Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0168

Experiment: Furfuryl Alcohol 0.2 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0166 and Psest_0167 are separated by 213 nucleotidesPsest_0167 and Psest_0168 are separated by 1 nucleotidesPsest_0168 and Psest_0169 are separated by 197 nucleotidesPsest_0169 and Psest_0170 are separated by 28 nucleotides Psest_0166: Psest_0166 - NADPH:quinone reductase and related Zn-dependent oxidoreductases, at 163,588 to 164,568 _0166 Psest_0167: Psest_0167 - Flagellar basal body-associated protein, at 164,782 to 165,183 _0167 Psest_0168: Psest_0168 - Uncharacterized conserved protein, at 165,185 to 165,634 _0168 Psest_0169: Psest_0169 - hypothetical protein, at 165,832 to 165,984 _0169 Psest_0170: Psest_0170 - 5,10-methenyltetrahydrofolate synthetase, at 166,013 to 166,615 _0170 Position (kb) 165 166Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 164.198 kb on + strand, within Psest_0166at 164.198 kb on + strand, within Psest_0166at 164.198 kb on + strand, within Psest_0166at 164.198 kb on + strand, within Psest_0166at 164.198 kb on + strand, within Psest_0166at 164.198 kb on + strand, within Psest_0166at 164.199 kb on - strand, within Psest_0166at 164.199 kb on - strand, within Psest_0166at 164.417 kb on + strand, within Psest_0166at 164.417 kb on + strand, within Psest_0166at 164.417 kb on + strand, within Psest_0166at 164.417 kb on + strand, within Psest_0166at 164.417 kb on + strand, within Psest_0166at 164.418 kb on - strand, within Psest_0166at 164.418 kb on - strand, within Psest_0166at 164.418 kb on - strand, within Psest_0166at 164.418 kb on - strand, within Psest_0166at 164.418 kb on - strand, within Psest_0166at 164.626 kb on - strandat 164.644 kb on + strandat 164.644 kb on + strandat 164.645 kb on - strandat 164.645 kb on - strandat 164.695 kb on + strandat 164.696 kb on - strandat 164.696 kb on - strandat 164.696 kb on - strandat 164.696 kb on - strandat 164.697 kb on + strandat 164.697 kb on + strandat 164.697 kb on + strandat 164.697 kb on + strandat 164.698 kb on - strandat 164.788 kb on + strandat 164.875 kb on + strand, within Psest_0167at 164.876 kb on - strand, within Psest_0167at 164.878 kb on + strand, within Psest_0167at 164.908 kb on + strand, within Psest_0167at 164.908 kb on + strand, within Psest_0167at 164.908 kb on + strand, within Psest_0167at 164.908 kb on + strand, within Psest_0167at 164.908 kb on + strand, within Psest_0167at 164.908 kb on + strand, within Psest_0167at 164.908 kb on + strand, within Psest_0167at 164.908 kb on + strand, within Psest_0167at 164.908 kb on + strand, within Psest_0167at 164.908 kb on + strand, within Psest_0167at 164.908 kb on + strand, within Psest_0167at 164.908 kb on + strand, within Psest_0167at 164.909 kb on - strand, within Psest_0167at 164.909 kb on - strand, within Psest_0167at 164.909 kb on - strand, within Psest_0167at 164.909 kb on - strand, within Psest_0167at 164.909 kb on - strand, within Psest_0167at 164.909 kb on - strand, within Psest_0167at 164.909 kb on - strand, within Psest_0167at 164.932 kb on + strand, within Psest_0167at 164.932 kb on + strand, within Psest_0167at 164.932 kb on + strand, within Psest_0167at 164.932 kb on + strand, within Psest_0167at 164.932 kb on + strand, within Psest_0167at 164.933 kb on - strand, within Psest_0167at 164.933 kb on - strand, within Psest_0167at 164.933 kb on - strand, within Psest_0167at 164.935 kb on + strand, within Psest_0167at 164.935 kb on + strand, within