Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2428

Experiment: Furfuryl Alcohol 0.2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2427 and Psest_2428 are separated by 7 nucleotidesPsest_2428 and Psest_2429 overlap by 4 nucleotidesPsest_2429 and Psest_2430 are separated by 194 nucleotides Psest_2427: Psest_2427 - SH3 domain protein, at 2,592,562 to 2,593,236 _2427 Psest_2428: Psest_2428 - hypothetical protein, at 2,593,244 to 2,593,555 _2428 Psest_2429: Psest_2429 - Predicted branched-chain amino acid permease (azaleucine resistance), at 2,593,552 to 2,594,169 _2429 Psest_2430: Psest_2430 - AraC-type DNA-binding domain-containing proteins, at 2,594,364 to 2,595,170 _2430 Position (kb) 2593 2594Strain fitness (log2 ratio) -2 -1 0 1 2at 2592.569 kb on + strandat 2592.569 kb on + strandat 2592.569 kb on + strandat 2592.569 kb on + strandat 2592.569 kb on + strandat 2592.570 kb on - strandat 2592.570 kb on - strandat 2592.570 kb on - strandat 2592.570 kb on - strandat 2592.723 kb on + strand, within Psest_2427at 2592.723 kb on + strand, within Psest_2427at 2592.723 kb on + strand, within Psest_2427at 2592.817 kb on + strand, within Psest_2427at 2592.971 kb on + strand, within Psest_2427at 2592.972 kb on - strand, within Psest_2427at 2593.135 kb on + strand, within Psest_2427at 2593.135 kb on + strand, within Psest_2427at 2593.135 kb on + strand, within Psest_2427at 2593.135 kb on + strand, within Psest_2427at 2593.135 kb on + strand, within Psest_2427at 2593.136 kb on - strand, within Psest_2427at 2593.136 kb on - strand, within Psest_2427at 2593.136 kb on - strand, within Psest_2427at 2593.136 kb on - strand, within Psest_2427at 2593.136 kb on - strand, within Psest_2427at 2593.136 kb on - strand, within Psest_2427at 2593.136 kb on - strand, within Psest_2427at 2593.136 kb on - strand, within Psest_2427at 2593.136 kb on - strand, within Psest_2427at 2593.136 kb on - strand, within Psest_2427at 2593.242 kb on + strandat 2593.255 kb on - strandat 2593.255 kb on - strandat 2593.255 kb on - strandat 2593.269 kb on + strandat 2593.269 kb on + strandat 2593.269 kb on + strandat 2593.269 kb on + strandat 2593.270 kb on - strandat 2593.272 kb on + strandat 2593.272 kb on + strandat 2593.272 kb on + strandat 2593.272 kb on + strandat 2593.272 kb on + strandat 2593.273 kb on - strandat 2593.273 kb on - strandat 2593.273 kb on - strandat 2593.273 kb on - strandat 2593.273 kb on - strandat 2593.273 kb on - strandat 2593.273 kb on - strandat 2593.273 kb on - strandat 2593.273 kb on - strandat 2593.302 kb on - strand, within Psest_2428at 2593.398 kb on + strand, within Psest_2428at 2593.398 kb on + strand, within Psest_2428at 2593.399 kb on - strand, within Psest_2428at 2593.399 kb on - strand, within Psest_2428at 2593.399 kb on - strand, within Psest_2428at 2593.399 kb on - strand, within Psest_2428at 2593.399 kb on - strand, within Psest_2428at 2593.610 kb on + strandat 2593.611 kb on - strandat 2593.611 kb on - strandat 2593.611 kb on - strandat 2593.794 kb on + strand, within Psest_2429at 2593.794 kb on + strand, within Psest_2429at 2593.795 kb on - strand, within Psest_2429at 2593.795 kb on - strand, within Psest_2429at 2593.795 kb on - strand, within Psest_2429at 2593.795 kb on - strand, within Psest_2429at 2593.795 kb on - strand, within Psest_2429at 2593.795 kb on - strand, within Psest_2429at 2593.911 kb on - strand, within Psest_2429at 2593.911 kb on - strand, within Psest_2429at 2593.911 kb on - strand, within Psest_2429at 2594.211 kb on + strandat 2594.211 kb on + strandat 2594.211 kb on + strandat 2594.211 kb on + strandat 2594.211 kb on + strandat 2594.211 kb on + strandat 2594.211 kb on + strandat 2594.211 kb on + strandat 2594.211 kb on + strandat 2594.211 kb on + strandat 2594.211 kb on + strandat 2594.211 kb on + strandat 2594.211 kb on + strandat 2594.212 kb on - strandat 2594.212 kb on - strandat 2594.212 kb on - strandat 2594.212 kb on - strandat 2594.212 kb on - strandat 2594.212 kb on - strandat 2594.212 kb on - strandat 2594.212 kb on - strandat 2594.212 kb on - strandat 2594.212 kb on - strandat 2594.212 kb on - strandat 2594.213 kb on + strandat 2594.213 kb on + strandat 2594.213 kb on + strandat 2594.213 kb on + strandat 2594.213 kb on + strandat 2594.214 kb on - strandat 2594.436 kb on - strandat 2594.536 kb on + strand, within Psest_2430

