Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3356

Experiment: Furfuryl Alcohol 0.3 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3355 and Psest_3356 are separated by 181 nucleotidesPsest_3356 and Psest_3357 are separated by 67 nucleotidesPsest_3357 and Psest_3358 overlap by 4 nucleotides Psest_3355: Psest_3355 - fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data), at 3,524,383 to 3,527,265 _3355 Psest_3356: Psest_3356 - D-fructose-responsive transcription factor, at 3,527,447 to 3,528,436 _3356 Psest_3357: Psest_3357 - Predicted pyrophosphatase, at 3,528,504 to 3,528,809 _3357 Psest_3358: Psest_3358 - Methyltransferase domain., at 3,528,806 to 3,529,555 _3358 Position (kb) 3527 3528 3529Strain fitness (log2 ratio) -2 -1 0 1 2at 3526.985 kb on + strandat 3526.986 kb on - strandat 3526.986 kb on - strandat 3527.235 kb on + strandat 3527.235 kb on + strandat 3527.236 kb on - strandat 3527.236 kb on - strandat 3527.236 kb on - strandat 3527.388 kb on - strandat 3527.394 kb on + strandat 3527.395 kb on - strandat 3527.423 kb on + strandat 3527.424 kb on - strandat 3527.424 kb on - strandat 3527.501 kb on + strandat 3527.501 kb on + strandat 3527.501 kb on + strandat 3527.501 kb on + strandat 3527.502 kb on - strandat 3527.502 kb on - strandat 3527.502 kb on - strandat 3527.502 kb on - strandat 3527.502 kb on - strandat 3527.502 kb on - strandat 3527.502 kb on - strandat 3527.502 kb on - strandat 3527.672 kb on + strand, within Psest_3356at 3527.672 kb on + strand, within Psest_3356at 3527.846 kb on + strand, within Psest_3356at 3528.185 kb on + strand, within Psest_3356at 3528.185 kb on + strand, within Psest_3356at 3528.185 kb on + strand, within Psest_3356at 3528.185 kb on + strand, within Psest_3356at 3528.186 kb on - strand, within Psest_3356at 3528.186 kb on - strand, within Psest_3356at 3528.186 kb on - strand, within Psest_3356at 3528.186 kb on - strand, within Psest_3356at 3528.186 kb on - strand, within Psest_3356at 3528.717 kb on + strand, within Psest_3357at 3528.717 kb on + strand, within Psest_3357at 3528.718 kb on - strand, within Psest_3357at 3528.718 kb on - strand, within Psest_3357at 3528.718 kb on - strand, within Psest_3357at 3528.718 kb on - strand, within Psest_3357at 3528.718 kb on - strand, within Psest_3357at 3528.968 kb on - strand, within Psest_3358at 3528.968 kb on - strand, within Psest_3358at 3529.238 kb on + strand, within Psest_3358at 3529.238 kb on + strand, within Psest_3358at 3529.238 kb on + strand, within Psest_3358at 3529.238 kb on + strand, within Psest_3358at 3529.239 kb on - strand, within Psest_3358at 3529.239 kb on - strand, within Psest_3358at 3529.239 kb on - strand, within Psest_3358at 3529.239 kb on - strand, within Psest_3358at 3529.259 kb on + strand, within Psest_3358at 3529.260 kb on - strand, within Psest_3358at 3529.260 kb on - strand, within Psest_3358at 3529.307 kb on + strand, within Psest_3358at 3529.308 kb on - strand, within Psest_3358at 3529.308 kb on - strand, within Psest_3358at 3529.308 kb on - strand, within Psest_3358at 3529.308 kb on - strand, within Psest_3358at 3529.427 kb on + strand, within Psest_3358at 3529.427 kb on + strand, within Psest_3358at 3529.427 kb on + strand, within Psest_3358at 3529.427 kb on + strand, within Psest_3358at 3529.427 kb on + strand, within Psest_3358at 3529.427 kb on + strand, within Psest_3358at 3529.427 kb on + strand, within Psest_3358at 3529.427 kb on + strand, within Psest_3358at 3529.428 kb on - strand, within Psest_3358at 3529.428 kb on - strand, within Psest_3358at 3529.428 kb on - strand, within Psest_3358at 3529.428 kb on - strand, within Psest_3358at 3529.428 kb on - strand, within Psest_3358at 3529.428 kb on - strand, within Psest_3358at 3529.428 kb on - strand, within Psest_3358at 3529.428 kb on - strand, within Psest_3358at 3529.428 kb on - strand, within Psest_3358at 3529.428 kb on - strand, within Psest_3358

