Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0136

Experiment: Furfuryl Alcohol 0.2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0135 and Psest_0136 are separated by 109 nucleotidesPsest_0136 and Psest_0137 overlap by 4 nucleotidesPsest_0137 and Psest_0138 are separated by 64 nucleotides Psest_0135: Psest_0135 - Uncharacterized enzymes related to aldose 1-epimerase, at 134,749 to 135,651 _0135 Psest_0136: Psest_0136 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 135,761 to 136,450 _0136 Psest_0137: Psest_0137 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 136,447 to 137,142 _0137 Psest_0138: Psest_0138 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 137,207 to 137,962 _0138 Position (kb) 135 136 137Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 134.877 kb on - strand, within Psest_0135at 134.920 kb on + strand, within Psest_0135at 134.920 kb on + strand, within Psest_0135at 135.008 kb on + strand, within Psest_0135at 135.008 kb on + strand, within Psest_0135at 135.008 kb on + strand, within Psest_0135at 135.008 kb on + strand, within Psest_0135at 135.008 kb on + strand, within Psest_0135at 135.008 kb on + strand, within Psest_0135at 135.008 kb on + strand, within Psest_0135at 135.008 kb on + strand, within Psest_0135at 135.008 kb on + strand, within Psest_0135at 135.008 kb on + strand, within Psest_0135at 135.009 kb on - strand, within Psest_0135at 135.009 kb on - strand, within Psest_0135at 135.009 kb on - strand, within Psest_0135at 135.009 kb on - strand, within Psest_0135at 135.009 kb on - strand, within Psest_0135at 135.009 kb on - strand, within Psest_0135at 135.009 kb on - strand, within Psest_0135at 135.009 kb on - strand, within Psest_0135at 135.081 kb on + strand, within Psest_0135at 135.089 kb on + strand, within Psest_0135at 135.090 kb on - strand, within Psest_0135at 135.090 kb on - strand, within Psest_0135at 135.090 kb on - strand, within Psest_0135at 135.146 kb on + strand, within Psest_0135at 135.146 kb on + strand, within Psest_0135at 135.146 kb on + strand, within Psest_0135at 135.146 kb on + strand, within Psest_0135at 135.146 kb on + strand, within Psest_0135at 135.146 kb on + strand, within Psest_0135at 135.146 kb on + strand, within Psest_0135at 135.146 kb on + strand, within Psest_0135at 135.146 kb on + strand, within Psest_0135at 135.147 kb on - strand, within Psest_0135at 135.147 kb on - strand, within Psest_0135at 135.147 kb on - strand, within Psest_0135at 135.147 kb on - strand, within Psest_0135at 135.147 kb on - strand, within Psest_0135at 135.168 kb on + strand, within Psest_0135at 135.169 kb on - strand, within Psest_0135at 135.361 kb on + strand, within Psest_0135at 135.362 kb on - strand, within Psest_0135at 135.398 kb on + strand, within Psest_0135at 135.399 kb on - strand, within Psest_0135at 135.399 kb on - strand, within Psest_0135at 135.543 kb on - strand, within Psest_0135at 135.598 kb on + strandat 135.599 kb on - strandat 135.664 kb on - strandat 135.843 kb on + strand, within Psest_0136at 135.843 kb on + strand, within Psest_0136at 135.843 kb on + strand, within Psest_0136at 135.843 kb on + strand, within Psest_0136at 135.844 kb on - strand, within Psest_0136at 135.844 kb on - strand, within Psest_0136at 135.844 kb on - strand, within Psest_0136at 135.844 