Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4301

Experiment: Carbenicillin 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_4300 and Psest_4301 overlap by 4 nucleotidesPsest_4301 and Psest_4302 overlap by 4 nucleotides Psest_4300: Psest_4300 - PAS domain S-box, at 4,496,349 to 4,499,219 _4300 Psest_4301: Psest_4301 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 4,499,216 to 4,499,605 _4301 Psest_4302: Psest_4302 - hypothetical protein, at 4,499,602 to 4,500,738 _4302 Position (kb) 4499 4500Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4498.423 kb on + strand, within Psest_4300at 4498.423 kb on + strand, within Psest_4300at 4498.423 kb on + strand, within Psest_4300at 4498.423 kb on + strand, within Psest_4300at 4498.424 kb on - strand, within Psest_4300at 4498.424 kb on - strand, within Psest_4300at 4498.460 kb on + strand, within Psest_4300at 4498.522 kb on - strand, within Psest_4300at 4498.726 kb on + strand, within Psest_4300at 4498.814 kb on - strand, within Psest_4300at 4498.873 kb on + strand, within Psest_4300at 4498.873 kb on + strand, within Psest_4300at 4498.873 kb on + strand, within Psest_4300at 4498.874 kb on - strand, within Psest_4300at 4499.286 kb on - strand, within Psest_4301at 4499.286 kb on - strand, within Psest_4301at 4499.286 kb on - strand, within Psest_4301at 4499.286 kb on - strand, within Psest_4301at 4499.286 kb on - strand, within Psest_4301at 4499.402 kb on + strand, within Psest_4301at 4499.534 kb on + strand, within Psest_4301at 4499.534 kb on + strand, within Psest_4301at 4499.535 kb on - strand, within Psest_4301at 4499.535 kb on - strand, within Psest_4301at 4499.535 kb on - strand, within Psest_4301at 4499.821 kb on + strand, within Psest_4302at 4499.822 kb on - strand, within Psest_4302at 4500.133 kb on + strand, within Psest_4302at 4500.133 kb on + strand, within Psest_4302at 4500.133 kb on + strand, within Psest_4302at 4500.134 kb on - strand, within Psest_4302at 4500.134 kb on - strand, within Psest_4302at 4500.134 kb on - strand, within Psest_4302at 4500.290 kb on - strand, within Psest_4302at 4500.290 kb on - strand, within Psest_4302at 4500.290 kb on - strand, within Psest_4302at 4500.290 kb on - strand, within Psest_4302at 4500.290 kb on - strand, within Psest_4302at 4500.424 kb on + strand, within Psest_4302at 4500.449 kb on - strand, within Psest_4302at 4500.514 kb on + strand, within Psest_4302at 4500.514 kb on + strand, within Psest_4302at 4500.514 kb on + strand, within Psest_4302at 4500.515 kb on - strand, within Psest_4302at 4500.515 kb on - strand, within Psest_4302at 4500.515 kb on - strand, within Psest_4302at 4500.517 kb on + strand, within Psest_4302at 4500.517 kb on + strand, within Psest_4302at 4500.517 kb on + strand, within Psest_4302at 4500.517 kb on + strand, within Psest_4302at 4500.517 kb on + strand, within Psest_4302at 4500.517 kb on + strand, within Psest_4302at 4500.517 kb on + strand, within Psest_4302at 4500.518 kb on - strand, within Psest_4302at 4500.518 kb on - strand, within Psest_4302at 4500.518 kb on - strand, within Psest_4302at 4500.518 kb on - strand, within Psest_4302at 4500.518 kb on - strand, within Psest_4302at 4500.518 kb on - strand, within Psest_4302at 4500.520 kb on + strand, within Psest_4302at 4500.535 kb on + strand, within Psest_4302at 4500.535 kb on + strand, within Psest_4302at 4500.535 kb on + strand, within Psest_4302at 4500.536 kb on - strand, within Psest_4302

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml
remove
4,498,423 + Psest_4300 0.72 -2.6
4,498,423 + Psest_4300 0.72 -0.6
4,498,423 + Psest_4300 0.72 -1.7
4,498,423 + Psest_4300 0.72 -0.0
4,498,424 - Psest_4300 0.72 +0.8
4,498,424 - Psest_4300 0.72 +0.6
4,498,460 + Psest_4300 0.74 +0.8
4,498,522 - Psest_4300 0.76 -0.1
4,498,726 + Psest_4300 0.83 +2.1
4,498,814 - Psest_4300 0.86 +0.7
4,498,873 + Psest_4300 0.88 +0.2
4,498,873 + Psest_4300 0.88 +2.0
4,498,873 + Psest_4300 0.88 +0.0
4,498,874 - Psest_4300 0.88 -0.8
4,499,286 - Psest_4301 0.18 -2.1
4,499,286 - Psest_4301 0.18 -0.9
4,499,286 - Psest_4301 0.18 -0.5
4,499,286 - Psest_4301 0.18 -2.9
4,499,286 - Psest_4301 0.18 -0.1
4,499,402 + Psest_4301 0.48 -1.5
4,499,534 + Psest_4301 0.82 -0.4
4,499,534 + Psest_4301 0.82 +1.8
4,499,535 - Psest_4301 0.82 +0.4
4,499,535 - Psest_4301 0.82 -0.2
4,499,535 - Psest_4301 0.82 +0.0
4,499,821 + Psest_4302 0.19 +0.4
4,499,822 - Psest_4302 0.19 +1.0
4,500,133 + Psest_4302 0.47 -1.7
4,500,133 + Psest_4302 0.47 +0.7
4,500,133 + Psest_4302 0.47 +0.3
4,500,134 - Psest_4302 0.47 +1.9
4,500,134 - Psest_4302 0.47 -0.3
4,500,134 - Psest_4302 0.47 -0.8
4,500,290 - Psest_4302 0.61 -0.1
4,500,290 - Psest_4302 0.61 -0.1
4,500,290 - Psest_4302 0.61 +2.1
4,500,290 - Psest_4302 0.61 +0.2
4,500,290 - Psest_4302 0.61 -1.5
4,500,424 + Psest_4302 0.72 +1.0
4,500,449 - Psest_4302 0.74 +2.1
4,500,514 + Psest_4302 0.80 +0.2
4,500,514 + Psest_4302 0.80 -1.9
4,500,514 + Psest_4302 0.80 +0.4
4,500,515 - Psest_4302 0.80 +0.9
4,500,515 - Psest_4302 0.80 -2.1
4,500,515 - Psest_4302 0.80 -0.3
4,500,517 + Psest_4302 0.80 -0.6
4,500,517 + Psest_4302 0.80 -0.5
4,500,517 + Psest_4302 0.80 -1.0
4,500,517 + Psest_4302 0.80 +0.3
4,500,517 + Psest_4302 0.80 +0.4
4,500,517 + Psest_4302 0.80 -0.2
4,500,517 + Psest_4302 0.80 +1.6
4,500,518 - Psest_4302 0.81 -0.2
4,500,518 - Psest_4302 0.81 +1.9
4,500,518 - Psest_4302 0.81 +0.1
4,500,518 - Psest_4302 0.81 +0.1
4,500,518 - Psest_4302 0.81 +1.1
4,500,518 - Psest_4302 0.81 +1.5
4,500,520 + Psest_4302 0.81 +1.6
4,500,535 + Psest_4302 0.82 -0.3
4,500,535 + Psest_4302 0.82 -0.5
4,500,535 + Psest_4302 0.82 -0.4
4,500,536 - Psest_4302 0.82 -1.8

Or see this region's nucleotide sequence