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.3 vol%
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3,526,985 + +1.0
3,526,986 - +0.2
3,526,986 - +0.8
3,527,235 + +0.4
3,527,235 + -1.0
3,527,236 - +0.9
3,527,236 - +1.6
3,527,236 - +1.0
3,527,388 - -0.6
3,527,394 + -0.8
3,527,395 - -1.2
3,527,423 + +0.1
3,527,424 - -0.3
3,527,424 - +1.5
3,527,501 + +2.1
3,527,501 + +0.9
3,527,501 + -1.2
3,527,501 + +0.8
3,527,502 - +0.4
3,527,502 - +0.0
3,527,502 - -2.5
3,527,502 - -1.2
3,527,502 - -1.4
3,527,502 - -0.3
3,527,502 - +1.2
3,527,502 - +0.4
3,527,672 + Psest_3356 0.23 +0.2
3,527,672 + Psest_3356 0.23 -1.9
3,527,846 + Psest_3356 0.40 -1.0
3,528,185 + Psest_3356 0.75 -0.4
3,528,185 + Psest_3356 0.75 -1.4
3,528,185 + Psest_3356 0.75 -1.4
3,528,185 + Psest_3356 0.75 -1.4
3,528,186 - Psest_3356 0.75 +1.4
3,528,186 - Psest_3356 0.75 -1.7
3,528,186 - Psest_3356 0.75 -0.8
3,528,186 - Psest_3356 0.75 -0.3
3,528,186 - Psest_3356 0.75 -1.0
3,528,717 + Psest_3357 0.70 -1.9
3,528,717 + Psest_3357 0.70 -1.1
3,528,718 - Psest_3357 0.70 -0.7
3,528,718 - Psest_3357 0.70 -2.3
3,528,718 - Psest_3357 0.70 +0.3
3,528,718 - Psest_3357 0.70 +0.8
3,528,718 - Psest_3357 0.70 -1.0
3,528,968 - Psest_3358 0.22 +2.5
3,528,968 - Psest_3358 0.22 -1.8
3,529,238 + Psest_3358 0.58 -2.5
3,529,238 + Psest_3358 0.58 +0.7
3,529,238 + Psest_3358 0.58 +2.7
3,529,238 + Psest_3358 0.58 +1.4
3,529,239 - Psest_3358 0.58 -0.2
3,529,239 - Psest_3358 0.58 +0.6
3,529,239 - Psest_3358 0.58 -1.4
3,529,239 - Psest_3358 0.58 +0.0
3,529,259 + Psest_3358 0.60 +0.8
3,529,260 - Psest_3358 0.61 -1.0
3,529,260 - Psest_3358 0.61 +0.5
3,529,307 + Psest_3358 0.67 +0.6
3,529,308 - Psest_3358 0.67 +2.1
3,529,308 - Psest_3358 0.67 +0.8
3,529,308 - Psest_3358 0.67 +1.8
3,529,308 - Psest_3358 0.67 +1.2
3,529,427 + Psest_3358 0.83 +1.6
3,529,427 + Psest_3358 0.83 +0.5
3,529,427 + Psest_3358 0.83 -0.4
3,529,427 + Psest_3358 0.83 +2.2
3,529,427 + Psest_3358 0.83 +0.2
3,529,427 + Psest_3358 0.83 +1.6
3,529,427 + Psest_3358 0.83 +0.6
3,529,427 + Psest_3358 0.83 -1.0
3,529,428 - Psest_3358 0.83 -0.5
3,529,428 - Psest_3358 0.83 -0.7
3,529,428 - Psest_3358 0.83 +0.7
3,529,428 - Psest_3358 0.83 -0.3
3,529,428 - Psest_3358 0.83 +1.4
3,529,428 - Psest_3358 0.83 -0.2
3,529,428 - Psest_3358 0.83 -1.6
3,529,428 - Psest_3358 0.83 +1.9
3,529,428 - Psest_3358 0.83 -0.3
3,529,428 - Psest_3358 0.83 +1.9

Or see this region's nucleotide sequence