Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0595

Experiment: syringaldehyde 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0592 and Psest_0593 are separated by 23 nucleotidesPsest_0593 and Psest_0594 are separated by 32 nucleotidesPsest_0594 and Psest_0595 are separated by 142 nucleotidesPsest_0595 and Psest_0596 overlap by 4 nucleotides Psest_0592: Psest_0592 - hypothetical protein, at 643,575 to 643,805 _0592 Psest_0593: Psest_0593 - Protein of unknown function (DUF2933)., at 643,829 to 644,086 _0593 Psest_0594: Psest_0594 - hypothetical protein, at 644,119 to 644,436 _0594 Psest_0595: Psest_0595 - Uncharacterized conserved protein, at 644,579 to 644,935 _0595 Psest_0596: Psest_0596 - heavy metal efflux pump (cobalt-zinc-cadmium), at 644,932 to 648,096 _0596 Position (kb) 644 645Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 643.682 kb on + strand, within Psest_0592at 643.733 kb on + strand, within Psest_0592at 643.733 kb on + strand, within Psest_0592at 643.734 kb on - strand, within Psest_0592at 643.809 kb on - strandat 643.809 kb on - strandat 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.916 kb on + strand, within Psest_0593at 644.005 kb on - strand, within Psest_0593at 644.076 kb on - strandat 644.088 kb on + strandat 644.088 kb on + strandat 644.089 kb on - strandat 644.093 kb on - strandat 644.106 kb on + strandat 644.107 kb on - strandat 644.107 kb on - strandat 644.164 kb on - strand, within Psest_0594at 644.201 kb on + strand, within Psest_0594at 644.202 kb on - strand, within Psest_0594at 644.221 kb on - strand, within Psest_0594at 644.221 kb on - strand, within Psest_0594at 644.226 kb on + strand, within Psest_0594at 644.226 kb on + strand, within Psest_0594at 644.226 kb on + strand, within Psest_0594at 644.228 kb on + strand, within Psest_0594at 644.228 kb on + strand, within Psest_0594at 644.307 kb on + strand, within Psest_0594at 644.307 kb on + strand, within Psest_0594at 644.339 kb on - strand, within Psest_0594at 644.339 kb on - strand, within Psest_0594at 644.352 kb on + strand, within Psest_0594at 644.352 kb on + strand, within Psest_0594at 644.403 kb on + strand, within Psest_0594at 644.455 kb on - strandat 644.467 kb on + strandat 644.467 kb on + strandat 644.468 kb on - strandat 644.484 kb on - strandat 644.487 kb on + strandat 644.487 kb on + strandat 644.488 kb on - strandat 644.488 kb on - strandat 644.488 kb on - strandat 644.488 kb on - strandat 644.488 kb on - strandat 644.510 kb on - strandat 644.580 kb on + strandat 644.615 kb on - strand, within Psest_0595at 644.765 kb on + strand, within Psest_0595at 644.766 kb on - strand, within Psest_0595at 644.766 kb on - strand, within Psest_0595at 644.779 kb on + strand, within Psest_0595at 644.883 kb on + strand, within Psest_0595at 644.883 kb on + strand, within Psest_0595at 644.883 kb on + strand, within Psest_0595at 644.884 kb on - strand, within Psest_0595at 644.926 kb on + strandat 644.926 kb on + strandat 644.927 kb on - strandat 644.974 kb on - strandat 644.974 kb on - strandat 645.005 kb on + strandat 645.005 kb on + strandat 645.006 kb on - strandat 645.145 kb on + strandat 645.205 kb on + strandat 645.206 kb on - strandat 645.260 kb on + strand, within Psest_0596at 645.260 kb on + strand, within Psest_0596at 645.260 kb on + strand, within Psest_0596at 645.260 kb on + strand, within Psest_0596at 645.261 kb on - strand, within Psest_0596at 645.261 kb on - strand, within Psest_0596at 645.261 kb on - strand, within Psest_0596at 645.261 kb on - strand, within Psest_0596at 645.261 kb on - strand, within Psest_0596at 645.261 kb on - strand, within Psest_0596at 645.261 kb on - strand, within Psest_0596at 645.270 kb on + strand, within Psest_0596at 645.270 kb on + strand, within Psest_0596at 645.271 kb on - strand, within Psest_0596at 645.271 kb on - strand, within Psest_0596at 645.271 kb on - strand, within Psest_0596at 645.341 kb on + strand, within Psest_0596at 645.353 kb on + strand, within Psest_0596at 645.354 kb on - strand, within Psest_0596at 645.354 kb on - strand, within Psest_0596at 645.437 kb on + strand, within Psest_0596at 645.437 kb on + strand, within Psest_0596at 645.438 kb on - strand, within Psest_0596at 645.527 kb on + strand, within Psest_0596at 645.527 kb on + strand, within Psest_0596at 645.527 kb on + strand, within Psest_0596at 645.528 kb on - strand, within Psest_0596at 645.626 kb on + strand, within Psest_0596at 645.627 kb on - strand, within Psest_0596at 645.627 kb on - strand, within Psest_0596at 645.660 kb on + strand, within Psest_0596at 645.660 kb on + strand, within Psest_0596at 645.660 kb on + strand, within Psest_0596at 645.660 kb on + strand, within Psest_0596at 645.660 kb on + strand, within Psest_0596at 645.660 kb on + strand, within Psest_0596at 645.660 kb on + strand, within Psest_0596at 645.661 kb on - strand, within Psest_0596at 645.661 kb on - strand, within Psest_0596at 645.661 kb on - strand, within Psest_0596at 645.661 kb on - strand, within Psest_0596at 645.661 kb on - strand, within Psest_0596at 645.661 kb on - strand, within Psest_0596at 645.661 kb on - strand, within Psest_0596at 645.661 kb on - strand, within Psest_0596at 645.688 kb on + strand, within Psest_0596at 645.689 kb on - strand, within Psest_0596at 645.689 kb on - strand, within Psest_0596at 645.734 kb on + strand, within Psest_0596at 645.734 kb on + strand, within Psest_0596at 645.735 kb on - strand, within Psest_0596at 645.735 kb on - strand, within Psest_0596at 645.735 kb on - strand, within Psest_0596at 645.735 kb on - strand, within Psest_0596at 645.742 kb on + strand, within Psest_0596at 645.743 kb on - strand, within Psest_0596at 645.931 kb on - strand, within Psest_0596at 645.931 kb on - strand, within Psest_0596at 645.931 kb on - strand, within Psest_0596at 645.931 kb on - strand, within Psest_0596at 645.931 kb on - strand, within Psest_0596at 645.932 kb on + strand, within Psest_0596at 645.933 kb on - strand, within Psest_0596at 645.933 kb on - strand, within Psest_0596at 645.933 kb on - strand, within Psest_0596at 645.933 kb on - strand, within Psest_0596at 645.933 kb on - strand, within Psest_0596at 645.933 kb on - strand, within Psest_0596at 645.933 kb on - strand, within Psest_0596at 645.933 kb on - strand, within Psest_0596at 645.933 kb on - strand, within Psest_0596at 645.933 kb on - strand, within Psest_0596at 645.933 kb on - strand, within Psest_0596at 645.933 kb on - strand, within Psest_0596at 645.933 kb on - strand, within Psest_0596at 645.933 kb on - strand, within Psest_0596

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 3 mM
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643,682 + Psest_0592 0.46 +0.0
643,733 + Psest_0592 0.68 -1.5
643,733 + Psest_0592 0.68 -0.6
643,734 - Psest_0592 0.69 -0.9
643,809 - +0.1
643,809 - -0.6
643,903 + Psest_0593 0.29 +2.0
643,903 + Psest_0593 0.29 -0.5
643,903 + Psest_0593 0.29 +1.0
643,903 + Psest_0593 0.29 -0.0
643,903 + Psest_0593 0.29 +0.4
643,903 + Psest_0593 0.29 -1.5
643,903 + Psest_0593 0.29 +0.3
643,903 + Psest_0593 0.29 -1.4
643,903 + Psest_0593 0.29 -0.5
643,903 + Psest_0593 0.29 +0.4
643,903 + Psest_0593 0.29 -0.9
643,904 - Psest_0593 0.29 -0.1
643,904 - Psest_0593 0.29 +1.1
643,904 - Psest_0593 0.29 +0.8
643,904 - Psest_0593 0.29 +0.9
643,904 - Psest_0593 0.29 -1.0
643,904 - Psest_0593 0.29 -1.0
643,904 - Psest_0593 0.29 -0.3
643,904 - Psest_0593 0.29 +0.1
643,904 - Psest_0593 0.29 +0.0
643,904 - Psest_0593 0.29 -1.4
643,916 + Psest_0593 0.34 -0.8
