Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0101

Experiment: syringaldehyde 3 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0100 and Psest_0101 are separated by 275 nucleotidesPsest_0101 and Psest_0102 are separated by 173 nucleotides Psest_0100: Psest_0100 - phosphonate ABC transporter, ATP-binding protein, at 99,306 to 100,136 _0100 Psest_0101: Psest_0101 - Short-chain alcohol dehydrogenase of unknown specificity, at 100,412 to 101,176 _0101 Psest_0102: Psest_0102 - malonate decarboxylase, alpha subunit, at 101,350 to 103,017 _0102 Position (kb) 100 101 102Strain fitness (log2 ratio) -2 -1 0 1 2 3at 99.481 kb on + strand, within Psest_0100at 99.493 kb on + strand, within Psest_0100at 99.493 kb on + strand, within Psest_0100at 99.868 kb on + strand, within Psest_0100at 99.869 kb on - strand, within Psest_0100at 99.869 kb on - strand, within Psest_0100at 99.894 kb on + strand, within Psest_0100at 99.894 kb on + strand, within Psest_0100at 99.894 kb on + strand, within Psest_0100at 99.894 kb on + strand, within Psest_0100at 99.895 kb on - strand, within Psest_0100at 99.895 kb on - strand, within Psest_0100at 99.895 kb on - strand, within Psest_0100at 100.185 kb on - strandat 100.196 kb on + strandat 100.196 kb on + strandat 100.221 kb on + strandat 100.221 kb on + strandat 100.336 kb on + strandat 100.428 kb on + strandat 100.428 kb on + strandat 100.428 kb on + strandat 100.429 kb on - strandat 100.429 kb on - strandat 100.429 kb on - strandat 100.868 kb on + strand, within Psest_0101at 100.907 kb on - strand, within Psest_0101at 101.078 kb on + strand, within Psest_0101at 101.078 kb on + strand, within Psest_0101at 101.078 kb on + strand, within Psest_0101at 101.078 kb on + strand, within Psest_0101at 101.078 kb on + strand, within Psest_0101at 101.079 kb on - strand, within Psest_0101at 101.079 kb on - strand, within Psest_0101at 101.079 kb on - strand, within Psest_0101at 101.174 kb on + strandat 101.174 kb on + strandat 101.175 kb on - strandat 101.175 kb on - strandat 101.175 kb on - strandat 101.175 kb on - strandat 101.175 kb on - strandat 101.175 kb on - strandat 101.175 kb on - strandat 101.175 kb on - strandat 101.175 kb on - strandat 101.175 kb on - strandat 101.187 kb on + strandat 101.248 kb on - strandat 101.311 kb on + strandat 101.311 kb on + strandat 101.312 kb on - strandat 101.312 kb on - strandat 101.312 kb on - strandat 101.312 kb on - strandat 101.312 kb on - strandat 101.312 kb on - strandat 101.749 kb on + strand, within Psest_0102at 101.749 kb on + strand, within Psest_0102at 101.749 kb on + strand, within Psest_0102at 101.749 kb on + strand, within Psest_0102at 101.749 kb on + strand, within Psest_0102at 101.749 kb on + strand, within Psest_0102at 101.749 kb on + strand, within Psest_0102at 101.750 kb on - strand, within Psest_0102at 101.750 kb on - strand, within Psest_0102at 101.750 kb on - strand, within Psest_0102at 101.750 kb on - strand, within Psest_0102at 101.750 kb on - strand, within Psest_0102at 101.750 kb on - strand, within Psest_0102at 101.750 kb on - strand, within Psest_0102at 101.750 kb on - strand, within Psest_0102at 101.750 kb on - strand, within Psest_0102at 101.750 kb on - strand, within Psest_0102at 101.750 kb on - strand, within Psest_0102at 101.750 kb on - strand, within Psest_0102at 101.761 kb on + strand, within Psest_0102at 101.761 kb on + strand, within Psest_0102at 101.761 kb on + strand, within Psest_0102at 101.762 kb on - strand, within Psest_0102at 101.839 kb on + strand, within Psest_0102at 101.839 kb on + strand, within Psest_0102at 101.839 kb on + strand, within Psest_0102at 101.839 kb on + strand, within Psest_0102at 101.839 kb on + strand, within Psest_0102at 101.839 kb on + strand, within Psest_0102at 101.839 kb on + strand, within Psest_0102at 101.839 kb on + strand, within Psest_0102at 101.839 kb on + strand, within Psest_0102at 101.840 kb on - strand, within Psest_0102at 101.840 kb on - strand, within Psest_0102at 101.840 kb on - strand, within Psest_0102at 101.840 kb on - strand, within Psest_0102at 101.840 kb on - strand, within Psest_0102at 101.840 kb on - strand, within Psest_0102at 102.001 kb on + strand, within Psest_0102at 102.001 kb on + strand, within Psest_0102at 102.085 kb on + strand, within Psest_0102at 102.085 kb on + strand, within Psest_0102at 102.085 kb on + strand, within Psest_0102at 102.085 kb on + strand, within Psest_0102at 102.085 kb on + strand, within Psest_0102at 102.086 kb on - strand, within Psest_0102at 102.086 kb on - strand, within Psest_0102

