Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2347

Experiment: Furfuryl Alcohol 0.2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2346 and Psest_2347 overlap by 4 nucleotidesPsest_2347 and Psest_2348 are separated by 1 nucleotidesPsest_2348 and Psest_2349 are separated by 11 nucleotides Psest_2346: Psest_2346 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 2,500,071 to 2,500,961 _2346 Psest_2347: Psest_2347 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 2,500,958 to 2,501,845 _2347 Psest_2348: Psest_2348 - urea carboxylase-associated protein 2, at 2,501,847 to 2,502,575 _2348 Psest_2349: Psest_2349 - urea carboxylase-associated protein 1, at 2,502,587 to 2,503,222 _2349 Position (kb) 2500 2501 2502Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2500.198 kb on + strand, within Psest_2346at 2500.227 kb on + strand, within Psest_2346at 2500.350 kb on + strand, within Psest_2346at 2500.426 kb on + strand, within Psest_2346at 2500.426 kb on + strand, within Psest_2346at 2500.427 kb on - strand, within Psest_2346at 2500.427 kb on - strand, within Psest_2346at 2500.837 kb on - strand, within Psest_2346at 2500.837 kb on - strand, within Psest_2346at 2500.837 kb on - strand, within Psest_2346at 2500.863 kb on + strand, within Psest_2346at 2500.863 kb on + strand, within Psest_2346at 2501.299 kb on - strand, within Psest_2347at 2501.457 kb on - strand, within Psest_2347at 2501.744 kb on + strand, within Psest_2347at 2501.744 kb on + strand, within Psest_2347at 2501.744 kb on + strand, within Psest_2347at 2501.745 kb on - strand, within Psest_2347at 2501.745 kb on - strand, within Psest_2347at 2501.745 kb on - strand, within Psest_2347at 2501.745 kb on - strand, within Psest_2347at 2501.745 kb on - strand, within Psest_2347at 2501.832 kb on - strandat 2502.162 kb on - strand, within Psest_2348at 2502.180 kb on + strand, within Psest_2348at 2502.372 kb on + strand, within Psest_2348at 2502.384 kb on + strand, within Psest_2348at 2502.450 kb on + strand, within Psest_2348at 2502.568 kb on - strandat 2502.568 kb on - strandat 2502.568 kb on - strandat 2502.803 kb on + strand, within Psest_2349at 2502.803 kb on + strand, within Psest_2349at 2502.828 kb on - strand, within Psest_2349

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.2 vol%
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2,500,198 + Psest_2346 0.14 +2.0
2,500,227 + Psest_2346 0.18 -0.7
2,500,350 + Psest_2346 0.31 -0.3
2,500,426 + Psest_2346 0.40 +0.5
2,500,426 + Psest_2346 0.40 +1.0
2,500,427 - Psest_2346 0.40 -2.1
2,500,427 - Psest_2346 0.40 +1.0
2,500,837 - Psest_2346 0.86 +1.4
2,500,837 - Psest_2346 0.86 -0.3
2,500,837 - Psest_2346 0.86 +2.9
2,500,863 + Psest_2346 0.89 +0.1
2,500,863 + Psest_2346 0.89 +0.7
2,501,299 - Psest_2347 0.38 +0.8
2,501,457 - Psest_2347 0.56 +1.1
2,501,744 + Psest_2347 0.89 +0.0
2,501,744 + Psest_2347 0.89 +0.6
2,501,744 + Psest_2347 0.89 -1.7
2,501,745 - Psest_2347 0.89 +0.3
2,501,745 - Psest_2347 0.89 +2.1
2,501,745 - Psest_2347 0.89 +1.2
2,501,745 - Psest_2347 0.89 +0.6
2,501,745 - Psest_2347 0.89 +0.7
2,501,832 - +1.1
2,502,162 - Psest_2348 0.43 -0.2
2,502,180 + Psest_2348 0.46 +0.3
2,502,372 + Psest_2348 0.72 -1.1
2,502,384 + Psest_2348 0.74 +0.8
2,502,450 + Psest_2348 0.83 -2.3
2,502,568 - +0.2
2,502,568 - +1.4
2,502,568 - +1.1
2,502,803 + Psest_2349 0.34 -0.4
2,502,803 + Psest_2349 0.34 -0.3
2,502,828 - Psest_2349 0.38 +0.9

Or see this region's nucleotide sequence