Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4295 and Psest_4296 are separated by 48 nucleotides Psest_4296 and Psest_4297 are separated by 75 nucleotides Psest_4297 and Psest_4298 are separated by 0 nucleotides Psest_4298 and Psest_4299 overlap by 8 nucleotides
Psest_4295: Psest_4295 - PAS domain S-box, at 4,488,321 to 4,491,281
_4295
Psest_4296: Psest_4296 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 4,491,330 to 4,491,716
_4296
Psest_4297: Psest_4297 - PAS domain S-box, at 4,491,792 to 4,494,203
_4297
Psest_4298: Psest_4298 - Response regulator containing a CheY-like receiver domain and a GGDEF domain, at 4,494,204 to 4,494,590
_4298
Psest_4299: Psest_4299 - diguanylate cyclase (GGDEF) domain, at 4,494,583 to 4,496,220
_4299
Position (kb)
4491
4492
4493
4494
4495 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4490.827 kb on + strand, within Psest_4295 at 4490.948 kb on - strand, within Psest_4295 at 4490.955 kb on - strand, within Psest_4295 at 4491.714 kb on + strand at 4491.777 kb on + strand at 4491.777 kb on + strand at 4491.777 kb on + strand at 4491.777 kb on + strand at 4491.777 kb on + strand at 4491.777 kb on + strand at 4491.777 kb on + strand at 4491.777 kb on + strand at 4491.778 kb on - strand at 4491.778 kb on - strand at 4491.778 kb on - strand at 4491.778 kb on - strand at 4491.778 kb on - strand at 4491.778 kb on - strand at 4491.778 kb on - strand at 4491.778 kb on - strand at 4492.053 kb on + strand, within Psest_4297 at 4492.053 kb on + strand, within Psest_4297 at 4492.053 kb on + strand, within Psest_4297 at 4492.053 kb on + strand, within Psest_4297 at 4492.053 kb on + strand, within Psest_4297 at 4492.053 kb on + strand, within Psest_4297 at 4492.053 kb on + strand, within Psest_4297 at 4492.053 kb on + strand, within Psest_4297 at 4492.053 kb on + strand, within Psest_4297 at 4492.053 kb on + strand, within Psest_4297 at 4492.053 kb on + strand, within Psest_4297 at 4492.053 kb on + strand, within Psest_4297 at 4492.054 kb on - strand, within Psest_4297 at 4492.054 kb on - strand, within Psest_4297 at 4492.145 kb on + strand, within Psest_4297 at 4492.155 kb on + strand, within Psest_4297 at 4492.155 kb on + strand, within Psest_4297 at 4492.156 kb on - strand, within Psest_4297 at 4492.188 kb on + strand, within Psest_4297 at 4492.188 kb on + strand, within Psest_4297 at 4492.188 kb on + strand, within Psest_4297 at 4492.189 kb on - strand, within Psest_4297 at 4492.189 kb on - strand, within Psest_4297 at 4492.189 kb on - strand, within Psest_4297 at 4492.189 kb on - strand, within Psest_4297 at 4492.190 kb on + strand, within Psest_4297 at 4492.191 kb on - strand, within Psest_4297 at 4492.821 kb on + strand, within Psest_4297 at 4492.821 kb on + strand, within Psest_4297 at 4492.821 kb on + strand, within Psest_4297 at 4492.822 kb on - strand, within Psest_4297 at 4492.822 kb on - strand, within Psest_4297 at 4492.822 kb on - strand, within Psest_4297 at 4492.849 kb on - strand, within Psest_4297 at 4492.905 kb on + strand, within Psest_4297 at 4492.905 kb on + strand, within Psest_4297 at 4492.905 kb on + strand, within Psest_4297 at 4492.906 kb on - strand, within Psest_4297 at 4492.906 kb on - strand, within Psest_4297 at 4492.906 kb on - strand, within Psest_4297 at 4492.906 kb on - strand, within Psest_4297 at 4493.326 kb on + strand, within Psest_4297 at 4493.326 kb on + strand, within Psest_4297 at 4493.326 kb on + strand, within Psest_4297 at 4493.327 kb on - strand, within Psest_4297 at 4493.327 kb on - strand, within Psest_4297 at 4493.327 kb on - strand, within Psest_4297 at 4493.327 kb on - strand, within Psest_4297 at 4493.327 kb on - strand, within Psest_4297 at 4493.430 kb on + strand, within Psest_4297 at 4493.430 kb on + strand, within Psest_4297 at 4493.430 kb on + strand, within Psest_4297 at 4493.430 kb on + strand, within Psest_4297 at 4493.430 kb on + strand, within Psest_4297 at 4493.431 kb on - strand, within Psest_4297 at 4493.431 kb on - strand, within Psest_4297 at 4493.431 kb on - strand, within Psest_4297 at 4493.431 kb on - strand, within Psest_4297 at 4493.784 kb on + strand, within Psest_4297 at 4493.785 