644,005 - Psest_0593 0.68 -1.1
644,076 - -0.3
644,088 + +0.8
644,088 + -1.1
644,089 - -0.5
644,093 - -1.7
644,106 + -2.2
644,107 - -0.7
644,107 - +0.6
644,164 - Psest_0594 0.14 -1.2
644,201 + Psest_0594 0.26 +0.2
644,202 - Psest_0594 0.26 -1.1
644,221 - Psest_0594 0.32 -1.0
644,221 - Psest_0594 0.32 +0.4
644,226 + Psest_0594 0.34 -1.3
644,226 + Psest_0594 0.34 -1.3
644,226 + Psest_0594 0.34 -0.3
644,228 + Psest_0594 0.34 +2.2
644,228 + Psest_0594 0.34 +1.2
644,307 + Psest_0594 0.59 -1.6
644,307 + Psest_0594 0.59 -1.1
644,339 - Psest_0594 0.69 +0.6
644,339 - Psest_0594 0.69 -1.5
644,352 + Psest_0594 0.73 +0.8
644,352 + Psest_0594 0.73 -0.3
644,403 + Psest_0594 0.89 -0.9
644,455 - -3.5
644,467 + -0.4
644,467 + -1.9
644,468 - +0.4
644,484 - -0.3
644,487 + -0.8
644,487 + +0.7
644,488 - +0.1
644,488 - -1.3
644,488 - -0.5
644,488 - -0.5
644,488 - +0.9
644,510 - +2.5
644,580 + -1.1
644,615 - Psest_0595 0.10 -0.6
644,765 + Psest_0595 0.52 -1.1
644,766 - Psest_0595 0.52 +0.7
644,766 - Psest_0595 0.52 -0.8
644,779 + Psest_0595 0.56 -0.1
644,883 + Psest_0595 0.85 -0.2
644,883 + Psest_0595 0.85 +2.0
644,883 + Psest_0595 0.85 +0.2
644,884 - Psest_0595 0.85 -1.8
644,926 + +0.1
644,926 + -1.1
644,927 - +0.7
644,974 - -1.4
644,974 - -1.4
645,005 + -1.3
645,005 + -2.0
645,006 - -1.3
645,145 + +1.1
645,205 + +0.6
645,206 - +0.1
645,260 + Psest_0596 0.10 +0.9
645,260 + Psest_0596 0.10 -0.4
645,260 + Psest_0596 0.10 +0.2
645,260 + Psest_0596 0.10 -0.7
645,261 - Psest_0596 0.10 -0.1
645,261 - Psest_0596 0.10 -2.1
645,261 - Psest_0596 0.10 +0.3
645,261 - Psest_0596 0.10 +2.8
645,261 - Psest_0596 0.10 +0.9
645,261 - Psest_0596 0.10 -1.3
645,261 - Psest_0596 0.10 -0.1
645,270 + Psest_0596 0.11 +2.3
645,270 + Psest_0596 0.11 -1.5
645,271 - Psest_0596 0.11 +0.5
645,271 - Psest_0596 0.11 -1.6
645,271 - Psest_0596 0.11 +0.9
645,341 + Psest_0596 0.13 +0.1
645,353 + Psest_0596 0.13 +0.3
645,354 - Psest_0596 0.13 -0.1
645,354 - Psest_0596 0.13 -1.8
645,437 + Psest_0596 0.16 -1.2
645,437 + Psest_0596 0.16 -0.1
645,438 - Psest_0596 0.16 -1.6
645,527 + Psest_0596 0.19 -0.9
645,527 + Psest_0596 0.19 -0.6
645,527 + Psest_0596 0.19 +0.0
645,528 - Psest_0596 0.19 -1.6
645,626 + Psest_0596 0.22 +0.3
645,627 - Psest_0596 0.22 +0.3
645,627 - Psest_0596 0.22 +0.0
645,660 + Psest_0596 0.23 +0.3
645,660 + Psest_0596 0.23 +1.4
645,660 + Psest_0596 0.23 -1.1
645,660 + Psest_0596 0.23 +0.1
645,660 + Psest_0596 0.23 -0.6
645,660 + Psest_0596 0.23 +0.3
645,660 + Psest_0596 0.23 +0.4
645,661 - Psest_0596 0.23 -0.4
645,661 - Psest_0596 0.23 +0.2
645,661 - Psest_0596 0.23 +1.7
645,661 - Psest_0596 0.23 -0.3
645,661 - Psest_0596 0.23 -0.9
645,661 - Psest_0596 0.23 +0.8
645,661 - Psest_0596 0.23 +2.9
645,661 - Psest_0596 0.23 -0.1
645,688 + Psest_0596 0.24 +0.6
645,689 - Psest_0596 0.24 -2.3
645,689 - Psest_0596 0.24 +0.8
645,734 + Psest_0596 0.25 -0.7
645,734 + Psest_0596 0.25 +1.6
645,735 - Psest_0596 0.25 +0.9
645,735 - Psest_0596 0.25 -0.4
645,735 - Psest_0596 0.25 -1.6
645,735 - Psest_0596 0.25 -0.4
645,742 + Psest_0596 0.26 +1.0
645,743 - Psest_0596 0.26 -0.8
645,931 - Psest_0596 0.32 +1.3
645,931 - Psest_0596 0.32 +0.2
645,931 - Psest_0596 0.32 +0.5
645,931 - Psest_0596 0.32 -2.3
645,931 - Psest_0596 0.32 +0.6
645,932 + Psest_0596 0.32 -1.1
645,933 - Psest_0596 0.32 -0.4
645,933 - Psest_0596 0.32 +0.0
645,933 - Psest_0596 0.32 +0.4
645,933 - Psest_0596 0.32 +0.4
645,933 - Psest_0596 0.32 -0.2
645,933 - Psest_0596 0.32 +0.4
645,933 - Psest_0596 0.32 +1.6
645,933 - Psest_0596 0.32 +0.5
645,933 - Psest_0596 0.32 -1.3
645,933 - Psest_0596 0.32 -0.1
645,933 - Psest_0596 0.32 -1.7
645,933 - Psest_0596 0.32 +0.2
645,933 - Psest_0596 0.32 -0.3
645,933 - Psest_0596 0.32 -0.2

Or see this region's nucleotide sequence