kb on - strand, within Psest_0136at 135.882 kb on + strand, within Psest_0136at 135.882 kb on + strand, within Psest_0136at 135.882 kb on + strand, within Psest_0136at 135.882 kb on + strand, within Psest_0136at 135.882 kb on + strand, within Psest_0136at 135.883 kb on - strand, within Psest_0136at 135.984 kb on + strand, within Psest_0136at 135.985 kb on - strand, within Psest_0136at 136.124 kb on - strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.126 kb on - strand, within Psest_0136at 136.126 kb on - strand, within Psest_0136at 136.126 kb on - strand, within Psest_0136at 136.126 kb on - strand, within Psest_0136at 136.126 kb on - strand, within Psest_0136at 136.126 kb on - strand, within Psest_0136at 136.126 kb on - strand, within Psest_0136at 136.126 kb on - strand, within Psest_0136at 136.126 kb on - strand, within Psest_0136at 136.182 kb on + strand, within Psest_0136at 136.230 kb on + strand, within Psest_0136at 136.230 kb on + strand, within Psest_0136at 136.233 kb on + strand, within Psest_0136at 136.233 kb on + strand, within Psest_0136at 136.233 kb on + strand, within Psest_0136at 136.233 kb on + strand, within Psest_0136at 136.234 kb on - strand, within Psest_0136at 136.234 kb on - strand, within Psest_0136at 136.234 kb on - strand, within Psest_0136at 136.234 kb on - strand, within Psest_0136at 136.234 kb on - strand, within Psest_0136at 136.284 kb on + strand, within Psest_0136at 136.285 kb on - strand, within Psest_0136at 136.285 kb on - strand, within Psest_0136at 136.285 kb on - strand, within Psest_0136at 136.417 kb on + strandat 136.417 kb on + strandat 136.418 kb on - strandat 136.418 kb on - strandat 136.418 kb on - strandat 136.418 kb on - strandat 136.418 kb on - strandat 136.418 kb on - strandat 136.500 kb on + strandat 136.532 kb on + strand, within Psest_0137at 136.532 kb on + strand, within Psest_0137at 136.532 kb on + strand, within Psest_0137at 136.532 kb on + strand, within Psest_0137at 136.532 kb on + strand, within Psest_0137at 136.533 kb on - strand, within Psest_0137at 136.533 kb on - strand, within Psest_0137at 136.533 kb on - strand, within Psest_0137at 136.533 kb on - strand, within Psest_0137at 136.630 kb on + strand, within Psest_0137at 136.630 kb on + strand, within Psest_0137at 136.630 kb on + strand, within Psest_0137at 136.631 kb on - strand, within Psest_0137at 136.631 kb on - strand, within Psest_0137at 136.631 kb on - strand, within Psest_0137at 136.631 kb on - strand, within Psest_0137at 136.928 kb on + strand, within Psest_0137at 136.928 kb on + strand, within Psest_0137at 136.928 kb on + strand, within Psest_0137at 136.928 kb on + strand, within Psest_0137at 136.929 kb on - strand, within Psest_0137at 136.979 kb on + strand, within Psest_0137at 136.979 kb on + strand, within Psest_0137at 136.979 kb on + strand, within Psest_0137at 136.979 kb on + strand, within Psest_0137at 136.979 kb on + strand, within Psest_0137at 136.979 kb on + strand, within Psest_0137at 136.979 kb on + strand, within Psest_0137at 136.979 kb on + strand, within Psest_0137at 136.980 kb on - strand, within Psest_0137at 136.980 kb on - strand, within Psest_0137at 136.983 kb on + strand, within Psest_0137at 137.009 kb on + strand, within Psest_0137at 137.010 kb on - strand, within Psest_0137at 137.142 kb on + strandat 