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.2 vol%
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2,592,569 + -1.7
2,592,569 + +0.5
2,592,569 + -0.0
2,592,569 + +1.0
2,592,569 + -0.3
2,592,570 - -0.4
2,592,570 - -0.6
2,592,570 - -0.8
2,592,570 - -0.7
2,592,723 + Psest_2427 0.24 +0.1
2,592,723 + Psest_2427 0.24 +0.8
2,592,723 + Psest_2427 0.24 -0.9
2,592,817 + Psest_2427 0.38 +1.2
2,592,971 + Psest_2427 0.61 +0.1
2,592,972 - Psest_2427 0.61 -1.3
2,593,135 + Psest_2427 0.85 +1.1
2,593,135 + Psest_2427 0.85 +2.0
2,593,135 + Psest_2427 0.85 +0.5
2,593,135 + Psest_2427 0.85 +0.7
2,593,135 + Psest_2427 0.85 -0.8
2,593,136 - Psest_2427 0.85 -0.4
2,593,136 - Psest_2427 0.85 -1.0
2,593,136 - Psest_2427 0.85 -0.4
2,593,136 - Psest_2427 0.85 +0.6
2,593,136 - Psest_2427 0.85 +0.8
2,593,136 - Psest_2427 0.85 +0.4
2,593,136 - Psest_2427 0.85 +1.3
2,593,136 - Psest_2427 0.85 -0.8
2,593,136 - Psest_2427 0.85 -1.5
2,593,136 - Psest_2427 0.85 -0.9
2,593,242 + +0.6
2,593,255 - +0.3
2,593,255 - -1.2
2,593,255 - -2.2
2,593,269 + +1.5
2,593,269 + +1.8
2,593,269 + +1.4
2,593,269 + -1.5
2,593,270 - +0.7
2,593,272 + +1.3
2,593,272 + +0.1
2,593,272 + -0.5
2,593,272 + +0.7
2,593,272 + -1.3
2,593,273 - +1.4
2,593,273 - -0.3
2,593,273 - +0.8
2,593,273 - +1.3
2,593,273 - -1.5
2,593,273 - -0.0
2,593,273 - -0.0
2,593,273 - -0.7
2,593,273 - -0.4
2,593,302 - Psest_2428 0.19 -1.8
2,593,398 + Psest_2428 0.49 -0.1
2,593,398 + Psest_2428 0.49 -0.6
2,593,399 - Psest_2428 0.50 -0.4
2,593,399 - Psest_2428 0.50 +0.1
2,593,399 - Psest_2428 0.50 -1.1
2,593,399 - Psest_2428 0.50 +0.3
2,593,399 - Psest_2428 0.50 -1.2
2,593,610 + -0.3
2,593,611 - -1.0
2,593,611 - +0.5
2,593,611 - +1.0
2,593,794 + Psest_2429 0.39 -1.0
2,593,794 + Psest_2429 0.39 +0.6
2,593,795 - Psest_2429 0.39 +0.9
2,593,795 - Psest_2429 0.39 +0.4
2,593,795 - Psest_2429 0.39 -0.2
2,593,795 - Psest_2429 0.39 -0.0
2,593,795 - Psest_2429 0.39 -0.9
2,593,795 - Psest_2429 0.39 +0.7
2,593,911 - Psest_2429 0.58 -1.1
2,593,911 - Psest_2429 0.58 -0.2
2,593,911 - Psest_2429 0.58 +0.4
2,594,211 + +1.6
2,594,211 + -0.5
2,594,211 + -0.5
2,594,211 + +0.8
2,594,211 + -1.2
2,594,211 + +0.2
2,594,211 + +1.9
2,594,211 + +1.3
2,594,211 + -0.7
2,594,211 + +0.8
2,594,211 + -0.4
2,594,211 + +1.8
2,594,211 + -0.5
2,594,212 - +0.6
2,594,212 - +0.9
2,594,212 - -0.1
2,594,212 - -0.2
2,594,212 - +0.7
2,594,212 - -0.3
2,594,212 - +0.4
2,594,212 - +1.0
2,594,212 - -1.4
2,594,212 - +0.8
2,594,212 - +0.4
2,594,213 + -1.0
2,594,213 + -0.9
2,594,213 + -0.8
2,594,213 + +0.0
2,594,213 + +0.5
2,594,214 - +0.6
2,594,436 - +0.2
2,594,536 + Psest_2430 0.21 +0.9

Or see this region's nucleotide sequence