Experiment: Furfuryl Alcohol 0.3 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1759 and Psest_1760 are separated by 1 nucleotides Psest_1760 and Psest_1761 overlap by 4 nucleotides Psest_1761 and Psest_1762 overlap by 4 nucleotides Psest_1762 and Psest_1763 are separated by 18 nucleotides Psest_1763 and Psest_1764 are separated by 143 nucleotides
Psest_1759: Psest_1759 - c-type cytochrome biogenesis protein CcmF, at 1,860,339 to 1,862,312
_1759
Psest_1760: Psest_1760 - periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily, at 1,862,314 to 1,862,844
_1760
Psest_1761: Psest_1761 - Uncharacterized protein involved in biosynthesis of c-type cytochromes, at 1,862,841 to 1,863,314
_1761
Psest_1762: Psest_1762 - cytochrome c-type biogenesis protein CcmI, at 1,863,311 to 1,864,519
_1762
Psest_1763: Psest_1763 - hypothetical protein, at 1,864,538 to 1,864,978
_1763
Psest_1764: Psest_1764 - hypothetical protein, at 1,865,122 to 1,865,418
_1764
Position (kb)
1863
1864
1865 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 1864.053 kb on + strand, within Psest_1762 at 1864.314 kb on + strand, within Psest_1762 at 1864.315 kb on - strand, within Psest_1762 at 1864.533 kb on + strand at 1864.533 kb on + strand at 1864.569 kb on + strand at 1864.569 kb on + strand at 1864.569 kb on + strand at 1864.569 kb on + strand at 1864.570 kb on - strand at 1864.570 kb on - strand at 1864.570 kb on - strand at 1864.756 kb on + strand, within Psest_1763 at 1864.800 kb on + strand, within Psest_1763 at 1864.800 kb on + strand, within Psest_1763 at 1864.801 kb on - strand, within Psest_1763 at 1864.833 kb on - strand, within Psest_1763 at 1864.874 kb on + strand, within Psest_1763 at 1864.875 kb on - strand, within Psest_1763 at 1864.877 kb on + strand, within Psest_1763 at 1865.003 kb on + strand at 1865.016 kb on - strand at 1865.409 kb on - strand at 1865.423 kb on + strand at 1865.424 kb on - strand at 1865.424 kb on - strand at 1865.424 kb on - strand at 1865.424 kb on - strand at 1865.460 kb on + strand at 1865.460 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.3 vol% remove 1,864,053 + Psest_1762 0.61 -2.0 1,864,314 + Psest_1762 0.83 -0.5 1,864,315 - Psest_1762 0.83 -0.6 1,864,533 + +0.5 1,864,533 + +1.5 1,864,569 + -0.3 1,864,569 + +1.9 1,864,569 + +0.6 1,864,569 + +0.6 1,864,570 - +0.9 1,864,570 - -0.1 1,864,570 - -0.2 1,864,756 + Psest_1763 0.49 +5.7 1,864,800 + Psest_1763 0.59 +0.3 1,864,800 + Psest_1763 0.59 +0.2 1,864,801 - Psest_1763 0.60 -1.4 1,864,833 - Psest_1763 0.67 +0.3 1,864,874 + Psest_1763 0.76 -0.1 1,864,875 - Psest_1763 0.76 -1.4 1,864,877 + Psest_1763 0.77 -1.4 1,865,003 + -0.6 1,865,016 - +0.1 1,865,409 - +1.7 1,865,423 + +0.7 1,865,424 - +1.7 1,865,424 - -0.2 1,865,424 - -2.8 1,865,424 - -1.7 1,865,460 + +1.9 1,865,460 + -1.4
Or see this region's nucleotide sequence