Psest_0167at 164.935 kb on + strand, within Psest_0167at 164.935 kb on + strand, within Psest_0167at 164.935 kb on + strand, within Psest_0167at 164.935 kb on + strand, within Psest_0167at 164.935 kb on + strand, within Psest_0167at 164.936 kb on - strand, within Psest_0167at 164.936 kb on - strand, within Psest_0167at 164.936 kb on - strand, within Psest_0167at 164.936 kb on - strand, within Psest_0167at 164.936 kb on - strand, within Psest_0167at 164.936 kb on - strand, within Psest_0167at 164.936 kb on - strand, within Psest_0167at 164.936 kb on - strand, within Psest_0167at 164.936 kb on - strand, within Psest_0167at 164.936 kb on - strand, within Psest_0167at 165.135 kb on + strand, within Psest_0167at 165.136 kb on - strand, within Psest_0167at 165.486 kb on + strand, within Psest_0168at 165.486 kb on + strand, within Psest_0168at 165.487 kb on - strand, within Psest_0168at 165.487 kb on - strand, within Psest_0168at 165.487 kb on - strand, within Psest_0168at 165.487 kb on - strand, within Psest_0168at 165.487 kb on - strand, within Psest_0168at 165.514 kb on + strand, within Psest_0168at 165.514 kb on + strand, within Psest_0168at 165.514 kb on + strand, within Psest_0168at 165.515 kb on - strand, within Psest_0168at 165.515 kb on - strand, within Psest_0168at 165.541 kb on - strand, within Psest_0168at 165.549 kb on - strand, within Psest_0168at 165.627 kb on + strandat 165.703 kb on + strandat 165.703 kb on + strandat 165.703 kb on + strandat 165.704 kb on - strandat 165.704 kb on - strandat 165.704 kb on - strandat 165.750 kb on - strandat 165.750 kb on - strandat 165.769 kb on + strandat 165.769 kb on + strandat 165.777 kb on + strandat 165.777 kb on + strandat 165.840 kb on + strandat 165.840 kb on + strandat 165.840 kb on + strandat 165.840 kb on + strandat 165.841 kb on - strandat 165.849 kb on + strand, within Psest_0169at 165.903 kb on + strand, within Psest_0169at 166.023 kb on + strandat 166.023 kb on + strandat 166.058 kb on + strandat 166.058 kb on + strandat 166.058 kb on + strandat 166.059 kb on - strandat 166.059 kb on - strandat 166.059 kb on - strandat 166.059 kb on - strandat 166.059 kb on - strandat 166.173 kb on + strand, within Psest_0170at 166.174 kb on - strand, within Psest_0170at 166.174 kb on - strand, within Psest_0170at 166.174 kb on - strand, within Psest_0170at 166.174 kb on - strand, within Psest_0170at 166.174 kb on - strand, within Psest_0170at 166.174 kb on - strand, within Psest_0170at 166.174 kb on - strand, within Psest_0170at 166.174 kb on - strand, within Psest_0170at 166.383 kb on + strand, within Psest_0170at 166.383 kb on + strand, within Psest_0170at 166.383 kb on + strand, within Psest_0170at 166.383 kb on + strand, within Psest_0170at 166.383 kb on + strand, within Psest_0170at 166.384 kb on - strand, within Psest_0170at 166.384 kb on - strand, within Psest_0170at 166.384 kb on - strand, within Psest_0170at 166.456 kb on - strand, within Psest_0170at 166.456 kb on - strand, within Psest_0170at 166.456 kb on - strand, within Psest_0170

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.2 vol%
remove
164,198 + Psest_0166 0.62 +1.9
164,198 + Psest_0166 0.62 +1.0
164,198 + Psest_0166 0.62 +0.7
164,198 + Psest_0166 0.62 +0.6
164,198 + Psest_0166 0.62 -0.5
164,198 + Psest_0166 0.62 -0.4
164,199 - Psest_0166 0.62 +0.6
164,199 - Psest_0166 0.62 -0.8
164,417 + Psest_0166 0.85 -1.5
164,417 + Psest_0166 0.85 -0.5
164,417 + Psest_0166 0.85 +1.2
164,417 + Psest_0166 0.85 +0.0
164,417 + Psest_0166 0.85 +0.7