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 3 mM
remove
99,481 + Psest_0100 0.21 +0.4
99,493 + Psest_0100 0.23 +0.2
99,493 + Psest_0100 0.23 +0.7
99,868 + Psest_0100 0.68 -1.4
99,869 - Psest_0100 0.68 -0.7
99,869 - Psest_0100 0.68 -0.6
99,894 + Psest_0100 0.71 -2.0
99,894 + Psest_0100 0.71 +0.9
99,894 + Psest_0100 0.71 -0.9
99,894 + Psest_0100 0.71 -0.8
99,895 - Psest_0100 0.71 -0.5
99,895 - Psest_0100 0.71 -1.6
99,895 - Psest_0100 0.71 +2.1
100,185 - -0.5
100,196 + -2.0
100,196 + -0.3
100,221 + -1.2
100,221 + +0.0
100,336 + +0.3
100,428 + -2.0
100,428 + -1.1
100,428 + +0.6
100,429 - -0.2
100,429 - -1.4
100,429 - -1.2
100,868 + Psest_0101 0.60 -0.8
100,907 - Psest_0101 0.65 -2.3
101,078 + Psest_0101 0.87 -1.2
101,078 + Psest_0101 0.87 -0.8
101,078 + Psest_0101 0.87 -0.7
101,078 + Psest_0101 0.87 -1.5
101,078 + Psest_0101 0.87 -0.7
101,079 - Psest_0101 0.87 -0.2
101,079 - Psest_0101 0.87 +0.1
101,079 - Psest_0101 0.87 -0.5
101,174 + -0.4
101,174 + +1.1
101,175 - +0.4
101,175 - +3.0
101,175 - +0.4
101,175 - +1.1
101,175 - -1.1
101,175 - +1.1
101,175 - -1.5
101,175 - +0.1
101,175 - -1.6
101,175 - -1.8
101,187 + -1.3
101,248 - +1.7
101,311 + -0.8
101,311 + +0.2
101,312 - +0.1
101,312 - +0.1
101,312 - +2.4
101,312 - -1.1
101,312 - -0.9
101,312 - -0.3
101,749 + Psest_0102 0.24 +0.5
101,749 + Psest_0102 0.24 -0.2
101,749 + Psest_0102 0.24 -2.2
101,749 + Psest_0102 0.24 -1.3
101,749 + Psest_0102 0.24 -0.3
101,749 + Psest_0102 0.24 -1.3
101,749 + Psest_0102 0.24 +0.7
101,750 - Psest_0102 0.24 -0.4
101,750 - Psest_0102 0.24 -0.9
101,750 - Psest_0102 0.24 +1.6
101,750 - Psest_0102 0.24 -0.1
101,750 - Psest_0102 0.24 +1.2
101,750 - Psest_0102 0.24 -0.2
101,750 - Psest_0102 0.24 +2.5
101,750 - Psest_0102 0.24 +1.5
101,750 - Psest_0102 0.24 +0.8
101,750 - Psest_0102 0.24 +1.9
101,750 - Psest_0102 0.24 -1.9
101,750 - Psest_0102 0.24 +1.4
101,761 + Psest_0102 0.25 +1.2
101,761 + Psest_0102 0.25 +0.9
101,761 + Psest_0102 0.25 -0.1
101,762 - Psest_0102 0.25 -1.2
101,839 + Psest_0102 0.29 -0.6
101,839 + Psest_0102 0.29 -0.6
101,839 + Psest_0102 0.29 +1.3
101,839 + Psest_0102 0.29 +0.1
101,839 + Psest_0102 0.29 +0.7
101,839 + Psest_0102 0.29 -0.4
101,839 + Psest_0102 0.29 +0.1
101,839 + Psest_0102 0.29 -0.4
101,839 + Psest_0102 0.29 +0.1
101,840 - Psest_0102 0.29 +0.3
101,840 - Psest_0102 0.29 +0.9
101,840 - Psest_0102 0.29 +1.1
101,840 - Psest_0102 0.29 -0.9
101,840 - Psest_0102 0.29 -0.5
101,840 - Psest_0102 0.29 +0.9
102,001 + Psest_0102 0.39 -0.0
102,001 + Psest_0102 0.39 -0.6
102,085 + Psest_0102 0.44 -0.1
102,085 + Psest_0102 0.44 -1.0
102,085 + Psest_0102 0.44 +0.6
102,085 + Psest_0102 0.44 -0.9
102,085 + Psest_0102 0.44 +1.7
102,086 - Psest_0102 0.44 -0.4
102,086 - Psest_0102 0.44 -0.1

Or see this region's nucleotide sequence