Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3496

Experiment: Furfuryl Alcohol 0.3 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3495 and Psest_3496 are separated by 117 nucleotidesPsest_3496 and Psest_3497 are separated by 129 nucleotides Psest_3495: Psest_3495 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 3,668,285 to 3,669,028 _3495 Psest_3496: Psest_3496 - Predicted metal-binding protein, at 3,669,146 to 3,669,580 _3496 Psest_3497: Psest_3497 - Predicted metalloprotease, at 3,669,710 to 3,670,567 _3497 Position (kb) 3669 3670Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3668.200 kb on + strandat 3668.200 kb on + strandat 3668.200 kb on + strandat 3668.200 kb on + strandat 3668.200 kb on + strandat 3668.200 kb on + strandat 3668.201 kb on - strandat 3668.201 kb on - strandat 3668.244 kb on - strandat 3668.254 kb on + strandat 3668.254 kb on + strandat 3668.254 kb on + strandat 3668.254 kb on + strandat 3668.254 kb on + strandat 3668.254 kb on + strandat 3668.254 kb on + strandat 3668.254 kb on + strandat 3668.254 kb on + strandat 3668.254 kb on + strandat 3668.254 kb on + strandat 3668.254 kb on + strandat 3668.254 kb on + strandat 3668.254 kb on + strandat 3668.255 kb on - strandat 3668.255 kb on - strandat 3668.255 kb on - strandat 3668.255 kb on - strandat 3668.255 kb on - strandat 3668.255 kb on - strandat 3668.255 kb on - strandat 3668.255 kb on - strandat 3668.255 kb on - strandat 3668.257 kb on + strandat 3668.258 kb on - strandat 3668.276 kb on + strandat 3668.277 kb on - strandat 3668.414 kb on + strand, within Psest_3495at 3668.414 kb on + strand, within Psest_3495at 3668.415 kb on - strand, within Psest_3495at 3668.552 kb on + strand, within Psest_3495at 3668.552 kb on + strand, within Psest_3495at 3668.616 kb on + strand, within Psest_3495at 3668.616 kb on + strand, within Psest_3495at 3668.616 kb on + strand, within Psest_3495at 3668.616 kb on + strand, within Psest_3495at 3668.811 kb on + strand, within Psest_3495at 3668.811 kb on + strand, within Psest_3495at 3668.811 kb on + strand, within Psest_3495at 3668.811 kb on + strand, within Psest_3495at 3668.812 kb on - strand, within Psest_3495at 3669.145 kb on + strandat 3669.145 kb on + strandat 3669.145 kb on + strandat 3669.146 kb on - strandat 3669.426 kb on + strand, within Psest_3496at 3669.426 kb on + strand, within Psest_3496at 3669.427 kb on - strand, within Psest_3496at 3669.744 kb on + strandat 3669.745 kb on - strandat 3669.809 kb on - strand, within Psest_3497at 3670.088 kb on + strand, within Psest_3497at 3670.088 kb on + strand, within Psest_3497at 3670.089 kb on - strand, within Psest_3497at 3670.181 kb on + strand, within Psest_3497at 3670.181 kb on + strand, within Psest_3497at 3670.181 kb on + strand, within Psest_3497at 3670.181 kb on + strand, within Psest_3497at 3670.182 kb on - strandat 3670.182 kb on - strand, within Psest_3497at 3670.182 kb on - strand, within Psest_3497at 3670.182 kb on - strand, within Psest_3497at 3670.565 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.3 vol%
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3,668,200 + -0.3
3,668,200 + +2.7
3,668,200 + -0.3
3,668,200 + +1.5
3,668,200 + +0.0
3,668,200 + -0.2
3,668,201 - +0.1
3,668,201 - -0.3
3,668,244 - -1.1
3,668,254 + -2.4
3,668,254 + -1.8
3,668,254 + +0.8
3,668,254 + +0.2
3,668,254 + +0.8
3,668,254 + -2.0
3,668,254 + -0.1
3,668,254 + +2.1
3,668,254 + +0.9
3,668,254 + -0.0
3,668,254 + +2.0
3,668,254 + -0.4
3,668,254 + +1.0
3,668,254 + -1.5
3,668,255 - -0.2
3,668,255 - -0.1
3,668,255 - +1.3
3,668,255 - -0.7
3,668,255 - -0.3
3,668,255 - -1.3
3,668,255 - -0.4
3,668,255 - +1.0
3,668,255 - -0.7
3,668,257 + -0.8
3,668,258 - +0.1
3,668,276 + +0.2
3,668,277 - -1.0
3,668,414 + Psest_3495 0.17 +0.9
3,668,414 + Psest_3495 0.17 -1.1
3,668,415 - Psest_3495 0.17 -2.0
3,668,552 + Psest_3495 0.36 -0.0
3,668,552 + Psest_3495 0.36 +3.1
3,668,616 + Psest_3495 0.44 +0.7
3,668,616 + Psest_3495 0.44 +0.2
3,668,616 + Psest_3495 0.44 -0.1
3,668,616 + Psest_3495 0.44 -2.8
3,668,811 + Psest_3495 0.71 +0.3
3,668,811 + Psest_3495 0.71 -0.1
3,668,811 + Psest_3495 0.71 +1.3
3,668,811 + Psest_3495 0.71 -0.4
3,668,812 - Psest_3495 0.71 +0.1
3,669,145 + +1.4
3,669,145 + -0.1
3,669,145 + -2.5
3,669,146 - -1.0
3,669,426 + Psest_3496 0.64 -0.6
3,669,426 + Psest_3496 0.64 -1.0
3,669,427 - Psest_3496 0.65 -2.1
3,669,744 + -0.3
3,669,745 - +0.9
3,669,809 - Psest_3497 0.12 -1.2
3,670,088 + Psest_3497 0.44 -1.0
3,670,088 + Psest_3497 0.44 +0.6
3,670,089 - Psest_3497 0.44 +0.3
3,670,181 + Psest_3497 0.55 -0.4
3,670,181 + Psest_3497 0.55 -1.5
3,670,181 + Psest_3497 0.55 -0.5
3,670,181 + Psest_3497 0.55 +0.2
3,670,182 - -0.0
3,670,182 - Psest_3497 0.55 -0.3
3,670,182 - Psest_3497 0.55 +0.9
3,670,182 - Psest_3497 0.55 -0.3
3,670,565 + +1.5

Or see this region's nucleotide sequence