137.142 kb on + strandat 137.143 kb on - strandat 137.143 kb on - strandat 137.143 kb on - strandat 137.211 kb on + strandat 137.211 kb on + strandat 137.212 kb on - strandat 137.212 kb on - strandat 137.229 kb on + strandat 137.229 kb on + strandat 137.229 kb on + strandat 137.229 kb on + strandat 137.229 kb on + strandat 137.229 kb on + strandat 137.229 kb on + strandat 137.230 kb on - strandat 137.230 kb on - strandat 137.230 kb on - strandat 137.230 kb on - strandat 137.230 kb on - strandat 137.230 kb on - strandat 137.230 kb on - strandat 137.230 kb on - strandat 137.230 kb on - strandat 137.230 kb on - strandat 137.230 kb on - strandat 137.250 kb on + strandat 137.250 kb on + strandat 137.250 kb on + strandat 137.250 kb on + strandat 137.250 kb on + strandat 137.250 kb on + strandat 137.250 kb on + strandat 137.251 kb on - strandat 137.251 kb on - strandat 137.251 kb on - strandat 137.251 kb on - strandat 137.251 kb on - strandat 137.251 kb on - strandat 137.251 kb on - strandat 137.251 kb on - strandat 137.251 kb on - strandat 137.251 kb on - strandat 137.251 kb on - strandat 137.251 kb on - strandat 137.251 kb on - strandat 137.251 kb on - strandat 137.251 kb on - strandat 137.251 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.2 vol%
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134,877 - Psest_0135 0.14 +0.3
134,920 + Psest_0135 0.19 +0.3
134,920 + Psest_0135 0.19 -0.5
135,008 + Psest_0135 0.29 -0.2
135,008 + Psest_0135 0.29 +0.0
135,008 + Psest_0135 0.29 -0.7
135,008 + Psest_0135 0.29 +0.1
135,008 + Psest_0135 0.29 -1.5
135,008 + Psest_0135 0.29 +0.6
135,008 + Psest_0135 0.29 -0.9
135,008 + Psest_0135 0.29 -0.7
135,008 + Psest_0135 0.29 +1.7
135,008 + Psest_0135 0.29 -0.5
135,009 - Psest_0135 0.29 -0.3
135,009 - Psest_0135 0.29 +0.5
135,009 - Psest_0135 0.29 +1.5
135,009 - Psest_0135 0.29 +0.0
135,009 - Psest_0135 0.29 -0.7
135,009 - Psest_0135 0.29 -2.6
135,009 - Psest_0135 0.29 +1.2
135,009 - Psest_0135 0.29 +0.1
135,081 + Psest_0135 0.37 +0.6
135,089 + Psest_0135 0.38 -2.0
135,090 - Psest_0135 0.38 +0.2
135,090 - Psest_0135 0.38 +0.0
135,090 - Psest_0135 0.38 -0.6
135,146 + Psest_0135 0.44 -0.0
135,146 + Psest_0135 0.44 +0.6
135,146 + Psest_0135 0.44 -0.4
135,146 + Psest_0135 0.44 -0.2
135,146 + Psest_0135 0.44 +1.1
135,146 + Psest_0135 0.44 +0.0
135,146 + Psest_0135 0.44 +1.5
135,146 + Psest_0135 0.44 -0.9
135,146 + Psest_0135 0.44 +0.5
135,147 - Psest_0135 0.44 +0.5
135,147 - Psest_0135 0.44 -0.5
135,147 - Psest_0135 0.44 -0.7
135,147 - Psest_0135 0.44 +0.6
135,147 - Psest_0135 0.44 +1.4
135,168 + Psest_0135 0.46 +0.1
135,169 - Psest_0135 0.47 -1.0
135,361 + Psest_0135 0.68 -0.8
135,362 - Psest_0135 0.68 +2.4
135,398 + Psest_0135 0.72 +1.1
135,399 - Psest_0135 0.72 -0.7
135,399 - Psest_0135 0.72 +0.7
135,543 - Psest_0135 0.88 +0.2
135,598 + -0.7
135,599 - -0.4
135,664 - -1.6
135,843 + Psest_0136 0.12 -1.8
135,843 + Psest_0136 0.12 +1.0
135,843 + Psest_0136 0.12 -1.3
135,843 + Psest_0136 0.12 +0.2
135,844 - Psest_0136 0.12 +0.9
135,844 - Psest_0136 0.12 -0.5
135,844 - Psest_0136 0.12 +1.4
135,844 - Psest_0136 0.12 +2.0
135,882 + Psest_0136 0.18 -2.0
135,882 + Psest_0136 0.18 +0.4
135,882 + Psest_0136 0.18 -1.2
135,882 + Psest_0136 0.18 +0.7
135,882 + Psest_0136 0.18 -0.3
135,883 - Psest_0136 0.18 -1.7
