Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0781 and Psest_0782 are separated by 250 nucleotides Psest_0782 and Psest_0783 are separated by 107 nucleotides
Psest_0781: Psest_0781 - phenylalanine-4-hydroxylase, monomeric form, at 849,615 to 850,400
_0781
Psest_0782: Psest_0782 - Transcriptional regulator of aromatic amino acids metabolism, at 850,651 to 852,210
_0782
Psest_0783: Psest_0783 - PAS domain S-box, at 852,318 to 856,490
_0783
Position (kb) 850
851
852
853 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 849.736 kb on + strand, within Psest_0781 at 849.736 kb on + strand, within Psest_0781 at 849.736 kb on + strand, within Psest_0781 at 849.736 kb on + strand, within Psest_0781 at 849.736 kb on + strand, within Psest_0781 at 849.737 kb on - strand, within Psest_0781 at 849.737 kb on - strand, within Psest_0781 at 849.737 kb on - strand, within Psest_0781 at 849.737 kb on - strand, within Psest_0781 at 849.764 kb on - strand, within Psest_0781 at 849.826 kb on + strand, within Psest_0781 at 849.826 kb on + strand, within Psest_0781 at 849.826 kb on + strand, within Psest_0781 at 849.826 kb on + strand, within Psest_0781 at 849.827 kb on - strand, within Psest_0781 at 849.827 kb on - strand, within Psest_0781 at 849.865 kb on + strand, within Psest_0781 at 849.865 kb on + strand, within Psest_0781 at 849.934 kb on + strand, within Psest_0781 at 849.934 kb on + strand, within Psest_0781 at 849.935 kb on - strand, within Psest_0781 at 849.935 kb on - strand, within Psest_0781 at 849.935 kb on - strand, within Psest_0781 at 849.977 kb on - strand, within Psest_0781 at 850.063 kb on + strand, within Psest_0781 at 850.063 kb on + strand, within Psest_0781 at 850.063 kb on + strand, within Psest_0781 at 850.089 kb on - strand, within Psest_0781 at 850.264 kb on + strand, within Psest_0781 at 850.264 kb on + strand, within Psest_0781 at 850.265 kb on - strand, within Psest_0781 at 850.380 kb on + strand at 850.380 kb on + strand at 850.404 kb on + strand at 850.457 kb on + strand at 850.457 kb on + strand at 850.458 kb on - strand at 850.458 kb on - strand at 850.458 kb on - strand at 850.568 kb on + strand at 850.580 kb on - strand at 850.656 kb on + strand at 850.656 kb on + strand at 850.720 kb on + strand at 850.774 kb on + strand at 850.774 kb on + strand at 850.774 kb on + strand at 850.774 kb on + strand at 850.775 kb on - strand at 850.775 kb on - strand at 850.775 kb on - strand at 850.947 kb on + strand, within Psest_0782 at 851.190 kb on - strand, within Psest_0782 at 851.231 kb on - strand, within Psest_0782 at 851.231 kb on - strand, within Psest_0782 at 851.665 kb on + strand, within Psest_0782 at 851.665 kb on + strand, within Psest_0782 at 851.665 kb on + strand, within Psest_0782 at 851.666 kb on - strand, within Psest_0782 at 851.666 kb on - strand, within Psest_0782 at 851.666 kb on - strand, within Psest_0782 at 851.746 kb on + strand, within Psest_0782 at 851.776 kb on - strand, within Psest_0782 at 852.793 kb on + strand, within Psest_0783 at 852.793 kb on + strand, within Psest_0783 at 853.091 kb on - strand, within Psest_0783 at 853.091 kb on - strand, within Psest_0783 at 853.091 kb on - strand, within Psest_0783
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 849,736 + Psest_0781 0.15 +0.2 849,736 + Psest_0781 0.15 -1.6 849,736 + Psest_0781 0.15 -0.1 849,736 + Psest_0781 0.15 +1.4 849,736 + Psest_0781 0.15 -0.7 849,737 - Psest_0781 0.16 +1.0 849,737 - Psest_0781 0.16 +0.0 849,737 - Psest_0781 0.16 -1.2 849,737 - Psest_0781 0.16 -0.5 849,764 - Psest_0781 0.19 -0.1 849,826 + Psest_0781 0.27 -0.1 849,826 + Psest_0781 0.27 -0.1 849,826 + Psest_0781 0.27 +0.5 849,826 + Psest_0781 0.27 -2.8 849,827 - Psest_0781 0.27 +0.1 849,827 - Psest_0781 0.27 +0.6 849,865 + Psest_0781 0.32 -2.2 849,865 + Psest_0781 0.32 -0.0 849,934 + Psest_0781 0.41 +1.8 849,934 + Psest_0781 0.41 +0.5 849,935 - Psest_0781 0.41 -0.7 849,935 - Psest_0781 0.41 -1.6 849,935 - Psest_0781 0.41 -0.5 849,977 - Psest_0781 0.46 -0.4 850,063 + Psest_0781 0.57 +1.2 850,063 + Psest_0781 0.57 +1.8 850,063 + Psest_0781 0.57 -0.2 850,089 - Psest_0781 0.60 -0.9 850,264 + Psest_0781 0.83 -0.7 850,264 + Psest_0781 0.83 -1.4 850,265 - Psest_0781 0.83 -0.1 850,380 + +1.4 850,380 + +0.1 850,404 + +0.5 850,457 + -1.1 850,457 + +0.5 850,458 - -2.2 850,458 - -0.9 850,458 - -0.4 850,568 + +0.8 850,580 - -0.8 850,656 + -0.2 850,656 + -0.2 850,720 + +0.4 850,774 + -1.6 850,774 + -1.1 850,774 + -1.5 850,774 + +2.0 850,775 - +0.4 850,775 - +1.8 850,775 - +0.3 850,947 + Psest_0782 0.19 -1.9 851,190 - Psest_0782 0.35 -1.1 851,231 - Psest_0782 0.37 -0.8 851,231 - Psest_0782 0.37 -1.3 851,665 + Psest_0782 0.65 -1.8 851,665 + Psest_0782 0.65 +0.1 851,665 + Psest_0782 0.65 -2.0 851,666 - Psest_0782 0.65 -0.7 851,666 - Psest_0782 0.65 -1.3 851,666 - Psest_0782 0.65 +1.0 851,746 + Psest_0782 0.70 -0.8 851,776 - Psest_0782 0.72 +1.3 852,793 + Psest_0783 0.11 +1.0 852,793 + Psest_0783 0.11 -1.4 853,091 - Psest_0783 0.19 -2.2 853,091 - Psest_0783 0.19 +0.2 853,091 - Psest_0783 0.19 +0.2
Or see this region's nucleotide sequence