Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2145

Experiment: Furfuryl Alcohol 0.3 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_2144 and Psest_2145 are separated by 99 nucleotidesPsest_2145 and Psest_2146 are separated by 229 nucleotides Psest_2144: Psest_2144 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 2,287,076 to 2,290,246 _2144 Psest_2145: Psest_2145 - RND family efflux transporter, MFP subunit, at 2,290,346 to 2,291,575 _2145 Psest_2146: Psest_2146 - Transcriptional regulator, at 2,291,805 to 2,292,722 _2146 Position (kb) 2290 2291 2292Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2289.772 kb on - strand, within Psest_2144at 2289.783 kb on + strand, within Psest_2144at 2289.783 kb on + strand, within Psest_2144at 2289.784 kb on - strand, within Psest_2144at 2289.784 kb on - strand, within Psest_2144at 2289.784 kb on - strand, within Psest_2144at 2289.784 kb on - strand, within Psest_2144at 2290.011 kb on + strandat 2290.011 kb on + strandat 2290.011 kb on + strandat 2290.011 kb on + strandat 2290.011 kb on + strandat 2290.011 kb on + strandat 2290.011 kb on + strandat 2290.011 kb on + strandat 2290.011 kb on + strandat 2290.011 kb on + strandat 2290.012 kb on - strandat 2290.012 kb on - strandat 2290.012 kb on - strandat 2290.012 kb on - strandat 2290.012 kb on - strandat 2290.012 kb on - strandat 2290.343 kb on + strandat 2290.343 kb on + strandat 2290.347 kb on + strandat 2290.347 kb on + strandat 2290.347 kb on + strandat 2290.348 kb on - strandat 2290.348 kb on - strandat 2290.348 kb on - strandat 2290.683 kb on + strand, within Psest_2145at 2290.683 kb on + strand, within Psest_2145at 2290.684 kb on - strand, within Psest_2145at 2290.858 kb on - strand, within Psest_2145at 2290.905 kb on + strand, within Psest_2145at 2290.905 kb on + strand, within Psest_2145at 2290.906 kb on - strand, within Psest_2145at 2290.914 kb on + strand, within Psest_2145at 2290.914 kb on + strand, within Psest_2145at 2290.914 kb on + strand, within Psest_2145at 2290.914 kb on + strand, within Psest_2145at 2290.915 kb on - strand, within Psest_2145at 2290.938 kb on + strand, within Psest_2145at 2290.938 kb on + strand, within Psest_2145at 2290.938 kb on + strand, within Psest_2145at 2290.939 kb on - strand, within Psest_2145at 2290.939 kb on - strand, within Psest_2145at 2290.944 kb on + strand, within Psest_2145at 2290.944 kb on + strand, within Psest_2145at 2290.944 kb on + strand, within Psest_2145at 2290.944 kb on + strand, within Psest_2145at 2290.945 kb on - strand, within Psest_2145at 2290.945 kb on - strand, within Psest_2145at 2290.945 kb on - strand, within Psest_2145at 2290.945 kb on - strand, within Psest_2145at 2290.945 kb on - strand, within Psest_2145at 2291.661 kb on + strandat 2291.661 kb on + strandat 2291.749 kb on - strandat 2292.100 kb on + strand, within Psest_2146at 2292.101 kb on - strand, within Psest_2146at 2292.151 kb on + strand, within Psest_2146at 2292.219 kb on + strand, within Psest_2146at 2292.219 kb on + strand, within Psest_2146at 2292.219 kb on + strand, within Psest_2146at 2292.220 kb on - strand, within Psest_2146at 2292.256 kb on + strand, within Psest_2146at 2292.310 kb on + strand, within Psest_2146at 2292.311 kb on - strand, within Psest_2146at 2292.311 kb on - strand, within Psest_2146at 2292.311 kb on - strand, within Psest_2146at 2292.459 kb on - strand, within Psest_2146at 2292.470 kb on + strand, within Psest_2146

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.3 vol%
remove
2,289,772 - Psest_2144 0.85 +0.3
2,289,783 + Psest_2144 0.85 +0.4
2,289,783 + Psest_2144 0.85 -1.3
2,289,784 - Psest_2144 0.85 -1.1
2,289,784 - Psest_2144 0.85 -0.9
2,289,784 - Psest_2144 0.85 -0.8
2,289,784 - Psest_2144 0.85 +0.4
2,290,011 + +0.1
2,290,011 + +0.8
2,290,011 + +0.6
2,290,011 + -1.2
2,290,011 + +1.1
2,290,011 + +3.5
2,290,011 + -0.3
2,290,011 + -1.2
2,290,011 + -1.9
2,290,011 + -0.3
2,290,012 - -1.3
2,290,012 - +1.9
2,290,012 - -0.3
2,290,012 - -1.2
2,290,012 - +1.6
2,290,012 - -1.1
2,290,343 + +0.8
2,290,343 + +0.8
2,290,347 + +1.2
2,290,347 + +0.2
2,290,347 + -1.7
2,290,348 - -1.1
2,290,348 - +0.2
2,290,348 - +0.6
2,290,683 + Psest_2145 0.27 +0.2
2,290,683 + Psest_2145 0.27 -0.4
2,290,684 - Psest_2145 0.27 +1.4
2,290,858 - Psest_2145 0.42 +1.5
2,290,905 + Psest_2145 0.45 -1.3
2,290,905 + Psest_2145 0.45 +0.7
2,290,906 - Psest_2145 0.46 +0.3
2,290,914 + Psest_2145 0.46 +1.0
2,290,914 + Psest_2145 0.46 -0.0
2,290,914 + Psest_2145 0.46 -1.7
2,290,914 + Psest_2145 0.46 -0.6
2,290,915 - Psest_2145 0.46 -0.3
2,290,938 + Psest_2145 0.48 -1.2
2,290,938 + Psest_2145 0.48 +0.1
2,290,938 + Psest_2145 0.48 +1.0
2,290,939 - Psest_2145 0.48 +0.4
2,290,939 - Psest_2145 0.48 -0.8
2,290,944 + Psest_2145 0.49 -0.4
2,290,944 + Psest_2145 0.49 -0.5
2,290,944 + Psest_2145 0.49 +0.4
2,290,944 + Psest_2145 0.49 +0.1
2,290,945 - Psest_2145 0.49 +0.5
2,290,945 - Psest_2145 0.49 -0.3
2,290,945 - Psest_2145 0.49 -0.3
2,290,945 - Psest_2145 0.49 +1.6
2,290,945 - Psest_2145 0.49 -2.5
2,291,661 + -0.7
2,291,661 + +0.8
2,291,749 - +2.3
2,292,100 + Psest_2146 0.32 -0.5
2,292,101 - Psest_2146 0.32 -0.2
2,292,151 + Psest_2146 0.38 -2.2
2,292,219 + Psest_2146 0.45 -2.2
2,292,219 + Psest_2146 0.45 -1.3
2,292,219 + Psest_2146 0.45 -2.7
2,292,220 - Psest_2146 0.45 -1.4
2,292,256 + Psest_2146 0.49 -2.3
2,292,310 + Psest_2146 0.55 -1.6
2,292,311 - Psest_2146 0.55 -1.2
2,292,311 - Psest_2146 0.55 +0.3
2,292,311 - Psest_2146 0.55 -0.4
2,292,459 - Psest_2146 0.71 +0.3
2,292,470 + Psest_2146 0.72 +0.5

Or see this region's nucleotide sequence