Experiment: syringaldehyde 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0567 and Psest_0568 are separated by 319 nucleotides Psest_0568 and Psest_0569 are separated by 21 nucleotides Psest_0569 and Psest_0570 are separated by 174 nucleotides Psest_0570 and Psest_0571 are separated by 160 nucleotides
Psest_0567: Psest_0567 - urea ABC transporter, urea binding protein, at 623,422 to 624,690
_0567
Psest_0568: Psest_0568 - pseudouridine synthase, at 625,010 to 625,639
_0568
Psest_0569: Psest_0569 - Protein of unknown function (DUF2788)., at 625,661 to 625,879
_0569
Psest_0570: Psest_0570 - hypothetical protein, at 626,054 to 626,446
_0570
Psest_0571: Psest_0571 - Transcriptional regulators, at 626,607 to 627,086
_0571
Position (kb) 625
626 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 624.077 kb on + strand, within Psest_0567 at 624.077 kb on + strand, within Psest_0567 at 624.077 kb on + strand, within Psest_0567 at 624.078 kb on - strand, within Psest_0567 at 624.078 kb on - strand, within Psest_0567 at 624.156 kb on - strand, within Psest_0567 at 624.161 kb on + strand, within Psest_0567 at 624.161 kb on + strand, within Psest_0567 at 624.161 kb on + strand, within Psest_0567 at 624.162 kb on - strand, within Psest_0567 at 624.162 kb on - strand, within Psest_0567 at 624.162 kb on - strand, within Psest_0567 at 624.162 kb on - strand, within Psest_0567 at 624.162 kb on - strand, within Psest_0567 at 624.263 kb on + strand, within Psest_0567 at 624.263 kb on + strand, within Psest_0567 at 624.263 kb on + strand, within Psest_0567 at 624.263 kb on + strand, within Psest_0567 at 624.264 kb on - strand, within Psest_0567 at 624.264 kb on - strand, within Psest_0567 at 624.296 kb on + strand, within Psest_0567 at 624.297 kb on - strand, within Psest_0567 at 624.308 kb on + strand, within Psest_0567 at 624.335 kb on + strand, within Psest_0567 at 624.335 kb on + strand, within Psest_0567 at 624.335 kb on + strand, within Psest_0567 at 624.336 kb on - strand, within Psest_0567 at 624.336 kb on - strand, within Psest_0567 at 624.336 kb on - strand, within Psest_0567 at 624.935 kb on + strand at 624.936 kb on - strand at 624.936 kb on - strand at 624.936 kb on - strand at 624.936 kb on - strand at 624.981 kb on - strand at 625.058 kb on - strand at 625.307 kb on + strand, within Psest_0568 at 625.308 kb on - strand, within Psest_0568 at 625.308 kb on - strand, within Psest_0568 at 625.308 kb on - strand, within Psest_0568 at 625.308 kb on - strand, within Psest_0568 at 625.428 kb on + strand, within Psest_0568 at 625.429 kb on - strand, within Psest_0568 at 625.638 kb on - strand at 625.944 kb on - strand at 625.944 kb on - strand at 625.944 kb on - strand at 625.945 kb on + strand at 625.945 kb on + strand at 625.945 kb on + strand at 625.945 kb on + strand at 625.945 kb on + strand at 625.946 kb on - strand at 625.946 kb on - strand at 625.946 kb on - strand at 625.946 kb on - strand at 625.946 kb on - strand at 626.160 kb on - strand, within Psest_0570 at 626.181 kb on + strand, within Psest_0570 at 626.181 kb on + strand, within Psest_0570 at 626.181 kb on + strand, within Psest_0570 at 626.182 