Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3754

Experiment: syringaldehyde 3 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	syringaldehyde 3 mM
3,923,357	+				+2.1
3,923,450	+		Psest_3752	0.27	-1.8
3,923,459	+		Psest_3752	0.31	+1.0
3,923,459	+		Psest_3752	0.31	+0.1
3,923,460	-		Psest_3752	0.31	-1.1
3,923,465	-		Psest_3752	0.33	-0.6
3,923,548	+		Psest_3752	0.67	+2.2
3,923,548	+		Psest_3752	0.67	-1.7
3,923,549	-		Psest_3752	0.68	-0.7
3,923,549	-		Psest_3752	0.68	-0.5
3,923,549	-		Psest_3752	0.68	-0.1
3,923,618	+				+0.8
3,923,618	+				+0.0
3,923,618	+				-0.9
3,923,618	+				-0.8
3,923,618	+				+1.1
3,923,618	+				+0.9
3,923,618	+				+1.6
3,923,619	-				-0.8
3,923,619	-				+1.2
3,923,619	-				+1.6
3,923,619	-				-0.4
3,923,619	-				+1.5
3,923,723	+		Psest_3753	0.16	-1.6
3,923,724	-		Psest_3753	0.16	+0.1
3,923,724	-		Psest_3753	0.16	-0.3
3,923,724	-		Psest_3753	0.16	+1.0
3,923,849	+		Psest_3753	0.42	-0.9
3,923,849	+		Psest_3753	0.42	+0.5
3,923,861	+		Psest_3753	0.44	-2.5
3,923,861	+		Psest_3753	0.44	+1.3
3,923,891	+		Psest_3753	0.51	-0.3
3,923,906	+		Psest_3753	0.54	+0.2
3,923,906	+		Psest_3753	0.54	+0.0
3,923,906	+		Psest_3753	0.54	-0.3
3,924,041	+		Psest_3753	0.82	+0.1
3,924,041	+		Psest_3753	0.82	-1.0
3,924,041	+		Psest_3753	0.82	-2.2
3,924,042	-		Psest_3753	0.82	+1.4
3,924,042	-		Psest_3753	0.82	-1.5
3,924,232	+				-1.1
3,924,232	+				-0.3
3,924,232	+				-2.8
3,924,232	+				-0.9
3,924,233	-				+1.2
3,924,233	-				-1.3
3,924,233	-				+1.0
3,924,233	-				-0.1
3,924,372	-		Psest_3754	0.18	-0.1
3,924,509	+		Psest_3754	0.30	-0.7
3,924,509	+		Psest_3754	0.30	-0.8
3,924,509	+		Psest_3754	0.30	-0.6
3,925,023	-		Psest_3754	0.74	+0.1
3,925,090	+		Psest_3754	0.80	-2.4
3,925,091	-		Psest_3754	0.80	+0.2
3,925,355	+				-0.1
3,925,355	+				-0.9
3,925,355	+				-1.5
3,925,355	+				-0.2
3,925,355	+				+0.7
3,925,355	+				-0.8
3,925,355	+				-1.1
3,925,355	+				-0.8
3,925,355	+				+2.8
3,925,355	+				+1.4
3,925,355	+				-1.9
3,925,356	-				-0.5
3,925,356	-				+1.3
3,925,356	-				-0.5
3,925,356	-				-0.9
3,925,356	-				-1.5
3,925,356	-				-0.5
3,925,356	-				-0.4
3,925,356	-				+0.4
3,925,356	-				+0.9
3,925,356	-				+0.4
3,925,356	-				-0.2
3,925,356	-				+0.3
3,925,495	-		Psest_3755	0.16	+0.6
3,925,548	+		Psest_3755	0.26	+0.3
3,925,548	+		Psest_3755	0.26	-1.5
3,925,548	+		Psest_3755	0.26	+0.6
3,925,549	-		Psest_3755	0.26	+0.8
3,925,549	-		Psest_3755	0.26	-1.5
3,925,549	-		Psest_3755	0.26	-0.2
3,925,549	-		Psest_3755	0.26	-0.0
3,925,549	-		Psest_3755	0.26	-0.7
3,925,549	-		Psest_3755	0.26	-0.5
3,925,552	+		Psest_3755	0.27	-0.4
3,925,553	-		Psest_3755	0.27	-1.0
3,925,553	-		Psest_3755	0.27	-2.2
3,925,553	-		Psest_3755	0.27	+0.4
3,925,750	+		Psest_3755	0.64	+0.8
3,925,751	-		Psest_3755	0.65	-0.5
3,925,751	-		Psest_3755	0.65	-3.0
3,925,751	-		Psest_3755	0.65	-0.5
3,925,774	+		Psest_3755	0.69	+2.2
3,925,775	-		Psest_3755	0.69	+0.3
3,925,775	-		Psest_3755	0.69	-1.7
3,925,837	-		Psest_3755	0.81	-0.3
3,925,853	-		Psest_3755	0.84	-0.0
3,925,853	-		Psest_3755	0.84	+2.6
3,925,853	-		Psest_3755	0.84	+1.1
3,925,853	-		Psest_3755	0.84	-2.4
3,925,853	-		Psest_3755	0.84	-0.9
3,925,853	-		Psest_3755	0.84	+0.4
3,925,853	-		Psest_3755	0.84	+0.8
3,925,865	+		Psest_3755	0.86	+1.4
3,925,865	+		Psest_3755	0.86	+0.6
3,925,865	+		Psest_3755	0.86	-0.5
3,925,865	+		Psest_3755	0.86	+1.0
3,925,865	+		Psest_3755	0.86	+1.7
3,925,866	-		Psest_3755	0.86	-2.1
3,925,866	-		Psest_3755	0.86	-0.3
3,925,866	-		Psest_3755	0.86	+1.3
3,925,866	-		Psest_3755	0.86	-0.8
3,925,866	-		Psest_3755	0.86	-0.6
3,925,866	-		Psest_3755	0.86	-1.2
3,925,866	-		Psest_3755	0.86	-0.4
3,925,866	-		Psest_3755	0.86	+0.3
3,925,928	+				+0.1
3,925,946	+				-0.5
3,925,946	+				+1.6
3,925,946	+				+1.4
3,925,946	+				+0.2
3,925,946	+				+1.8
3,925,946	+				+0.0
3,925,947	-				-0.1
3,925,947	-				-0.4
3,925,947	-				+0.6
3,925,947	-				-1.5
3,925,947	-				-0.7
3,925,947	-				+0.2
3,925,947	-				-0.3
3,925,947	-				+2.6
3,925,947	-				-0.6
3,925,947	-				-2.8
3,925,947	-				-1.5
3,925,947	-				+0.5
3,925,961	-				-1.6
3,925,974	+				-2.6
3,925,974	+				+1.0
3,925,974	+				-2.0
3,925,975	-				+1.2
3,925,975	-				+1.0
3,925,975	-				-1.2
3,925,975	-				-0.5
3,925,975	-				-0.3
3,926,001	+				+0.2
3,926,001	+				-0.6
3,926,001	+				-1.2
3,926,001	+				+0.1
3,926,002	-				+1.0
3,926,002	-				+0.8
3,926,002	-				-0.1
3,926,002	-				-0.1
3,926,002	-				-1.5
3,926,002	-				-0.6
3,926,002	-				-0.2
3,926,002	-				-0.3
3,926,002	-				-0.2
3,926,110	+		Psest_3756	0.23	-0.8
3,926,111	-		Psest_3756	0.24	+0.2
3,926,111	-		Psest_3756	0.24	+1.2
3,926,111	-		Psest_3756	0.24	-2.5