785.278 kb on - strandat 785.278 kb on - strandat 785.278 kb on - strandat 785.278 kb on - strandat 785.717 kb on + strand, within Psest_0717at 785.737 kb on + strand, within Psest_0717at 785.737 kb on + strand, within Psest_0717at 785.737 kb on + strand, within Psest_0717at 785.738 kb on - strand, within Psest_0717at 785.738 kb on - strand, within Psest_0717at 785.738 kb on - strand, within Psest_0717at 785.738 kb on - strand, within Psest_0717at 785.738 kb on - strand, within Psest_0717at 785.738 kb on - strand, within Psest_0717at 785.738 kb on - strand, within Psest_0717at 785.738 kb on - strand, within Psest_0717at 785.738 kb on - strand, within Psest_0717at 785.738 kb on - strand, within Psest_0717at 785.738 kb on - strand, within Psest_0717at 785.738 kb on - strand, within Psest_0717

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 3 mM
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784,046 + Psest_0715 0.44 -0.2
784,116 - Psest_0715 0.50 -1.3
784,179 + Psest_0715 0.55 +0.3
784,300 + Psest_0715 0.64 +0.2
784,300 + Psest_0715 0.64 -1.2
784,300 + Psest_0715 0.64 +0.0
784,300 + Psest_0715 0.64 +0.2
784,300 + Psest_0715 0.64 -0.6
784,300 + Psest_0715 0.64 +0.7
784,300 + Psest_0715 0.64 -0.2
784,300 + Psest_0715 0.64 +0.2
784,300 + Psest_0715 0.64 +0.7
784,300 + Psest_0715 0.64 +0.9
784,301 - Psest_0715 0.64 -0.4
784,301 - Psest_0715 0.64 +0.3
784,301 - Psest_0715 0.64 -0.7
784,301 - Psest_0715 0.64 +0.7
784,301 - Psest_0715 0.64 +0.1
784,301 - Psest_0715 0.64 -2.1
784,301 - Psest_0715 0.64 +0.2
784,301 - Psest_0715 0.64 +0.7
784,301 - Psest_0715 0.64 -1.3
784,301 - Psest_0715 0.64 -0.7
784,301 - Psest_0715 0.64 +1.3
784,301 - Psest_0715 0.64 +2.6
784,302 + Psest_0715 0.64 -0.8
784,302 + Psest_0715 0.64 -0.9
784,302 + Psest_0715 0.64 +0.7
784,302 + Psest_0715 0.64 -0.4
784,302 + Psest_0715 0.64 -2.5
784,302 + Psest_0715 0.64 +1.6
784,302 + Psest_0715 0.64 +0.9
784,302 + Psest_0715 0.64 +0.4
784,303 - Psest_0715 0.64 +1.4
784,303 - Psest_0715 0.64 +0.4
784,431 + Psest_0715 0.74 -0.5
784,431 + Psest_0715 0.74 -0.4
784,431 + Psest_0715 0.74 +0.9
784,432 - Psest_0715 0.74 +0.3
784,432 - Psest_0715 0.74 -1.8
784,432 - Psest_0715 0.74 +0.9
784,432 - Psest_0715 0.74 -0.8
784,432 - Psest_0715 0.74 -0.2
784,432 - Psest_0715 0.74 +0.4
784,432 - Psest_0715 0.74 +1.5
784,572 + Psest_0715 0.85 -1.0
784,572 + Psest_0715 0.85 -0.6
784,572 + Psest_0715 0.85 -0.3
784,572 + Psest_0715 0.85 +0.1
784,572 + Psest_0715 0.85 -0.4
784,573 - Psest_0715 0.85 +1.1
784,573 - Psest_0715 0.85 -1.4
784,573 - Psest_0715 0.85 +2.0
784,573 - Psest_0715 0.85 +1.1
784,573 - Psest_0715 0.85 +0.8
784,573 - Psest_0715 0.85 -0.8
784,573 - Psest_0715 0.85 -0.7
784,573 - Psest_0715 0.85 -0.1
784,573 - Psest_0715 0.85 -1.3
784,573 - Psest_0715 0.85 -0.4
784,573 - Psest_0715 0.85 -0.4
784,573 - Psest_0715 0.85 +0.5
784,573 - Psest_0715 0.85 -3.4
784,573 - Psest_0715 0.85 -2.2
784,749 - -1.7
784,778 + +0.4
784,778 + -0.0
784,778 + -1.2
784,778 + +0.6
784,778 + +0.2
784,779 - -0.1
784,779 - -1.7
784,779 - +0.0
784,779 - -0.8
784,946 + Psest_0716 0.73 -0.7
784,946 + Psest_0716 0.73 -1.4
784,947 - Psest_0716 0.74 +0.4
784,947 - Psest_0716 0.74 -0.8
784,992 + +1.5
785,021 + -0.6
785,021 + -2.6
785,021 + -1.2
785,021 + -0.4
785,021 + -0.1
785,022 - +1.6
785,022 - -0.9
785,022 - +0.0
785,022 - -2.0
785,022 - +0.4
785,022 - +0.9
785,022 - -1.4
785,025 + -0.4
785,026 - +0.5
785,026 - -0.6
785,277 + -0.8
785,277 + -3.0
785,277 + -0.5
785,277 + +0.4
785,277 + -0.7
785,277 + -1.6
785,277 + +0.7
785,277 + +0.3
785,277 + +0.1
785,277 + -0.4
785,277 + -0.4
785,277 + -0.4
785,277 + -1.0
785,278 - -0.1
785,278 - -0.8
785,278 - -1.7
785,278 - +0.3
785,278 - -0.4
785,717 + Psest_0717 0.27 +0.2
785,737 + Psest_0717 0.28 -0.4
785,737 + Psest_0717 0.28 -1.4
785,737 + Psest_0717 0.28 +1.2
785,738 - Psest_0717 0.28 -0.3
785,738 - Psest_0717 0.28 +0.7
785,738 - Psest_0717 0.28 -0.1
785,738 - Psest_0717 0.28 +0.0
785,738 - Psest_0717 0.28 -2.3
785,738 - Psest_0717 0.28 -1.3
785,738 - Psest_0717 0.28 -1.0
785,738 - Psest_0717 0.28 +0.6
785,738 - Psest_0717 0.28 -1.6
785,738 - Psest_0717 0.28 +0.7
785,738 - Psest_0717 0.28 -0.1
785,738 - Psest_0717 0.28 -1.0

Or see this region's nucleotide sequence