164,418 - Psest_0166 0.85 -1.0
164,418 - Psest_0166 0.85 +0.8
164,418 - Psest_0166 0.85 -1.6
164,418 - Psest_0166 0.85 -1.9
164,418 - Psest_0166 0.85 -1.2
164,626 - -0.6
164,644 + -1.4
164,644 + +1.1
164,645 - +0.5
164,645 - -0.5
164,695 + -0.0
164,696 - +1.6
164,696 - +0.8
164,696 - +0.3
164,696 - -0.9
164,697 + -1.4
164,697 + -0.5
164,697 + -0.2
164,697 + -0.7
164,698 - -0.6
164,788 + -1.7
164,875 + Psest_0167 0.23 -0.0
164,876 - Psest_0167 0.23 +0.7
164,878 + Psest_0167 0.24 +1.0
164,908 + Psest_0167 0.31 -0.8
164,908 + Psest_0167 0.31 +0.0
164,908 + Psest_0167 0.31 +0.3
164,908 + Psest_0167 0.31 +0.5
164,908 + Psest_0167 0.31 +0.6
164,908 + Psest_0167 0.31 +2.2
164,908 + Psest_0167 0.31 -0.3
164,908 + Psest_0167 0.31 -2.5
164,908 + Psest_0167 0.31 +1.4
164,908 + Psest_0167 0.31 +0.6
164,908 + Psest_0167 0.31 +2.1
164,908 + Psest_0167 0.31 -0.0
164,909 - Psest_0167 0.32 -0.8
164,909 - Psest_0167 0.32 +0.1
164,909 - Psest_0167 0.32 -1.0
164,909 - Psest_0167 0.32 -2.1
164,909 - Psest_0167 0.32 +1.6
164,909 - Psest_0167 0.32 -0.8
164,909 - Psest_0167 0.32 -1.2
164,932 + Psest_0167 0.37 -0.4
164,932 + Psest_0167 0.37 +1.1
164,932 + Psest_0167 0.37 +0.6
164,932 + Psest_0167 0.37 -1.5
164,932 + Psest_0167 0.37 -1.7
164,933 - Psest_0167 0.38 -1.2
164,933 - Psest_0167 0.38 -0.5
164,933 - Psest_0167 0.38 +0.1
164,935 + Psest_0167 0.38 -0.6
164,935 + Psest_0167 0.38 +1.5
164,935 + Psest_0167 0.38 -0.5
164,935 + Psest_0167 0.38 -0.6
164,935 + Psest_0167 0.38 +0.4
164,935 + Psest_0167 0.38 -0.2
164,935 + Psest_0167 0.38 +0.5
164,936 - Psest_0167 0.38 -0.9
164,936 - Psest_0167 0.38 -0.2
164,936 - Psest_0167 0.38 +1.0
164,936 - Psest_0167 0.38 -2.2
164,936 - Psest_0167 0.38 +0.4
164,936 - Psest_0167 0.38 +1.1
164,936 - Psest_0167 0.38 +0.5
164,936 - Psest_0167 0.38 +0.4
164,936 - Psest_0167 0.38 -1.1
164,936 - Psest_0167 0.38 +1.3
165,135 + Psest_0167 0.88 -0.8
165,136 - Psest_0167 0.88 +1.0
165,486 + Psest_0168 0.67 +0.2
165,486 + Psest_0168 0.67 +1.7
165,487 - Psest_0168 0.67 -3.2
165,487 - Psest_0168 0.67 +0.9
165,487 - Psest_0168 0.67 -0.3
165,487 - Psest_0168 0.67 +0.3
165,487 - Psest_0168 0.67 +0.8
165,514 + Psest_0168 0.73 -1.8
165,514 + Psest_0168 0.73 -1.8
165,514 + Psest_0168 0.73 +0.5
165,515 - Psest_0168 0.73 -0.3
165,515 - Psest_0168 0.73 -0.3
165,541 - Psest_0168 0.79 +2.2
165,549 - Psest_0168 0.81 +0.2
165,627 + -0.9
165,703 + +0.1
165,703 + +0.1
165,703 + +0.4
165,704 - -2.2
165,704 - +0.1
165,704 - -1.7
165,750 - -2.5
165,750 - -3.3
165,769 + +0.7
165,769 + -2.0
165,777 + +0.2
165,777 + +1.7
165,840 + +2.3
165,840 + -1.2
165,840 + -1.5
165,840 + +0.1
165,841 - -2.1
165,849 + Psest_0169 0.11 -1.7
165,903 + Psest_0169 0.46 -0.6
166,023 + -0.7
166,023 + +0.6
166,058 + -0.2
166,058 + +0.9
166,058 + -0.0
166,059 - +0.3
166,059 - -0.3
166,059 - +0.4
166,059 - -0.6
166,059 - +0.9
166,173 + Psest_0170 0.27 +0.6
166,174 - Psest_0170 0.27 +0.2
166,174 - Psest_0170 0.27 +0.6
166,174 - Psest_0170 0.27 +1.6
166,174 - Psest_0170 0.27 -0.0
166,174 - Psest_0170 0.27 -0.9
166,174 - Psest_0170 0.27 -2.1
166,174 - Psest_0170 0.27 +0.2
166,174 - Psest_0170 0.27 +0.6
166,383 + Psest_0170 0.61 -0.2
166,383 + Psest_0170 0.61 +0.5
166,383 + Psest_0170 0.61 -1.4
166,383 + Psest_0170 0.61 -0.7
166,383 + Psest_0170 0.61 -0.2
166,384 - Psest_0170 0.62 +1.5
166,384 - Psest_0170 0.62 -0.1
166,384 - Psest_0170 0.62 -0.0
166,456 - Psest_0170 0.73 +0.2
166,456 - Psest_0170 0.73 +1.4
166,456 - Psest_0170 0.73 -2.0

Or see this region's nucleotide sequence