Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3478
Experiment: Furfuryl Alcohol 0.3 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Furfuryl Alcohol 0.3 vol% |
---|---|---|---|---|---|
remove | |||||
3,647,223 | - | Psest_3477 | 0.80 | +0.9 | |
3,647,223 | - | Psest_3477 | 0.80 | -0.6 | |
3,647,507 | + | -0.3 | |||
3,647,507 | + | +0.4 | |||
3,647,507 | + | -0.0 | |||
3,647,508 | - | +0.4 | |||
3,647,547 | + | -0.7 | |||
3,647,547 | + | -0.8 | |||
3,647,561 | + | -0.5 | |||
3,647,561 | + | +0.4 | |||
3,647,561 | + | -1.0 | |||
3,647,561 | + | -0.2 | |||
3,647,561 | + | -1.2 | |||
3,647,561 | + | +0.8 | |||
3,647,562 | - | +0.1 | |||
3,647,562 | - | +2.6 | |||
3,647,562 | - | -1.0 | |||
3,647,562 | - | +0.5 | |||
3,647,562 | - | -2.1 | |||
3,647,562 | - | +1.7 | |||
3,647,590 | + | -0.3 | |||
3,647,591 | - | +0.9 | |||
3,647,626 | - | -3.5 | |||
3,647,626 | - | -0.4 | |||
3,647,886 | + | Psest_3478 | 0.52 | +2.0 | |
3,647,887 | - | Psest_3478 | 0.52 | +1.0 | |
3,648,094 | - | -0.2 | |||
3,648,094 | - | +0.1 | |||
3,648,233 | + | -1.0 | |||
3,648,233 | + | -0.4 | |||
3,648,233 | + | -2.0 | |||
3,648,234 | - | +1.0 | |||
3,648,806 | + | Psest_3479 | 0.49 | -0.9 | |
3,648,821 | + | Psest_3479 | 0.50 | +0.1 | |
3,648,821 | + | Psest_3479 | 0.50 | +0.6 | |
3,648,822 | - | Psest_3479 | 0.50 | +0.5 | |
3,648,822 | - | Psest_3479 | 0.50 | -1.0 | |
3,648,822 | - | Psest_3479 | 0.50 | -0.1 | |
3,649,053 | + | Psest_3479 | 0.69 | -0.5 | |
3,649,054 | - | Psest_3479 | 0.69 | -2.6 |
Or see this region's nucleotide sequence