Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0399

Experiment: Furfuryl Alcohol 0.2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0398 and Psest_0399 are separated by 134 nucleotidesPsest_0399 and Psest_0400 are separated by 105 nucleotides Psest_0398: Psest_0398 - NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain, at 430,881 to 432,626 _0398 Psest_0399: Psest_0399 - Acyl-CoA dehydrogenases, at 432,761 to 434,575 _0399 Psest_0400: Psest_0400 - Geranylgeranyl pyrophosphate synthase, at 434,681 to 435,571 _0400 Position (kb) 432 433 434 435Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 431.878 kb on + strand, within Psest_0398at 431.878 kb on + strand, within Psest_0398at 431.878 kb on + strand, within Psest_0398at 431.878 kb on + strand, within Psest_0398at 431.878 kb on + strand, within Psest_0398at 431.879 kb on - strand, within Psest_0398at 431.879 kb on - strand, within Psest_0398at 431.879 kb on - strand, within Psest_0398at 431.879 kb on - strand, within Psest_0398at 431.879 kb on - strand, within Psest_0398at 431.879 kb on - strand, within Psest_0398at 431.879 kb on - strand, within Psest_0398at 431.879 kb on - strand, within Psest_0398at 431.879 kb on - strand, within Psest_0398at 432.438 kb on - strand, within Psest_0398at 432.687 kb on - strandat 432.741 kb on + strandat 432.750 kb on + strandat 432.750 kb on + strandat 432.750 kb on + strandat 432.750 kb on + strandat 432.751 kb on - strandat 432.751 kb on - strandat 432.762 kb on + strandat 432.762 kb on + strandat 432.762 kb on + strandat 432.763 kb on - strandat 432.763 kb on - strandat 432.858 kb on + strandat 432.858 kb on + strandat 432.859 kb on - strandat 432.859 kb on - strandat 432.886 kb on - strandat 432.886 kb on - strandat 432.990 kb on + strand, within Psest_0399at 432.990 kb on + strand, within Psest_0399at 432.990 kb on + strand, within Psest_0399at 432.990 kb on + strand, within Psest_0399at 432.990 kb on + strand, within Psest_0399at 432.990 kb on + strand, within Psest_0399at 432.990 kb on + strand, within Psest_0399at 432.990 kb on + strand, within Psest_0399at 432.991 kb on - strand, within Psest_0399at 432.991 kb on - strand, within Psest_0399at 433.272 kb on + strand, within Psest_0399at 433.272 kb on + strand, within Psest_0399at 433.273 kb on - strand, within Psest_0399at 433.350 kb on + strand, within Psest_0399at 433.350 kb on + strand, within Psest_0399at 433.351 kb on - strand, within Psest_0399at 433.351 kb on - strand, within Psest_0399at 433.351 kb on - strand, within Psest_0399at 433.351 kb on - strand, within Psest_0399at 433.351 kb on - strand, within Psest_0399at 433.494 kb on + strand, within Psest_0399at 433.494 kb on + strand, within Psest_0399at 433.494 kb on + strand, within Psest_0399at 433.494 kb on + strand, within Psest_0399at 433.494 kb on + strand, within Psest_0399at 433.494 kb on + strand, within Psest_0399at 433.495 kb on - strand, within Psest_0399at 433.495 kb on - strand, within Psest_0399at 433.495 kb on - strand, within Psest_0399at 433.495 kb on - strand, within Psest_0399at 433.620 kb on + strand, within Psest_0399at 433.632 kb on + strand, within Psest_0399at 433.710 kb on + strand, within Psest_0399at 433.710 kb on + strand, within Psest_0399at 433.710 kb on + strand, within Psest_0399at 433.710 kb on + strand, within Psest_0399at 433.710 kb on + strand, within Psest_0399at 433.711 kb on - strand, within Psest_0399at 433.711 kb on - strand, within Psest_0399at 433.711 kb on - strand, within Psest_0399at 433.711 kb on - strand, within Psest_0399at 433.711 kb on - strand, within Psest_0399at 434.421 kb on + strandat 434.422 kb on - strandat 434.422 kb on - strandat 434.422 kb on - strandat 434.529 kb on + strandat 434.529 kb on + strandat 434.606 kb on + strandat 434.606 kb on + strandat 434.630 kb on + strandat 435.086 kb on + strand, within Psest_0400at 435.086 kb on + strand, within Psest_0400at 435.086 kb on + strand, within Psest_0400at 435.086 kb on + strand, within Psest_0400at 435.086 kb on + strand, within Psest_0400at 435.087 kb on - strand, within Psest_0400at 435.377 kb on + strand, within Psest_0400at 435.377 kb on + strand, within Psest_0400at 435.386 kb on + strand, within Psest_0400at 435.386 kb on + strand, within Psest_0400at 435.454 kb on + strand, within Psest_0400at 435.455 kb on - strand, within Psest_0400

