Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4297 and Psest_4298 are separated by 0 nucleotides Psest_4298 and Psest_4299 overlap by 8 nucleotides Psest_4299 and Psest_4300 are separated by 128 nucleotides
Psest_4297: Psest_4297 - PAS domain S-box, at 4,491,792 to 4,494,203
_4297
Psest_4298: Psest_4298 - Response regulator containing a CheY-like receiver domain and a GGDEF domain, at 4,494,204 to 4,494,590
_4298
Psest_4299: Psest_4299 - diguanylate cyclase (GGDEF) domain, at 4,494,583 to 4,496,220
_4299
Psest_4300: Psest_4300 - PAS domain S-box, at 4,496,349 to 4,499,219
_4300
Position (kb)
4494
4495
4496
4497 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4493.784 kb on + strand, within Psest_4297 at 4493.785 kb on - strand, within Psest_4297 at 4494.201 kb on + strand at 4494.201 kb on + strand at 4494.201 kb on + strand at 4494.201 kb on + strand at 4494.201 kb on + strand at 4494.202 kb on - strand at 4494.202 kb on - strand at 4494.202 kb on - strand at 4494.202 kb on - strand at 4494.442 kb on + strand, within Psest_4298 at 4494.596 kb on + strand at 4494.597 kb on - strand at 4494.988 kb on + strand, within Psest_4299 at 4494.988 kb on + strand, within Psest_4299 at 4494.988 kb on + strand, within Psest_4299 at 4494.988 kb on + strand, within Psest_4299 at 4494.988 kb on + strand, within Psest_4299 at 4494.988 kb on + strand, within Psest_4299 at 4494.989 kb on - strand, within Psest_4299 at 4494.989 kb on - strand, within Psest_4299 at 4494.989 kb on - strand, within Psest_4299 at 4494.989 kb on - strand, within Psest_4299 at 4494.989 kb on - strand, within Psest_4299 at 4494.989 kb on - strand, within Psest_4299 at 4494.989 kb on - strand, within Psest_4299 at 4494.989 kb on - strand, within Psest_4299 at 4495.390 kb on + strand, within Psest_4299 at 4495.579 kb on + strand, within Psest_4299 at 4495.579 kb on + strand, within Psest_4299 at 4495.579 kb on + strand, within Psest_4299 at 4495.579 kb on + strand, within Psest_4299 at 4495.579 kb on + strand, within Psest_4299 at 4495.580 kb on - strand, within Psest_4299 at 4495.580 kb on - strand, within Psest_4299 at 4495.580 kb on - strand, within Psest_4299 at 4495.580 kb on - strand, within Psest_4299 at 4495.580 kb on - strand, within Psest_4299 at 4495.665 kb on + strand, within Psest_4299 at 4495.685 kb on + strand, within Psest_4299 at 4495.685 kb on + strand, within Psest_4299 at 4495.685 kb on + strand, within Psest_4299 at 4495.685 kb on + strand, within Psest_4299 at 4495.685 kb on + strand, within Psest_4299 at 4495.686 kb on - strand, within Psest_4299 at 4495.686 kb on - strand, within Psest_4299 at 4495.686 kb on - strand, within Psest_4299 at 4495.687 kb on + strand, within Psest_4299 at 4495.687 kb on + strand, within Psest_4299 at 4495.687 kb on + strand, within Psest_4299 at 4495.688 kb on - strand, within Psest_4299 at 4495.688 kb on - strand, within Psest_4299 at 4495.688 kb on - strand, within Psest_4299 at 4495.688 kb on - strand, within Psest_4299 at 4495.869 kb on + strand, within Psest_4299 at 4495.869 kb on + strand, within Psest_4299 at 4495.874 kb on - strand, within Psest_4299 at 4496.086 kb on + strand at 4496.086 kb on + strand at 4496.086 kb on + strand at 4496.087 kb on - strand at 4496.087 kb on - strand at 4496.087 kb on - strand at 4496.142 kb on - strand at 4496.142 kb on - strand at 4496.142 kb on - strand at 4496.170 kb on + strand at 4496.170 kb on + strand at 4496.170 kb on + strand at 4496.171 kb on - strand at 4496.171 kb on - strand at 4496.202 kb on - strand at 4496.202 kb on - strand at 4496.202 kb on - strand at 4496.219 kb on - strand at 4496.219 kb on - strand at 4496.266 kb on + strand at 4496.266 kb on + strand at 4496.266 kb on + strand at 4496.267 kb on - strand at 