kb on - strand, within Psest_4297 at 4494.201 kb on + strand at 4494.201 kb on + strand at 4494.201 kb on + strand at 4494.201 kb on + strand at 4494.201 kb on + strand at 4494.202 kb on - strand at 4494.202 kb on - strand at 4494.202 kb on - strand at 4494.202 kb on - strand at 4494.442 kb on + strand, within Psest_4298 at 4494.596 kb on + strand at 4494.597 kb on - strand at 4494.988 kb on + strand, within Psest_4299 at 4494.988 kb on + strand, within Psest_4299 at 4494.988 kb on + strand, within Psest_4299 at 4494.988 kb on + strand, within Psest_4299 at 4494.988 kb on + strand, within Psest_4299 at 4494.988 kb on + strand, within Psest_4299 at 4494.989 kb on - strand, within Psest_4299 at 4494.989 kb on - strand, within Psest_4299 at 4494.989 kb on - strand, within Psest_4299 at 4494.989 kb on - strand, within Psest_4299 at 4494.989 kb on - strand, within Psest_4299 at 4494.989 kb on - strand, within Psest_4299 at 4494.989 kb on - strand, within Psest_4299 at 4494.989 kb on - strand, within Psest_4299
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 4,490,827 + Psest_4295 0.85 -0.5 4,490,948 - Psest_4295 0.89 -1.8 4,490,955 - Psest_4295 0.89 -1.2 4,491,714 + +0.5 4,491,777 + -0.8 4,491,777 + -1.3 4,491,777 + -1.5 4,491,777 + -1.5 4,491,777 + -0.1 4,491,777 + -0.6 4,491,777 + -1.0 4,491,777 + +1.2 4,491,778 - +1.4 4,491,778 - -2.3 4,491,778 - -1.1 4,491,778 - +0.1 4,491,778 - +0.7 4,491,778 - -2.7 4,491,778 - +1.4 4,491,778 - -0.7 4,492,053 + Psest_4297 0.11 -1.4 4,492,053 + Psest_4297 0.11 +0.5 4,492,053 + Psest_4297 0.11 +2.0 4,492,053 + Psest_4297 0.11 +0.5 4,492,053 + Psest_4297 0.11 +1.0 4,492,053 + Psest_4297 0.11 -0.9 4,492,053 + Psest_4297 0.11 -0.1 4,492,053 + Psest_4297 0.11 +0.5 4,492,053 + Psest_4297 0.11 -1.2 4,492,053 + Psest_4297 0.11 +1.3 4,492,053 + Psest_4297 0.11 +1.5 4,492,053 + Psest_4297 0.11 -1.8 4,492,054 - Psest_4297 0.11 -1.6 4,492,054 - Psest_4297 0.11 -0.3 4,492,145 + Psest_4297 0.15 +2.8 4,492,155 + Psest_4297 0.15 +0.9 4,492,155 + Psest_4297 0.15 -0.2 4,492,156 - Psest_4297 0.15 -1.0 4,492,188 + Psest_4297 0.16 +0.1 4,492,188 + Psest_4297 0.16 -1.1 4,492,188 + Psest_4297 0.16 +2.7 4,492,189 - Psest_4297 0.16 +2.6 4,492,189 - Psest_4297 0.16 +2.7 4,492,189 - Psest_4297 0.16 +1.0 4,492,189 - Psest_4297 0.16 -0.3 4,492,190 + Psest_4297 0.17 +0.0 4,492,191 - Psest_4297 0.17 +0.3 4,492,821 + Psest_4297 0.43 +3.2 4,492,821 + Psest_4297 0.43 +0.8 4,492,821 + Psest_4297 0.43 -0.4 4,492,822 - Psest_4297 0.43 +0.5 4,492,822 - Psest_4297 0.43 +1.4 4,492,822 - Psest_4297 0.43 -1.7 4,492,849 - Psest_4297 0.44 +1.0 4,492,905 + Psest_4297 0.46 +2.0 4,492,905 + Psest_4297 0.46 +0.6 4,492,905 + Psest_4297 0.46 -2.1 4,492,906 - Psest_4297 0.46 +0.3 4,492,906 - Psest_4297 0.46 +1.2 4,492,906 - Psest_4297 0.46 -1.3 4,492,906 - Psest_4297 0.46 -1.4 4,493,326 + Psest_4297 0.64 -0.2 4,493,326 + Psest_4297 0.64 -0.2 4,493,326 + Psest_4297 0.64 +0.9 4,493,327 - Psest_4297 0.64 -0.6 4,493,327 - Psest_4297 0.64 -1.6 4,493,327 - Psest_4297 0.64 +0.4 4,493,327 - Psest_4297 0.64 +1.0 4,493,327 - Psest_4297 0.64 +0.2 4,493,430 + Psest_4297 0.68 +1.3 4,493,430 + Psest_4297 0.68 -2.0 4,493,430 + Psest_4297 0.68 +0.7 4,493,430 + Psest_4297 0.68 +2.8 4,493,430 + Psest_4297 0.68 -1.1 4,493,431 - Psest_4297 0.68 +2.4 4,493,431 - Psest_4297 0.68 -0.4 4,493,431 - Psest_4297 0.68 +0.7 4,493,431 - Psest_4297 0.68 +0.9 4,493,784 + Psest_4297 0.83 -1.2 4,493,785 - Psest_4297 0.83 +3.6 4,494,201 + +0.9 4,494,201 + +0.6 4,494,201 + -0.4 4,494,201 + +1.6 4,494,201 + +0.4 4,494,202 - +2.3 4,494,202 - +0.9 4,494,202 - +0.5 4,494,202 - -3.0 4,494,442 + Psest_4298 0.61 -2.3 4,494,596 + +1.8 4,494,597 - -0.6 4,494,988 + Psest_4299 0.25 +0.9 4,494,988 + Psest_4299 0.25 -0.6 4,494,988 + Psest_4299 0.25 +0.4 4,494,988 + Psest_4299 0.25 +1.4 4,494,988 + Psest_4299 0.25 +0.9 4,494,988 + Psest_4299 0.25 +0.2 4,494,989 - Psest_4299 0.25 +1.1 4,494,989 - Psest_4299 0.25 -0.9 4,494,989 - Psest_4299 0.25 +0.9 4,494,989 - Psest_4299 0.25 -0.1 4,494,989 - Psest_4299 0.25 +0.8 4,494,989 - Psest_4299 0.25 -1.9 4,494,989 - Psest_4299 0.25 -3.1 4,494,989 - Psest_4299 0.25 -0.3
Or see this region's nucleotide sequence