Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0652

Experiment: Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0651 and Psest_0652 overlap by 7 nucleotidesPsest_0652 and Psest_0653 are separated by 153 nucleotides Psest_0651: Psest_0651 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 706,630 to 709,023 _0651 Psest_0652: Psest_0652 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 709,017 to 709,952 _0652 Psest_0653: Psest_0653 - Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain, at 710,106 to 711,161 _0653 Position (kb) 709 710Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 708.142 kb on - strand, within Psest_0651at 708.447 kb on - strand, within Psest_0651at 708.503 kb on + strand, within Psest_0651at 708.503 kb on + strand, within Psest_0651at 708.504 kb on - strand, within Psest_0651at 708.504 kb on - strand, within Psest_0651at 708.552 kb on - strand, within Psest_0651at 708.552 kb on - strand, within Psest_0651at 708.552 kb on - strand, within Psest_0651at 708.611 kb on + strand, within Psest_0651at 708.611 kb on + strand, within Psest_0651at 708.612 kb on - strand, within Psest_0651at 709.003 kb on + strandat 709.093 kb on + strandat 709.093 kb on + strandat 709.093 kb on + strandat 709.093 kb on + strandat 709.093 kb on + strandat 709.093 kb on + strandat 709.093 kb on + strandat 709.094 kb on - strandat 709.094 kb on - strandat 709.094 kb on - strandat 709.094 kb on - strandat 709.094 kb on - strandat 709.094 kb on - strandat 709.094 kb on - strandat 709.094 kb on - strandat 709.265 kb on + strand, within Psest_0652at 709.265 kb on + strand, within Psest_0652at 709.661 kb on + strand, within Psest_0652at 709.662 kb on - strand, within Psest_0652at 709.768 kb on - strand, within Psest_0652at 709.840 kb on + strand, within Psest_0652at 709.852 kb on + strand, within Psest_0652at 709.952 kb on + strandat 709.952 kb on + strandat 709.952 kb on + strandat 709.953 kb on - strandat 710.031 kb on - strandat 710.031 kb on - strandat 710.422 kb on + strand, within Psest_0653

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml
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708,142 - Psest_0651 0.63 +1.6
708,447 - Psest_0651 0.76 +0.6
708,503 + Psest_0651 0.78 -2.1
708,503 + Psest_0651 0.78 +0.8
708,504 - Psest_0651 0.78 -0.9
708,504 - Psest_0651 0.78 -1.0
708,552 - Psest_0651 0.80 +0.7
708,552 - Psest_0651 0.80 +1.8
708,552 - Psest_0651 0.80 -1.4
708,611 + Psest_0651 0.83 -2.4
708,611 + Psest_0651 0.83 +0.8
708,612 - Psest_0651 0.83 -2.5
709,003 + +0.7
709,093 + +0.6
709,093 + +0.5
709,093 + -1.1
709,093 + -1.3
709,093 + -1.3
709,093 + +1.2
709,093 + -1.5
709,094 - +0.6
709,094 - -0.2
709,094 - +0.9
709,094 - +0.7
709,094 - +1.8
709,094 - -0.3
709,094 - -0.6
709,094 - -0.7
709,265 + Psest_0652 0.26 -1.0
709,265 + Psest_0652 0.26 -0.6
709,661 + Psest_0652 0.69 +1.1
709,662 - Psest_0652 0.69 +1.3
709,768 - Psest_0652 0.80 -1.3
709,840 + Psest_0652 0.88 +2.6
709,852 + Psest_0652 0.89 +2.0
709,952 + +2.5
709,952 + -1.0
709,952 + -3.1
709,953 - -0.9
710,031 - +2.2
710,031 - -1.1
710,422 + Psest_0653 0.30 +0.6

Or see this region's nucleotide sequence