4496.267 kb on - strand at 4496.267 kb on - strand at 4496.268 kb on + strand at 4496.268 kb on + strand at 4496.268 kb on + strand at 4496.268 kb on + strand at 4496.269 kb on - strand at 4496.269 kb on - strand at 4496.269 kb on - strand at 4496.269 kb on - strand at 4496.269 kb on - strand at 4496.269 kb on - strand at 4496.324 kb on + strand at 4496.324 kb on + strand at 4496.324 kb on + strand at 4496.325 kb on - strand at 4496.325 kb on - strand at 4496.325 kb on - strand at 4496.325 kb on - strand at 4496.325 kb on - strand at 4496.577 kb on + strand at 4496.577 kb on + strand at 4496.577 kb on + strand at 4496.578 kb on - strand at 4496.589 kb on + strand at 4496.622 kb on - strand at 4496.658 kb on + strand, within Psest_4300 at 4496.966 kb on - strand, within Psest_4300 at 4496.972 kb on + strand, within Psest_4300 at 4497.057 kb on + strand, within Psest_4300 at 4497.058 kb on - strand, within Psest_4300
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 4,493,784 + Psest_4297 0.83 -1.2 4,493,785 - Psest_4297 0.83 +3.6 4,494,201 + +0.9 4,494,201 + +0.6 4,494,201 + -0.4 4,494,201 + +1.6 4,494,201 + +0.4 4,494,202 - +2.3 4,494,202 - +0.9 4,494,202 - +0.5 4,494,202 - -3.0 4,494,442 + Psest_4298 0.61 -2.3 4,494,596 + +1.8 4,494,597 - -0.6 4,494,988 + Psest_4299 0.25 +0.9 4,494,988 + Psest_4299 0.25 -0.6 4,494,988 + Psest_4299 0.25 +0.4 4,494,988 + Psest_4299 0.25 +1.4 4,494,988 + Psest_4299 0.25 +0.9 4,494,988 + Psest_4299 0.25 +0.2 4,494,989 - Psest_4299 0.25 +1.1 4,494,989 - Psest_4299 0.25 -0.9 4,494,989 - Psest_4299 0.25 +0.9 4,494,989 - Psest_4299 0.25 -0.1 4,494,989 - Psest_4299 0.25 +0.8 4,494,989 - Psest_4299 0.25 -1.9 4,494,989 - Psest_4299 0.25 -3.1 4,494,989 - Psest_4299 0.25 -0.3 4,495,390 + Psest_4299 0.49 +0.8 4,495,579 + Psest_4299 0.61 -0.4 4,495,579 + Psest_4299 0.61 +3.1 4,495,579 + Psest_4299 0.61 +0.1 4,495,579 + Psest_4299 0.61 -0.2 4,495,579 + Psest_4299 0.61 +1.4 4,495,580 - Psest_4299 0.61 -1.5 4,495,580 - Psest_4299 0.61 +0.6 4,495,580 - Psest_4299 0.61 +1.7 4,495,580 - Psest_4299 0.61 +0.2 4,495,580 - Psest_4299 0.61 -0.1 4,495,665 + Psest_4299 0.66 -2.0 4,495,685 + Psest_4299 0.67 +1.0 4,495,685 + Psest_4299 0.67 +0.5 4,495,685 + Psest_4299 0.67 +1.3 4,495,685 + Psest_4299 0.67 -0.6 4,495,685 + Psest_4299 0.67 +0.4 4,495,686 - Psest_4299 0.67 +1.5 4,495,686 - Psest_4299 0.67 -0.3 4,495,686 - Psest_4299 0.67 +0.9 4,495,687 + Psest_4299 0.67 -0.3 4,495,687 + Psest_4299 0.67 -2.0 4,495,687 + Psest_4299 0.67 +0.5 4,495,688 - Psest_4299 0.67 +0.0 4,495,688 - Psest_4299 0.67 -2.0 4,495,688 - Psest_4299 0.67 +1.4 4,495,688 - Psest_4299 0.67 -0.6 4,495,869 + Psest_4299 0.79 -1.6 4,495,869 + Psest_4299 0.79 -2.6 4,495,874 - Psest_4299 0.79 +1.1 4,496,086 + -0.2 4,496,086 + +0.6 4,496,086 + +0.4 4,496,087 - +0.3 4,496,087 - -1.4 4,496,087 - -1.8 4,496,142 - +0.5 4,496,142 - +1.3 4,496,142 - +2.0 4,496,170 + -0.1 4,496,170 + -0.6 4,496,170 + +1.0 4,496,171 - -0.8 4,496,171 - -1.6 4,496,202 - -0.6 4,496,202 - +2.0 4,496,202 - -0.5 4,496,219 - +0.3 4,496,219 - -1.7 4,496,266 + +2.4 4,496,266 + +1.1 4,496,266 + +3.3 4,496,267 - -0.9 4,496,267 - -0.2 4,496,267 - +1.2 4,496,268 + -0.8 4,496,268 + +1.7 4,496,268 + +0.9 4,496,268 + +0.3 4,496,269 - +0.2 4,496,269 - -2.5 4,496,269 - +1.2 4,496,269 - -2.6 4,496,269 - -1.1 4,496,269 - +0.1 4,496,324 + +3.8 4,496,324 + +0.6 4,496,324 + -0.5 4,496,325 - -2.3 4,496,325 - -1.6 4,496,325 - +1.1 4,496,325 - +3.3 4,496,325 - +1.0 4,496,577 + -0.5 4,496,577 + -2.0 4,496,577 + +0.6 4,496,578 - -0.4 4,496,589 + +0.8 4,496,622 - +1.5 4,496,658 + Psest_4300 0.11 +1.6 4,496,966 - Psest_4300 0.21 -0.7 4,496,972 + Psest_4300 0.22 -1.9 4,497,057 + Psest_4300 0.25 +0.8 4,497,058 - Psest_4300 0.25 -0.4
Or see this region's nucleotide sequence