kb on - strand, within Psest_0570 at 626.197 kb on + strand, within Psest_0570 at 626.373 kb on + strand, within Psest_0570 at 626.373 kb on + strand, within Psest_0570 at 626.373 kb on + strand, within Psest_0570 at 626.373 kb on + strand, within Psest_0570 at 626.374 kb on - strand, within Psest_0570 at 626.374 kb on - strand, within Psest_0570 at 626.374 kb on - strand, within Psest_0570 at 626.374 kb on - strand, within Psest_0570 at 626.374 kb on - strand, within Psest_0570 at 626.374 kb on - strand, within Psest_0570 at 626.374 kb on - strand, within Psest_0570 at 626.415 kb on + strand at 626.416 kb on - strand at 626.558 kb on + strand at 626.559 kb on - strand at 626.560 kb on + strand at 626.560 kb on + strand at 626.560 kb on + strand at 626.560 kb on + strand at 626.560 kb on + strand at 626.561 kb on - strand at 626.561 kb on - strand at 626.582 kb on + strand at 626.582 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 3 mM remove 624,077 + Psest_0567 0.52 +0.8 624,077 + Psest_0567 0.52 -1.1 624,077 + Psest_0567 0.52 +0.1 624,078 - Psest_0567 0.52 -1.3 624,078 - Psest_0567 0.52 +0.3 624,156 - Psest_0567 0.58 +0.7 624,161 + Psest_0567 0.58 -0.2 624,161 + Psest_0567 0.58 +2.1 624,161 + Psest_0567 0.58 +1.9 624,162 - Psest_0567 0.58 +2.1 624,162 - Psest_0567 0.58 -3.6 624,162 - Psest_0567 0.58 -1.7 624,162 - Psest_0567 0.58 +1.6 624,162 - Psest_0567 0.58 +0.4 624,263 + Psest_0567 0.66 +0.8 624,263 + Psest_0567 0.66 +1.1 624,263 + Psest_0567 0.66 -1.1 624,263 + Psest_0567 0.66 +3.3 624,264 - Psest_0567 0.66 +0.2 624,264 - Psest_0567 0.66 -1.5 624,296 + Psest_0567 0.69 -0.1 624,297 - Psest_0567 0.69 -1.4 624,308 + Psest_0567 0.70 +0.1 624,335 + Psest_0567 0.72 -0.2 624,335 + Psest_0567 0.72 -0.1 624,335 + Psest_0567 0.72 -0.2 624,336 - Psest_0567 0.72 +1.4 624,336 - Psest_0567 0.72 +1.4 624,336 - Psest_0567 0.72 -0.1 624,935 + -0.7 624,936 - +0.1 624,936 - +0.9 624,936 - +0.8 624,936 - -1.4 624,981 - -0.2 625,058 - +0.2 625,307 + Psest_0568 0.47 +1.5 625,308 - Psest_0568 0.47 +2.2 625,308 - Psest_0568 0.47 +0.5 625,308 - Psest_0568 0.47 +0.4 625,308 - Psest_0568 0.47 -1.5 625,428 + Psest_0568 0.66 +1.3 625,429 - Psest_0568 0.67 +2.6 625,638 - +0.9 625,944 - +1.2 625,944 - -1.8 625,944 - +1.6 625,945 + -0.3 625,945 + -0.2 625,945 + -0.1 625,945 + -0.2 625,945 + +2.1 625,946 - -0.8 625,946 - -1.7 625,946 - -1.0 625,946 - +1.7 625,946 - +0.3 626,160 - Psest_0570 0.27 -0.9 626,181 + Psest_0570 0.32 +0.3 626,181 + Psest_0570 0.32 +1.6 626,181 + Psest_0570 0.32 +0.9 626,182 - Psest_0570 0.33 +1.4 626,197 + Psest_0570 0.36 -0.9 626,373 + Psest_0570 0.81 +0.2 626,373 + Psest_0570 0.81 +0.7 626,373 + Psest_0570 0.81 -0.3 626,373 + Psest_0570 0.81 -0.2 626,374 - Psest_0570 0.81 +0.5 626,374 - Psest_0570 0.81 -1.2 626,374 - Psest_0570 0.81 +0.2 626,374 - Psest_0570 0.81 +1.2 626,374 - Psest_0570 0.81 +1.8 626,374 - Psest_0570 0.81 +1.9 626,374 - Psest_0570 0.81 +0.1 626,415 + -0.7 626,416 - +0.4 626,558 + -1.1 626,559 - -1.9 626,560 + -2.9 626,560 + -2.0 626,560 + -0.2 626,560 + +0.0 626,560 + -1.5 626,561 - +0.6 626,561 - +0.7 626,582 + -1.7 626,582 + -1.9
Or see this region's nucleotide sequence