Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0765

Experiment: Furfuryl Alcohol 0.2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0764 and Psest_0765 are separated by 409 nucleotidesPsest_0765 and Psest_0766 are separated by 12 nucleotidesPsest_0766 and Psest_0767 are separated by 213 nucleotides Psest_0764: Psest_0764 - diguanylate cyclase (GGDEF) domain, at 833,304 to 834,860 _0764 Psest_0765: Psest_0765 - hypothetical protein, at 835,270 to 835,599 _0765 Psest_0766: Psest_0766 - hypothetical protein, at 835,612 to 836,016 _0766 Psest_0767: Psest_0767 - diguanylate cyclase (GGDEF) domain, at 836,230 to 837,636 _0767 Position (kb) 835 836Strain fitness (log2 ratio) -2 -1 0 1 2at 834.284 kb on - strand, within Psest_0764at 834.379 kb on + strand, within Psest_0764at 834.379 kb on + strand, within Psest_0764at 834.379 kb on + strand, within Psest_0764at 834.379 kb on + strand, within Psest_0764at 834.379 kb on + strand, within Psest_0764at 834.379 kb on + strand, within Psest_0764at 834.379 kb on + strand, within Psest_0764at 834.379 kb on + strand, within Psest_0764at 834.379 kb on + strand, within Psest_0764at 834.379 kb on + strand, within Psest_0764at 834.380 kb on - strand, within Psest_0764at 834.380 kb on - strand, within Psest_0764at 834.380 kb on - strand, within Psest_0764at 834.380 kb on - strand, within Psest_0764at 834.380 kb on - strand, within Psest_0764at 834.380 kb on - strand, within Psest_0764at 834.380 kb on - strand, within Psest_0764at 834.380 kb on - strand, within Psest_0764at 834.380 kb on - strand, within Psest_0764at 834.380 kb on - strand, within Psest_0764at 834.380 kb on - strand, within Psest_0764at 834.380 kb on - strand, within Psest_0764at 834.380 kb on - strand, within Psest_0764at 834.380 kb on - strand, within Psest_0764at 834.380 kb on - strand, within Psest_0764at 834.380 kb on - strand, within Psest_0764at 834.380 kb on - strand, within Psest_0764at 834.380 kb on - strand, within Psest_0764at 834.380 kb on - strand, within Psest_0764at 834.380 kb on - strand, within Psest_0764at 834.380 kb on - strand, within Psest_0764at 834.409 kb on + strand, within Psest_0764at 834.519 kb on + strand, within Psest_0764at 834.539 kb on - strand, within Psest_0764at 834.580 kb on + strand, within Psest_0764at 834.580 kb on + strand, within Psest_0764at 834.580 kb on + strand, within Psest_0764at 834.580 kb on + strand, within Psest_0764at 834.580 kb on + strand, within Psest_0764at 834.581 kb on - strand, within Psest_0764at 834.581 kb on - strand, within Psest_0764at 834.581 kb on - strand, within Psest_0764at 834.581 kb on - strand, within Psest_0764at 834.581 kb on - strand, within Psest_0764at 834.581 kb on - strand, within Psest_0764at 834.581 kb on - strand, within Psest_0764at 834.581 kb on - strand, within Psest_0764at 834.695 kb on + strand, within Psest_0764at 834.732 kb on + strandat 834.864 kb on + strandat 834.881 kb on + strandat 834.896 kb on - strandat 834.921 kb on + strandat 835.005 kb on + strandat 835.006 kb on - strandat 835.122 kb on + strandat 835.282 kb on + strandat 835.282 kb on + strandat 835.282 kb on + strandat 835.282 kb on + strandat 835.282 kb on + strandat 835.282 kb on + strandat 835.282 kb on + strandat 835.282 kb on + strandat 835.282 kb on + strandat 835.283 kb on - strandat 835.283 kb on - strandat 835.283 kb on - strandat 835.283 kb on - strandat 835.354 kb on + strand, within Psest_0765at 835.354 kb on + strand, within Psest_0765at 835.355 kb on - strand, within Psest_0765at 835.357 kb on - strand, within Psest_0765at 835.357 kb on - strand, within Psest_0765at 835.357 kb on - strand, within Psest_0765at 835.502 kb on + strand, within Psest_0765at 835.502 kb on + strand, within Psest_0765at 835.503 kb on - strand, within Psest_0765at 835.565 kb on + strand, within Psest_0765at 835.566 kb on - strand, within Psest_0765at 835.569 kb on + strandat 835.570 kb on - strandat 835.682 kb on + strand, within Psest_0766at 836.235 kb on + strandat 836.235 kb on + strandat 836.267 kb on - strandat 836.267 kb on - strandat 836.418 kb on + strand, within Psest_0767at 836.418 kb on + strand, within Psest_0767at 836.418 kb on + strand, within Psest_0767at 836.419 kb on - strand, within Psest_0767at 836.474 kb on + strand, within Psest_0767

