Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3816

Experiment: Furfuryl Alcohol 0.3 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3814 and Psest_3815 are separated by 69 nucleotidesPsest_3815 and Psest_3816 are separated by 115 nucleotidesPsest_3816 and Psest_3817 are separated by 60 nucleotides Psest_3814: Psest_3814 - TIGR00255 family protein, at 3,984,488 to 3,985,351 _3814 Psest_3815: Psest_3815 - guanylate kinase, at 3,985,421 to 3,986,041 _3815 Psest_3816: Psest_3816 - DNA-directed RNA polymerase, omega subunit, at 3,986,157 to 3,986,420 _3816 Psest_3817: Psest_3817 - (p)ppGpp synthetase, RelA/SpoT family, at 3,986,481 to 3,988,589 _3817 Position (kb) 3986 3987Strain fitness (log2 ratio) -3 -2 -1 0 1at 3985.377 kb on + strandat 3985.377 kb on + strandat 3986.040 kb on - strandat 3986.097 kb on + strandat 3986.102 kb on + strandat 3986.337 kb on + strand, within Psest_3816at 3986.337 kb on + strand, within Psest_3816

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.3 vol%
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3,985,377 + -0.0
3,985,377 + +0.7
3,986,040 - -2.8
3,986,097 + -1.8
3,986,102 + -0.6
3,986,337 + Psest_3816 0.68 -0.9
3,986,337 + Psest_3816 0.68 -0.5

Or see this region's nucleotide sequence