Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0651 and Psest_0652 overlap by 7 nucleotides Psest_0652 and Psest_0653 are separated by 153 nucleotides
Psest_0651: Psest_0651 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 706,630 to 709,023
_0651
Psest_0652: Psest_0652 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 709,017 to 709,952
_0652
Psest_0653: Psest_0653 - Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain, at 710,106 to 711,161
_0653
Position (kb)
709
710 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 708.142 kb on - strand, within Psest_0651 at 708.447 kb on - strand, within Psest_0651 at 708.503 kb on + strand, within Psest_0651 at 708.503 kb on + strand, within Psest_0651 at 708.504 kb on - strand, within Psest_0651 at 708.504 kb on - strand, within Psest_0651 at 708.552 kb on - strand, within Psest_0651 at 708.552 kb on - strand, within Psest_0651 at 708.552 kb on - strand, within Psest_0651 at 708.611 kb on + strand, within Psest_0651 at 708.611 kb on + strand, within Psest_0651 at 708.612 kb on - strand, within Psest_0651 at 709.003 kb on + strand at 709.093 kb on + strand at 709.093 kb on + strand at 709.093 kb on + strand at 709.093 kb on + strand at 709.093 kb on + strand at 709.093 kb on + strand at 709.093 kb on + strand at 709.094 kb on - strand at 709.094 kb on - strand at 709.094 kb on - strand at 709.094 kb on - strand at 709.094 kb on - strand at 709.094 kb on - strand at 709.094 kb on - strand at 709.094 kb on - strand at 709.265 kb on + strand, within Psest_0652 at 709.265 kb on + strand, within Psest_0652 at 709.661 kb on + strand, within Psest_0652 at 709.662 kb on - strand, within Psest_0652 at 709.768 kb on - strand, within Psest_0652 at 709.840 kb on + strand, within Psest_0652 at 709.852 kb on + strand, within Psest_0652 at 709.952 kb on + strand at 709.952 kb on + strand at 709.952 kb on + strand at 709.953 kb on - strand at 710.031 kb on - strand at 710.031 kb on - strand at 710.422 kb on + strand, within Psest_0653
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 708,142 - Psest_0651 0.63 +1.6 708,447 - Psest_0651 0.76 +0.6 708,503 + Psest_0651 0.78 -2.1 708,503 + Psest_0651 0.78 +0.8 708,504 - Psest_0651 0.78 -0.9 708,504 - Psest_0651 0.78 -1.0 708,552 - Psest_0651 0.80 +0.7 708,552 - Psest_0651 0.80 +1.8 708,552 - Psest_0651 0.80 -1.4 708,611 + Psest_0651 0.83 -2.4 708,611 + Psest_0651 0.83 +0.8 708,612 - Psest_0651 0.83 -2.5 709,003 + +0.7 709,093 + +0.6 709,093 + +0.5 709,093 + -1.1 709,093 + -1.3 709,093 + -1.3 709,093 + +1.2 709,093 + -1.5 709,094 - +0.6 709,094 - -0.2 709,094 - +0.9 709,094 - +0.7 709,094 - +1.8 709,094 - -0.3 709,094 - -0.6 709,094 - -0.7 709,265 + Psest_0652 0.26 -1.0 709,265 + Psest_0652 0.26 -0.6 709,661 + Psest_0652 0.69 +1.1 709,662 - Psest_0652 0.69 +1.3 709,768 - Psest_0652 0.80 -1.3 709,840 + Psest_0652 0.88 +2.6 709,852 + Psest_0652 0.89 +2.0 709,952 + +2.5 709,952 + -1.0 709,952 + -3.1 709,953 - -0.9 710,031 - +2.2 710,031 - -1.1 710,422 + Psest_0653 0.30 +0.6
Or see this region's nucleotide sequence