Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0856 and Psest_0857 are separated by 275 nucleotides Psest_0857 and Psest_0858 are separated by 251 nucleotides
Psest_0856: Psest_0856 - Predicted oxidoreductase, at 927,168 to 928,031
_0856
Psest_0857: Psest_0857 - Membrane transporters of cations and cationic drugs, at 928,307 to 928,627
_0857
Psest_0858: Psest_0858 - Maltose operon periplasmic protein precursor (MalM)., at 928,879 to 929,802
_0858
Position (kb) 928
929 Strain fitness (log2 ratio) -2
-1
0
1
2 at 927.315 kb on + strand, within Psest_0856 at 927.315 kb on + strand, within Psest_0856 at 927.315 kb on + strand, within Psest_0856 at 927.315 kb on + strand, within Psest_0856 at 927.316 kb on - strand, within Psest_0856 at 927.316 kb on - strand, within Psest_0856 at 927.316 kb on - strand, within Psest_0856 at 927.316 kb on - strand, within Psest_0856 at 927.316 kb on - strand, within Psest_0856 at 927.316 kb on - strand, within Psest_0856 at 927.453 kb on + strand, within Psest_0856 at 927.454 kb on - strand, within Psest_0856 at 927.725 kb on - strand, within Psest_0856 at 927.725 kb on - strand, within Psest_0856 at 927.993 kb on + strand at 927.993 kb on + strand at 927.993 kb on + strand at 927.993 kb on + strand at 928.101 kb on + strand at 928.102 kb on - strand at 928.102 kb on - strand at 928.102 kb on - strand at 928.104 kb on + strand at 928.105 kb on - strand at 928.105 kb on - strand at 928.105 kb on - strand at 928.168 kb on + strand at 928.227 kb on - strand at 928.488 kb on - strand, within Psest_0857 at 928.488 kb on - strand, within Psest_0857 at 928.668 kb on + strand at 928.668 kb on + strand at 928.669 kb on - strand at 928.669 kb on - strand at 928.718 kb on + strand at 928.747 kb on + strand at 928.747 kb on + strand at 928.747 kb on + strand at 928.747 kb on + strand at 928.747 kb on + strand at 928.747 kb on + strand at 928.748 kb on - strand at 928.748 kb on - strand at 928.748 kb on - strand at 928.748 kb on - strand at 928.748 kb on - strand at 928.748 kb on - strand at 928.748 kb on - strand at 928.748 kb on - strand at 928.748 kb on - strand at 928.748 kb on - strand at 928.748 kb on - strand at 928.748 kb on - strand at 928.750 kb on - strand at 928.750 kb on - strand at 928.804 kb on + strand at 928.826 kb on + strand at 929.012 kb on + strand, within Psest_0858 at 929.012 kb on + strand, within Psest_0858 at 929.012 kb on + strand, within Psest_0858 at 929.013 kb on - strand, within Psest_0858 at 929.096 kb on - strand, within Psest_0858 at 929.099 kb on + strand, within Psest_0858 at 929.099 kb on + strand, within Psest_0858 at 929.099 kb on + strand, within Psest_0858 at 929.100 kb on - strand, within Psest_0858 at 929.158 kb on + strand, within Psest_0858 at 929.222 kb on + strand, within Psest_0858 at 929.279 kb on + strand, within Psest_0858 at 929.280 kb on - strand, within Psest_0858 at 929.381 kb on + strand, within Psest_0858 at 929.381 kb on + strand, within Psest_0858 at 929.381 kb on + strand, within Psest_0858 at 929.382 kb on - strand, within Psest_0858 at 929.382 kb on - strand, within Psest_0858 at 929.382 kb on - strand, within Psest_0858 at 929.382 kb on - strand at 929.382 kb on - strand, within Psest_0858 at 929.382 kb on - strand, within Psest_0858 at 929.382 kb on - strand, within Psest_0858 at 929.382 kb on - strand, within Psest_0858 at 929.382 kb on - strand, within Psest_0858 at 929.382 kb on - strand, within Psest_0858 at 929.477 kb on + strand, within Psest_0858 at 929.478 kb on - strand, within Psest_0858 at 929.478 kb on - strand, within Psest_0858 at 929.556 kb on - strand, within Psest_0858
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 927,315 + Psest_0856 0.17 -1.6 927,315 + Psest_0856 0.17 +1.7 927,315 + Psest_0856 0.17 +1.4 927,315 + Psest_0856 0.17 -1.3 927,316 - Psest_0856 0.17 +0.1 927,316 - Psest_0856 0.17 -1.5 927,316 - Psest_0856 0.17 -2.6 927,316 - Psest_0856 0.17 +0.6 927,316 - Psest_0856 0.17 -1.0 927,316 - Psest_0856 0.17 -1.4 927,453 + Psest_0856 0.33 -1.0 927,454 - Psest_0856 0.33 -1.4 927,725 - Psest_0856 0.64 +1.0 927,725 - Psest_0856 0.64 +0.4 927,993 + +2.3 927,993 + -0.8 927,993 + -0.9 927,993 + +0.9 928,101 + -2.5 928,102 - -0.6 928,102 - -0.5 928,102 - +0.1 928,104 + -0.6 928,105 - -0.6 928,105 - +1.4 928,105 - +1.2 928,168 + -0.3 928,227 - -0.2 928,488 - Psest_0857 0.56 -0.9 928,488 - Psest_0857 0.56 -2.6 928,668 + +0.5 928,668 + -2.6 928,669 - -0.6 928,669 - -1.4 928,718 + +1.0 928,747 + -1.9 928,747 + +0.1 928,747 + +0.6 928,747 + -2.1 928,747 + -0.7 928,747 + -0.0 928,748 - -0.1 928,748 - +1.4 928,748 - +1.0 928,748 - -2.3 928,748 - +1.9 928,748 - +1.0 928,748 - -2.1 928,748 - +0.4 928,748 - +0.1 928,748 - -0.4 928,748 - +1.3 928,748 - +2.5 928,750 - -0.2 928,750 - -0.1 928,804 + +2.3 928,826 + -2.6 929,012 + Psest_0858 0.14 -1.1 929,012 + Psest_0858 0.14 -0.7 929,012 + Psest_0858 0.14 +0.5 929,013 - Psest_0858 0.15 -1.5 929,096 - Psest_0858 0.23 -0.2 929,099 + Psest_0858 0.24 -1.3 929,099 + Psest_0858 0.24 +0.3 929,099 + Psest_0858 0.24 -0.6 929,100 - Psest_0858 0.24 -0.7 929,158 + Psest_0858 0.30 +0.3 929,222 + Psest_0858 0.37 +2.0 929,279 + Psest_0858 0.43 +1.0 929,280 - Psest_0858 0.43 -0.5 929,381 + Psest_0858 0.54 -0.4 929,381 + Psest_0858 0.54 -0.3 929,381 + Psest_0858 0.54 -1.0 929,382 - Psest_0858 0.54 -1.0 929,382 - Psest_0858 0.54 -1.9 929,382 - Psest_0858 0.54 -0.9 929,382 - +0.2 929,382 - Psest_0858 0.54 -2.0 929,382 - Psest_0858 0.54 +0.3 929,382 - Psest_0858 0.54 +0.3 929,382 - Psest_0858 0.54 -0.8 929,382 - Psest_0858 0.54 +0.3 929,382 - Psest_0858 0.54 -1.3 929,477 + Psest_0858 0.65 -1.0 929,478 - Psest_0858 0.65 -1.8 929,478 - Psest_0858 0.65 +0.2 929,556 - Psest_0858 0.73 +0.7
Or see this region's nucleotide sequence