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.2 vol%
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834,284 - Psest_0764 0.63 +0.7
834,379 + Psest_0764 0.69 +0.2
834,379 + Psest_0764 0.69 -1.9
834,379 + Psest_0764 0.69 -1.3
834,379 + Psest_0764 0.69 -0.8
834,379 + Psest_0764 0.69 -1.6
834,379 + Psest_0764 0.69 -0.0
834,379 + Psest_0764 0.69 -1.4
834,379 + Psest_0764 0.69 +0.0
834,379 + Psest_0764 0.69 +1.4
834,379 + Psest_0764 0.69 -0.5
834,380 - Psest_0764 0.69 -0.0
834,380 - Psest_0764 0.69 -0.3
834,380 - Psest_0764 0.69 +1.1
834,380 - Psest_0764 0.69 -0.9
834,380 - Psest_0764 0.69 -0.5
834,380 - Psest_0764 0.69 +0.2
834,380 - Psest_0764 0.69 -0.8
834,380 - Psest_0764 0.69 +1.1
834,380 - Psest_0764 0.69 +0.6
834,380 - Psest_0764 0.69 +0.3
834,380 - Psest_0764 0.69 +1.4
834,380 - Psest_0764 0.69 +0.2
834,380 - Psest_0764 0.69 +1.0
834,380 - Psest_0764 0.69 -0.4
834,380 - Psest_0764 0.69 +0.5
834,380 - Psest_0764 0.69 +0.2
834,380 - Psest_0764 0.69 -1.8
834,380 - Psest_0764 0.69 -0.5
834,380 - Psest_0764 0.69 +1.3
834,380 - Psest_0764 0.69 -0.1
834,380 - Psest_0764 0.69 -0.1
834,409 + Psest_0764 0.71 +0.8
834,519 + Psest_0764 0.78 +0.4
834,539 - Psest_0764 0.79 -1.7
834,580 + Psest_0764 0.82 -1.2
834,580 + Psest_0764 0.82 +0.3
834,580 + Psest_0764 0.82 -1.3
834,580 + Psest_0764 0.82 -2.0
834,580 + Psest_0764 0.82 -0.4
834,581 - Psest_0764 0.82 -1.0
834,581 - Psest_0764 0.82 +0.2
834,581 - Psest_0764 0.82 +1.1
834,581 - Psest_0764 0.82 +0.1
834,581 - Psest_0764 0.82 +1.2
834,581 - Psest_0764 0.82 +1.6
834,581 - Psest_0764 0.82 -1.4
834,581 - Psest_0764 0.82 -0.7
834,695 + Psest_0764 0.89 -2.0
834,732 + +2.0
834,864 + -1.1
834,881 + +0.9
834,896 - -0.4
834,921 + -2.6
835,005 + +0.4
835,006 - -0.4
835,122 + +1.2
835,282 + +1.2
835,282 + +1.1
835,282 + +0.3
835,282 + +1.1
835,282 + +0.6
835,282 + -1.0
835,282 + +1.1
835,282 + -0.9
835,282 + -0.3
835,283 - -0.2
835,283 - -0.8
835,283 - -1.0
835,283 - -0.9
835,354 + Psest_0765 0.25 -0.5
835,354 + Psest_0765 0.25 +0.5
835,355 - Psest_0765 0.26 -1.7
835,357 - Psest_0765 0.26 -0.3
835,357 - Psest_0765 0.26 -0.8
835,357 - Psest_0765 0.26 -2.0
835,502 + Psest_0765 0.70 -0.4
835,502 + Psest_0765 0.70 -0.0
835,503 - Psest_0765 0.71 -0.9
835,565 + Psest_0765 0.89 -0.1
835,566 - Psest_0765 0.90 -1.7
835,569 + -0.3
835,570 - +1.8
835,682 + Psest_0766 0.17 -0.3
836,235 + +1.3
836,235 + -1.2
836,267 - +2.3
836,267 - -1.0
836,418 + Psest_0767 0.13 -0.1
836,418 + Psest_0767 0.13 +2.0
836,418 + Psest_0767 0.13 +1.6
836,419 - Psest_0767 0.13 -0.6
836,474 + Psest_0767 0.17 +1.1

Or see this region's nucleotide sequence