135,984 + Psest_0136 0.32 +0.7
135,985 - Psest_0136 0.32 -1.8
136,124 - Psest_0136 0.53 -1.4
136,125 + Psest_0136 0.53 +0.2
136,125 + Psest_0136 0.53 -0.7
136,125 + Psest_0136 0.53 +1.2
136,125 + Psest_0136 0.53 +0.5
136,125 + Psest_0136 0.53 +0.3
136,125 + Psest_0136 0.53 +0.6
136,125 + Psest_0136 0.53 -0.4
136,125 + Psest_0136 0.53 -3.0
136,125 + Psest_0136 0.53 +0.2
136,125 + Psest_0136 0.53 +0.4
136,125 + Psest_0136 0.53 -0.8
136,125 + Psest_0136 0.53 -0.9
136,125 + Psest_0136 0.53 -1.0
136,125 + Psest_0136 0.53 -0.5
136,125 + Psest_0136 0.53 +0.5
136,126 - Psest_0136 0.53 +1.6
136,126 - Psest_0136 0.53 +1.0
136,126 - Psest_0136 0.53 +1.8
136,126 - Psest_0136 0.53 -0.9
136,126 - Psest_0136 0.53 -1.6
136,126 - Psest_0136 0.53 +0.5
136,126 - Psest_0136 0.53 -0.4
136,126 - Psest_0136 0.53 -1.4
136,126 - Psest_0136 0.53 -0.4
136,182 + Psest_0136 0.61 +0.6
136,230 + Psest_0136 0.68 +0.7
136,230 + Psest_0136 0.68 -0.4
136,233 + Psest_0136 0.68 +2.0
136,233 + Psest_0136 0.68 +0.9
136,233 + Psest_0136 0.68 +2.1
136,233 + Psest_0136 0.68 +0.4
136,234 - Psest_0136 0.69 +1.6
136,234 - Psest_0136 0.69 -1.7
136,234 - Psest_0136 0.69 +0.0
136,234 - Psest_0136 0.69 -0.0
136,234 - Psest_0136 0.69 -0.4
136,284 + Psest_0136 0.76 +1.8
136,285 - Psest_0136 0.76 -0.5
136,285 - Psest_0136 0.76 -0.6
136,285 - Psest_0136 0.76 -0.4
136,417 + -0.7
136,417 + -0.6
136,418 - +0.0
136,418 - -0.7
136,418 - +0.2
136,418 - +0.1
136,418 - -0.1
136,418 - -0.1
136,500 + -0.1
136,532 + Psest_0137 0.12 -1.4
136,532 + Psest_0137 0.12 -1.1
136,532 + Psest_0137 0.12 +0.8
136,532 + Psest_0137 0.12 +0.7
136,532 + Psest_0137 0.12 -0.4
136,533 - Psest_0137 0.12 +0.8
136,533 - Psest_0137 0.12 -1.4
136,533 - Psest_0137 0.12 +0.9
136,533 - Psest_0137 0.12 +0.7
136,630 + Psest_0137 0.26 -0.0
136,630 + Psest_0137 0.26 +0.5
136,630 + Psest_0137 0.26 -0.3
136,631 - Psest_0137 0.26 -0.4
136,631 - Psest_0137 0.26 +0.2
136,631 - Psest_0137 0.26 -0.9
136,631 - Psest_0137 0.26 +0.3
136,928 + Psest_0137 0.69 +1.3
136,928 + Psest_0137 0.69 +0.7
136,928 + Psest_0137 0.69 -1.6
136,928 + Psest_0137 0.69 -3.3
136,929 - Psest_0137 0.69 +0.9
136,979 + Psest_0137 0.76 +0.8
136,979 + Psest_0137 0.76 +0.5
136,979 + Psest_0137 0.76 +1.5
136,979 + Psest_0137 0.76 +1.0
136,979 + Psest_0137 0.76 -1.8
136,979 + Psest_0137 0.76 -0.1
136,979 + Psest_0137 0.76 -1.2
136,979 + Psest_0137 0.76 -1.7
136,980 - Psest_0137 0.77 -0.5
136,980 - Psest_0137 0.77 -0.5
136,983 + Psest_0137 0.77 -0.8
137,009 + Psest_0137 0.81 +0.8
137,010 - Psest_0137 0.81 -1.3
137,142 + -1.3
137,142 + +1.2
137,143 - +0.3
137,143 - +1.3
137,143 - -1.7
137,211 + -0.6
137,211 + +0.1
137,212 - +0.8
137,212 - -1.9
137,229 + +1.4
137,229 + +0.6
137,229 + +0.6
137,229 + -0.9
137,229 + -1.9
137,229 + +0.3
137,229 + +0.0
137,230 - -0.6
137,230 - +0.4
137,230 - -1.0
137,230 - +0.6
137,230 - +0.6
137,230 - -0.8
137,230 - -0.2
137,230 - +0.3
137,230 - +0.3
137,230 - -0.3
137,230 - +0.1
137,250 + -0.2
137,250 + +0.7
137,250 + -1.5
137,250 + +0.3
137,250 + -2.3
137,250 + -1.1
137,250 + -1.0
137,251 - +1.6
137,251 - +1.6
137,251 - -1.7
137,251 - -1.2
137,251 - -0.5
137,251 - -1.1
137,251 - +0.7
137,251 - +0.7
137,251 - -0.5
137,251 - +2.1
137,251 - +0.6
137,251 - -1.0
137,251 - +0.2
137,251 - -0.4
137,251 - -1.2
137,251 - +1.6

Or see this region's nucleotide sequence