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.2 vol%
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431,878 + Psest_0398 0.57 -4.0
431,878 + Psest_0398 0.57 -1.7
431,878 + Psest_0398 0.57 -2.8
431,878 + Psest_0398 0.57 -2.3
431,878 + Psest_0398 0.57 -1.0
431,879 - Psest_0398 0.57 -2.1
431,879 - Psest_0398 0.57 -1.9
431,879 - Psest_0398 0.57 -2.8
431,879 - Psest_0398 0.57 -2.5
431,879 - Psest_0398 0.57 -1.5
431,879 - Psest_0398 0.57 -3.8
431,879 - Psest_0398 0.57 -2.8
431,879 - Psest_0398 0.57 -3.3
431,879 - Psest_0398 0.57 -2.9
432,438 - Psest_0398 0.89 -5.4
432,687 - +1.0
432,741 + -1.4
432,750 + +1.2
432,750 + +0.4
432,750 + -0.1
432,750 + -0.0
432,751 - -0.2
432,751 - -0.4
432,762 + -0.6
432,762 + +0.6
432,762 + +0.4
432,763 - -0.7
432,763 - -1.4
432,858 + +0.8
432,858 + -1.6
432,859 - +0.5
432,859 - -0.2
432,886 - -1.0
432,886 - +0.3
432,990 + Psest_0399 0.13 -0.7
432,990 + Psest_0399 0.13 +0.6
432,990 + Psest_0399 0.13 -2.4
432,990 + Psest_0399 0.13 -0.4
432,990 + Psest_0399 0.13 +0.5
432,990 + Psest_0399 0.13 -0.4
432,990 + Psest_0399 0.13 -0.5
432,990 + Psest_0399 0.13 -1.1
432,991 - Psest_0399 0.13 -1.2
432,991 - Psest_0399 0.13 -0.0
433,272 + Psest_0399 0.28 +0.2
433,272 + Psest_0399 0.28 -1.0
433,273 - Psest_0399 0.28 -1.0
433,350 + Psest_0399 0.32 +1.5
433,350 + Psest_0399 0.32 +0.2
433,351 - Psest_0399 0.33 +0.0
433,351 - Psest_0399 0.33 -0.1
433,351 - Psest_0399 0.33 -0.1
433,351 - Psest_0399 0.33 -1.8
433,351 - Psest_0399 0.33 -1.1
433,494 + Psest_0399 0.40 -0.1
433,494 + Psest_0399 0.40 +0.1
433,494 + Psest_0399 0.40 +0.7
433,494 + Psest_0399 0.40 +1.0
433,494 + Psest_0399 0.40 -2.7
433,494 + Psest_0399 0.40 +0.5
433,495 - Psest_0399 0.40 -1.4
433,495 - Psest_0399 0.40 +1.2
433,495 - Psest_0399 0.40 -1.1
433,495 - Psest_0399 0.40 +0.2
433,620 + Psest_0399 0.47 +2.5
433,632 + Psest_0399 0.48 -0.5
433,710 + Psest_0399 0.52 -2.5
433,710 + Psest_0399 0.52 -1.1
433,710 + Psest_0399 0.52 -0.2
433,710 + Psest_0399 0.52 -1.4
433,710 + Psest_0399 0.52 -0.6
433,711 - Psest_0399 0.52 -1.3
433,711 - Psest_0399 0.52 +1.1
433,711 - Psest_0399 0.52 -0.7
433,711 - Psest_0399 0.52 -0.1
433,711 - Psest_0399 0.52 -0.7
434,421 + +0.6
434,422 - -0.5
434,422 - +1.9
434,422 - +1.2
434,529 + +0.1
434,529 + -2.7
434,606 + -0.4
434,606 + -0.8
434,630 + -2.4
435,086 + Psest_0400 0.45 +0.5
435,086 + Psest_0400 0.45 +0.9
435,086 + Psest_0400 0.45 -0.0
435,086 + Psest_0400 0.45 +0.4
435,086 + Psest_0400 0.45 -0.6
435,087 - Psest_0400 0.46 +0.5
435,377 + Psest_0400 0.78 -1.8
435,377 + Psest_0400 0.78 +0.1
435,386 + Psest_0400 0.79 -1.9
435,386 + Psest_0400 0.79 +0.3
435,454 + Psest_0400 0.87 -0.6
435,455 - Psest_0400 0.87 -0.6

Or see this region's nucleotide sequence