Experiment: syringaldehyde 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2845 and Psest_2846 are separated by 52 nucleotides Psest_2846 and Psest_2847 are separated by 9 nucleotides Psest_2847 and Psest_2848 overlap by 16 nucleotides Psest_2848 and Psest_2849 overlap by 4 nucleotides
Psest_2845: Psest_2845 - [Protein-PII] uridylyltransferase, at 3,035,056 to 3,037,758
_2845
Psest_2846: Psest_2846 - monovalent cation/proton antiporter, MnhG/PhaG subunit, at 3,037,811 to 3,038,140
_2846
Psest_2847: Psest_2847 - Multisubunit Na+/H+ antiporter, MnhF subunit, at 3,038,150 to 3,038,419
_2847
Psest_2848: Psest_2848 - Multisubunit Na+/H+ antiporter, MnhE subunit, at 3,038,404 to 3,038,904
_2848
Psest_2849: Psest_2849 - Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit, at 3,038,901 to 3,040,400
_2849
Position (kb)
3038
3039 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3037.882 kb on + strand, within Psest_2846 at 3037.882 kb on + strand, within Psest_2846 at 3037.882 kb on + strand, within Psest_2846 at 3037.882 kb on + strand, within Psest_2846 at 3037.883 kb on - strand, within Psest_2846 at 3037.883 kb on - strand, within Psest_2846 at 3037.883 kb on - strand, within Psest_2846 at 3037.997 kb on + strand, within Psest_2846 at 3038.120 kb on + strand at 3038.121 kb on - strand at 3038.121 kb on - strand at 3038.161 kb on + strand at 3038.197 kb on + strand, within Psest_2847 at 3038.298 kb on + strand, within Psest_2847 at 3038.298 kb on + strand, within Psest_2847 at 3038.299 kb on - strand, within Psest_2847 at 3038.299 kb on - strand, within Psest_2847 at 3038.299 kb on - strand, within Psest_2847 at 3038.405 kb on + strand at 3038.406 kb on - strand at 3038.409 kb on + strand at 3038.410 kb on - strand at 3038.447 kb on + strand at 3038.447 kb on + strand at 3038.448 kb on - strand at 3038.448 kb on - strand at 3038.448 kb on - strand at 3038.448 kb on - strand at 3038.448 kb on - strand at 3038.448 kb on - strand at 3038.696 kb on + strand, within Psest_2848 at 3038.784 kb on + strand, within Psest_2848 at 3038.932 kb on + strand at 3038.933 kb on - strand at 3039.327 kb on + strand, within Psest_2849 at 3039.327 kb on + strand, within Psest_2849 at 3039.327 kb on + strand, within Psest_2849 at 3039.328 kb on - strand, within Psest_2849 at 3039.328 kb on - strand, within Psest_2849 at 3039.328 kb on - strand, within Psest_2849 at 3039.403 kb on + strand, within Psest_2849 at 3039.407 kb on - strand, within Psest_2849 at 3039.407 kb on - strand, within Psest_2849 at 3039.407 kb on - strand, within Psest_2849
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 3 mM remove 3,037,882 + Psest_2846 0.22 -0.4 3,037,882 + Psest_2846 0.22 +0.2 3,037,882 + Psest_2846 0.22 +0.9 3,037,882 + Psest_2846 0.22 +0.1 3,037,883 - Psest_2846 0.22 +1.0 3,037,883 - Psest_2846 0.22 -2.1 3,037,883 - Psest_2846 0.22 +0.2 3,037,997 + Psest_2846 0.56 +0.3 3,038,120 + -2.2 3,038,121 - +0.5 3,038,121 - -2.5 3,038,161 + +0.8 3,038,197 + Psest_2847 0.17 -1.1 3,038,298 + Psest_2847 0.55 -2.1 3,038,298 + Psest_2847 0.55 -0.1 3,038,299 - Psest_2847 0.55 -1.1 3,038,299 - Psest_2847 0.55 -1.7 3,038,299 - Psest_2847 0.55 -1.9 3,038,405 + +1.5 3,038,406 - -0.4 3,038,409 + -1.5 3,038,410 - -1.2 3,038,447 + +0.0 3,038,447 + -0.3 3,038,448 - -3.1 3,038,448 - +1.2 3,038,448 - +2.0 3,038,448 - -0.2 3,038,448 - -1.0 3,038,448 - -0.9 3,038,696 + Psest_2848 0.58 +0.1 3,038,784 + Psest_2848 0.76 +0.1 3,038,932 + -2.2 3,038,933 - +0.5 3,039,327 + Psest_2849 0.28 -0.1 3,039,327 + Psest_2849 0.28 -0.3 3,039,327 + Psest_2849 0.28 +2.3 3,039,328 - Psest_2849 0.28 +0.5 3,039,328 - Psest_2849 0.28 +0.8 3,039,328 - Psest_2849 0.28 +0.0 3,039,403 + Psest_2849 0.33 +0.0 3,039,407 - Psest_2849 0.34 -2.5 3,039,407 - Psest_2849 0.34 +0.7 3,039,407 - Psest_2849 0.34 -0.8
Or see this region's nucleotide sequence